Wall clock time and date at job start Thu Apr 9 2020 12:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46737 * 2 1 4 4 H 1.08999 * 109.48067 * 305.00076 * 3 2 1 5 5 C 1.50708 * 109.46961 * 184.99952 * 3 2 1 6 6 H 1.07996 * 120.00018 * 240.00118 * 5 3 2 7 7 C 1.37872 * 119.99747 * 60.00382 * 5 3 2 8 8 N 1.31515 * 119.99998 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 120.00386 * 359.97438 * 7 5 3 10 10 H 1.48493 * 109.46907 * 270.00216 * 9 7 5 11 11 H 1.48503 * 109.46692 * 30.00028 * 9 7 5 12 12 H 1.48497 * 109.47063 * 150.00064 * 9 7 5 13 13 N 1.46506 * 109.47086 * 65.00430 * 3 2 1 14 14 C 1.34778 * 119.99838 * 274.99493 * 13 3 2 15 15 O 1.21585 * 119.99831 * 0.02562 * 14 13 3 16 16 N 1.34770 * 119.99831 * 179.97438 * 14 13 3 17 17 C 1.39583 * 119.99906 * 174.71288 * 16 14 13 18 18 C 1.39652 * 121.08715 * 327.69758 * 17 16 14 19 19 C 1.38299 * 117.88801 * 179.78661 * 18 17 16 20 20 N 1.32058 * 119.93286 * 0.49608 * 19 18 17 21 21 N 1.28309 * 122.37416 * 359.74011 * 20 19 18 22 22 C 1.31811 * 122.25732 * 0.02562 * 21 20 19 23 23 H 1.09004 * 109.47102 * 59.99895 * 1 2 3 24 24 H 1.09006 * 109.47139 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47441 * 299.99756 * 1 2 3 26 26 H 1.08999 * 109.47047 * 240.00853 * 2 1 3 27 27 H 1.08990 * 109.47062 * 120.00146 * 2 1 3 28 28 H 0.97001 * 120.00518 * 179.97438 * 8 7 5 29 29 H 0.96996 * 120.00062 * 94.99574 * 13 3 2 30 30 H 0.96998 * 120.00613 * 354.71222 * 16 14 13 31 31 H 1.07993 * 121.05238 * 0.02562 * 18 17 16 32 32 H 1.08004 * 120.03632 * 180.23466 * 19 18 17 33 33 H 1.08001 * 120.13401 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 5.4539 0.8806 -1.3363 9 14 3.0963 0.1090 -2.5701 10 1 2.8756 -1.3270 -2.2634 11 1 1.7876 0.8074 -2.6386 12 1 3.7936 0.2350 -3.8752 13 7 1.6523 2.0975 1.2519 14 6 0.4350 2.6644 1.3671 15 8 -0.3416 2.6318 0.4322 16 7 0.0783 3.2664 2.5189 17 6 -1.1365 3.9487 2.6026 18 6 -1.6745 4.6022 1.4919 19 6 -2.8843 5.2540 1.6481 20 7 -3.4868 5.2523 2.8232 21 7 -2.9935 4.6572 3.8473 22 6 -1.8489 4.0053 3.7986 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 5.8770 0.4822 -2.1129 29 1 2.2718 2.1231 1.9978 30 1 0.6657 3.2256 3.2897 31 1 -1.1640 4.5955 0.5403 32 1 -3.3337 5.7674 0.8109 33 1 -1.4652 3.5168 4.6821 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662500853.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:23 Heat of formation + Delta-G solvation = 10.998976 kcal Electronic energy + Delta-G solvation = -18135.662294 eV Core-core repulsion = 15196.462982 eV Total energy + Delta-G solvation = -2939.199312 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.32795 -41.05537 -37.78979 -36.24624 -34.50737 -33.63996 -33.41777 -31.74180 -29.37471 -25.85552 -25.36547 -24.44872 -22.76449 -21.62808 -20.28596 -19.17959 -18.47394 -17.93882 -17.66406 -17.23221 -16.41606 -16.18343 -15.83670 -15.37021 -15.08081 -15.02982 -14.36771 -14.28739 -13.85592 -13.68679 -12.99998 -12.78670 -12.52412 -12.39478 -11.86760 -11.81470 -11.60786 -11.31201 -11.24598 -11.08817 -10.87538 -10.71290 -10.01484 -9.63274 -8.37950 -6.43887 -0.23963 -0.02342 1.28736 1.37223 1.44894 1.46828 2.01272 2.26207 2.65374 2.98457 3.12401 3.23332 3.52947 3.65681 3.98495 4.23456 4.31804 4.41928 4.45289 4.51961 4.78518 4.88925 5.00908 5.09657 5.10920 5.19486 5.37700 5.42654 5.51148 5.58938 5.83084 6.22057 6.59361 7.01353 7.20870 7.47579 7.72623 8.76989 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.043256 B = 0.005235 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.154615 B = 5347.209813 C = 5492.146186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.139 4.139 3 C 0.268 3.732 4 H 0.028 0.972 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.032 3.968 8 N -0.933 5.933 9 Si 0.933 3.067 10 H -0.261 1.261 11 H -0.257 1.257 12 H -0.296 1.296 13 N -0.703 5.703 14 C 0.698 3.302 15 O -0.602 6.602 16 N -0.664 5.664 17 C 0.176 3.824 18 C -0.145 4.145 19 C 0.067 3.933 20 N -0.295 5.295 21 N -0.251 5.251 22 C 0.025 3.975 23 H 0.038 0.962 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.270 0.730 29 H 0.408 0.592 30 H 0.431 0.569 31 H 0.151 0.849 32 H 0.200 0.800 33 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.166 3.777 8.251 14.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.178 4.178 3 C 0.163 3.837 4 H 0.046 0.954 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.168 4.168 8 N -0.572 5.572 9 Si 0.761 3.239 10 H -0.187 1.187 11 H -0.181 1.181 12 H -0.224 1.224 13 N -0.356 5.356 14 C 0.398 3.602 15 O -0.481 6.481 16 N -0.313 5.313 17 C 0.067 3.933 18 C -0.177 4.177 19 C -0.096 4.096 20 N -0.138 5.138 21 N -0.091 5.091 22 C -0.144 4.144 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.243 0.757 30 H 0.271 0.729 31 H 0.168 0.832 32 H 0.217 0.783 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -12.903 4.135 8.175 15.825 hybrid contribution 2.025 -0.915 -1.146 2.500 sum -10.878 3.220 7.029 13.346 Atomic orbital electron populations 1.21733 0.95272 1.00358 1.01532 1.22243 0.95720 0.98628 1.01194 1.18717 0.93087 0.89318 0.82575 0.95411 1.21253 0.90229 1.38628 1.06990 0.92271 1.25498 0.95633 0.95867 0.99792 1.69965 1.10311 1.46050 1.30866 0.86082 0.79457 0.79971 0.78395 1.18731 1.18126 1.22360 1.45140 1.13833 1.58449 1.18139 1.16044 0.82882 0.78495 0.82757 1.90916 1.52349 1.65340 1.39501 1.42385 1.19674 1.54230 1.15050 1.18720 0.87307 0.91397 0.95904 1.22545 0.98212 0.96043 1.00917 1.24555 0.92033 0.95423 0.97595 1.72817 1.28235 1.15300 0.97456 1.72827 1.09600 1.04871 1.21834 1.24612 0.91936 0.99297 0.98557 0.94328 0.92659 0.92908 0.93788 0.91136 0.92083 0.75652 0.72924 0.83180 0.78314 0.77588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 8.51 71.98 0.61 -4.11 16 2 C -0.14 -5.53 5.11 30.59 0.16 -5.38 16 3 C 0.27 11.49 1.83 44.25 0.08 11.57 16 4 H 0.03 1.35 6.64 -2.39 -0.02 1.33 16 5 C -0.53 -27.06 9.31 25.60 0.24 -26.82 16 6 H 0.06 3.19 7.98 -2.91 -0.02 3.17 16 7 C 0.03 1.73 5.45 84.65 0.46 2.19 16 8 N -0.93 -53.92 13.96 21.45 0.30 -53.62 16 9 Si 0.93 42.64 24.41 68.60 1.67 44.31 16 10 H -0.26 -11.30 6.83 99.48 0.68 -10.62 16 11 H -0.26 -11.51 6.53 99.48 0.65 -10.86 16 12 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 13 N -0.70 -23.54 5.03 -461.40 -2.32 -25.86 16 14 C 0.70 21.80 6.91 179.06 1.24 23.03 16 15 O -0.60 -22.76 11.19 -3.98 -0.04 -22.80 16 16 N -0.66 -14.47 5.36 -316.51 -1.70 -16.17 16 17 C 0.18 4.05 6.35 38.51 0.24 4.29 16 18 C -0.14 -3.64 8.82 22.63 0.20 -3.44 16 19 C 0.07 1.53 11.30 84.67 0.96 2.48 16 20 N -0.30 -7.87 11.50 -57.39 -0.66 -8.53 16 21 N -0.25 -6.46 11.49 -56.86 -0.65 -7.11 16 22 C 0.02 0.50 11.27 84.96 0.96 1.46 16 23 H 0.04 1.49 7.84 -2.38 -0.02 1.47 16 24 H 0.05 1.71 8.14 -2.38 -0.02 1.70 16 25 H 0.05 1.85 5.64 -2.39 -0.01 1.84 16 26 H 0.04 1.86 3.21 -2.39 -0.01 1.85 16 27 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 29 H 0.41 11.48 8.56 -92.71 -0.79 10.69 16 30 H 0.43 5.98 8.84 -92.71 -0.82 5.16 16 31 H 0.15 4.20 6.52 -2.91 -0.02 4.18 16 32 H 0.20 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -66.55 274.21 1.21 -65.33 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -0.53 Total: 19.15 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 5.15 Total: 5.29 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -5.03 Total: -111.28 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.04 Total: -22.80 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.67 Total: 44.31 kcal Total: -66.55 1.21 -65.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662500853.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.333 kcal (2) G-P(sol) polarization free energy of solvation -66.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds