Wall clock time and date at job start Thu Apr 9 2020 12:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 119.99841 * 2 1 4 4 C 1.52996 * 109.47363 * 270.00301 * 3 2 1 5 5 N 1.46496 * 109.47469 * 180.02562 * 4 3 2 6 6 C 1.36932 * 120.00272 * 180.02562 * 5 4 3 7 7 H 1.07999 * 120.00469 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00208 * 179.97438 * 6 5 4 9 9 N 1.31619 * 120.00035 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00267 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47182 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47075 * 119.99882 * 10 8 6 13 13 H 1.48502 * 109.47130 * 239.99937 * 10 8 6 14 14 C 1.34771 * 120.00363 * 180.02562 * 2 1 3 15 15 O 1.21521 * 120.00362 * 184.79174 * 14 2 1 16 16 C 1.48134 * 120.00156 * 4.78922 * 14 2 1 17 17 C 1.40115 * 121.14304 * 322.48665 * 16 14 2 18 18 C 1.38508 * 117.82522 * 179.97438 * 17 16 14 19 19 N 1.31916 * 119.96407 * 0.02562 * 18 17 16 20 20 N 1.28272 * 122.52157 * 359.97438 * 19 18 17 21 21 C 1.31931 * 122.32283 * 0.02562 * 20 19 18 22 22 H 1.08999 * 109.46590 * 264.70125 * 1 2 3 23 23 H 1.09000 * 109.47314 * 24.70609 * 1 2 3 24 24 H 1.09006 * 109.46556 * 144.70504 * 1 2 3 25 25 H 1.08999 * 109.46726 * 30.00349 * 3 2 1 26 26 H 1.09003 * 109.47181 * 149.99897 * 3 2 1 27 27 H 1.09007 * 109.47079 * 300.00006 * 4 3 2 28 28 H 1.09003 * 109.47301 * 59.99670 * 4 3 2 29 29 H 0.97003 * 119.99758 * 359.97438 * 5 4 3 30 30 H 0.96998 * 120.00472 * 179.97438 * 9 8 6 31 31 H 1.07998 * 121.08983 * 359.95521 * 17 16 14 32 32 H 1.07998 * 120.01336 * 179.97438 * 18 17 16 33 33 H 1.08000 * 120.16799 * 180.27802 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4424 5 7 3.1854 2.9789 -1.4425 6 6 3.5273 3.5722 -2.6283 7 1 3.2570 3.1048 -3.5637 8 6 4.2214 4.7743 -2.6283 9 7 4.5505 5.3443 -1.4885 10 14 4.6885 5.5832 -4.2460 11 1 4.2055 4.7478 -5.3748 12 1 4.0653 6.9288 -4.3247 13 1 6.1654 5.7163 -4.3246 14 6 2.1389 -1.1671 -0.0005 15 8 3.3510 -1.1690 0.0874 16 6 1.4023 -2.4478 -0.1082 17 6 0.1667 -2.6287 0.5273 18 6 -0.4627 -3.8537 0.3804 19 7 0.1036 -4.8032 -0.3393 20 7 1.2344 -4.6441 -0.9235 21 6 1.9155 -3.5169 -0.8470 22 1 -0.3632 -0.0949 1.0233 23 1 -0.3634 0.9336 -0.4295 24 1 -0.3633 -0.8388 -0.5938 25 1 1.6084 2.0283 0.5139 26 1 3.1499 1.1385 0.5139 27 1 3.0416 0.9509 -1.9564 28 1 1.5000 1.8408 -1.9563 29 1 3.4279 3.3990 -0.6024 30 1 5.0358 6.1841 -1.4884 31 1 -0.2802 -1.8389 1.1129 32 1 -1.4161 -4.0316 0.8554 33 1 2.8626 -3.4193 -1.3567 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714761685.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:43 Heat of formation + Delta-G solvation = 26.606684 kcal Electronic energy + Delta-G solvation = -17528.680501 eV Core-core repulsion = 14590.157990 eV Total energy + Delta-G solvation = -2938.522511 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.38220 -40.74223 -37.54839 -36.32520 -34.60802 -33.61191 -33.20460 -30.00176 -28.10326 -26.68466 -25.59419 -25.19821 -23.33778 -21.16583 -19.32966 -18.91546 -18.44241 -17.88181 -17.14928 -17.01962 -16.33698 -16.02211 -15.84127 -15.28924 -15.20896 -14.99308 -14.80111 -14.39621 -13.96701 -13.18581 -13.07807 -12.90021 -12.79450 -12.40107 -12.10798 -12.08835 -11.90157 -11.64050 -11.26673 -11.19751 -11.01209 -10.70624 -9.87380 -9.08874 -8.00067 -5.30786 -0.71565 -0.19089 1.38018 1.46238 1.47570 1.57371 1.72306 2.46803 2.53637 3.02148 3.07849 3.33843 3.36158 3.53244 3.74991 4.00302 4.07120 4.16106 4.24715 4.38278 4.44841 4.53601 4.60350 4.75452 4.85883 4.93485 5.04766 5.09618 5.33898 5.45618 6.13843 6.21815 6.83245 7.28431 7.54339 7.99418 8.24449 9.23315 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.043831 B = 0.004013 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.665325 B = 6975.992004 C = 7164.823189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.595 5.595 3 C 0.121 3.879 4 C 0.146 3.854 5 N -0.743 5.743 6 C -0.252 4.252 7 H 0.073 0.927 8 C -0.070 4.070 9 N -0.966 5.966 10 Si 0.976 3.024 11 H -0.268 1.268 12 H -0.287 1.287 13 H -0.293 1.293 14 C 0.555 3.445 15 O -0.568 6.568 16 C -0.134 4.134 17 C -0.067 4.067 18 C 0.050 3.950 19 N -0.261 5.261 20 N -0.270 5.270 21 C 0.080 3.920 22 H 0.103 0.897 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.066 0.934 27 H -0.001 1.001 28 H 0.033 0.967 29 H 0.377 0.623 30 H 0.254 0.746 31 H 0.203 0.797 32 H 0.227 0.773 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.843 -14.946 6.802 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.326 5.326 3 C -0.003 4.003 4 C 0.018 3.982 5 N -0.386 5.386 6 C -0.383 4.383 7 H 0.091 0.909 8 C -0.263 4.263 9 N -0.616 5.616 10 Si 0.804 3.196 11 H -0.192 1.192 12 H -0.214 1.214 13 H -0.220 1.220 14 C 0.342 3.658 15 O -0.447 6.447 16 C -0.148 4.148 17 C -0.096 4.096 18 C -0.114 4.114 19 N -0.102 5.102 20 N -0.111 5.111 21 C -0.085 4.085 22 H 0.121 0.879 23 H 0.107 0.893 24 H 0.104 0.896 25 H 0.126 0.874 26 H 0.084 0.916 27 H 0.017 0.983 28 H 0.051 0.949 29 H 0.209 0.791 30 H 0.063 0.937 31 H 0.220 0.780 32 H 0.244 0.756 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -15.314 -16.499 6.052 23.310 hybrid contribution 1.067 2.246 -0.113 2.489 sum -14.247 -14.253 5.938 21.009 Atomic orbital electron populations 1.22637 0.76216 1.05311 1.04346 1.47739 1.09031 1.04496 1.71324 1.21475 0.97858 0.84503 0.96416 1.20982 0.94488 0.86911 0.95798 1.42373 1.67612 1.22998 1.05642 1.19608 1.29163 1.02593 0.86959 0.90931 1.25589 1.01565 0.98809 1.00337 1.69808 1.45903 1.19917 1.26000 0.85052 0.77185 0.78141 0.79216 1.19219 1.21379 1.22003 1.18431 0.86574 0.84114 0.76632 1.90838 1.15495 1.87497 1.50830 1.21019 0.97450 0.95046 1.01324 1.23499 0.91141 1.00176 0.94791 1.25096 1.02503 0.88985 0.94850 1.72779 1.03539 1.29204 1.04724 1.73121 1.02171 1.20322 1.15445 1.24518 1.00445 0.88911 0.94640 0.87914 0.89285 0.89553 0.87447 0.91593 0.98315 0.94934 0.79083 0.93736 0.77986 0.75636 0.80875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 8.88 127.77 1.13 1.78 16 2 N -0.59 -13.95 2.87 -849.86 -2.44 -16.39 16 3 C 0.12 3.74 5.53 86.38 0.48 4.22 16 4 C 0.15 5.90 6.58 86.38 0.57 6.46 16 5 N -0.74 -38.19 5.60 -343.46 -1.92 -40.11 16 6 C -0.25 -14.28 9.99 84.04 0.84 -13.44 16 7 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 8 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 9 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 10 Si 0.98 46.19 29.55 68.60 2.03 48.21 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 13 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 14 C 0.56 15.26 7.43 86.87 0.65 15.91 16 15 O -0.57 -21.48 16.49 -3.78 -0.06 -21.54 16 16 C -0.13 -2.76 5.31 -19.84 -0.11 -2.87 16 17 C -0.07 -0.74 7.77 22.79 0.18 -0.56 16 18 C 0.05 0.55 11.30 84.74 0.96 1.51 16 19 N -0.26 -5.40 11.48 -57.33 -0.66 -6.06 16 20 N -0.27 -6.74 11.49 -56.54 -0.65 -7.39 16 21 C 0.08 1.91 10.97 85.04 0.93 2.84 16 22 H 0.10 0.44 6.90 -2.39 -0.02 0.42 16 23 H 0.09 1.05 8.03 -2.39 -0.02 1.03 16 24 H 0.09 0.77 5.82 -2.38 -0.01 0.76 16 25 H 0.11 2.83 8.07 -2.39 -0.02 2.81 16 26 H 0.07 2.40 7.36 -2.39 -0.02 2.38 16 27 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 28 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.38 20.22 7.67 -92.71 -0.71 19.50 16 30 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 31 H 0.20 0.57 5.32 -2.91 -0.02 0.55 16 32 H 0.23 0.21 8.06 -2.91 -0.02 0.18 16 33 H 0.17 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -78.86 288.83 3.10 -75.76 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.43 Total: 13.90 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 6.09 Total: 12.27 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -5.39 Total: -128.60 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.06 Total: -21.54 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -78.86 3.10 -75.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714761685.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.370 kcal (2) G-P(sol) polarization free energy of solvation -78.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds