Wall clock time and date at job start Thu Apr 9 2020 12:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 N 1.46503 * 109.47269 * 184.99793 * 4 2 1 6 6 C 1.36937 * 120.00090 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99760 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99689 * 180.02562 * 6 5 4 9 9 N 1.31615 * 120.00363 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99849 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47049 * 89.99568 * 10 8 6 12 12 H 1.48500 * 109.47114 * 209.99925 * 10 8 6 13 13 H 1.48500 * 109.46949 * 329.99811 * 10 8 6 14 14 N 1.46492 * 109.47363 * 120.00126 * 2 1 3 15 15 C 1.34779 * 120.00234 * 275.00260 * 14 2 1 16 16 O 1.21521 * 119.99616 * 0.02562 * 15 14 2 17 17 C 1.48135 * 120.00048 * 179.97438 * 15 14 2 18 18 C 1.40116 * 121.14349 * 179.72299 * 17 15 14 19 19 C 1.38494 * 117.82215 * 179.74348 * 18 17 15 20 20 N 1.31917 * 119.96901 * 0.54009 * 19 18 17 21 21 N 1.28277 * 122.52024 * 359.71532 * 20 19 18 22 22 C 1.31927 * 122.32226 * 0.02562 * 21 20 19 23 23 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 24 24 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 27 27 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 28 28 H 0.97002 * 119.99507 * 359.97438 * 5 4 2 29 29 H 0.97002 * 120.00534 * 180.02562 * 9 8 6 30 30 H 0.97005 * 120.00153 * 94.99794 * 14 2 1 31 31 H 1.08001 * 121.08696 * 359.97438 * 18 17 15 32 32 H 1.08006 * 120.01912 * 180.23368 * 19 18 17 33 33 H 1.07994 * 120.17383 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.1839 -1.4386 -2.2069 7 1 3.6468 -1.8438 -3.0517 8 6 5.5672 -1.5387 -2.1510 9 7 6.2218 -1.0445 -1.1216 10 14 6.5001 -2.3734 -3.5376 11 1 6.8627 -1.3662 -4.5668 12 1 7.7352 -2.9968 -2.9982 13 1 5.6437 -3.4207 -4.1500 14 7 2.0184 -0.6906 1.1961 15 6 2.1471 -0.0183 2.3571 16 8 1.8576 1.1606 2.4118 17 6 2.6405 -0.7168 3.5667 18 6 2.7889 -0.0399 4.7845 19 6 3.2504 -0.7613 5.8729 20 7 3.5442 -2.0404 5.7391 21 7 3.4155 -2.6647 4.6259 22 6 2.9796 -2.0719 3.5310 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6055 -1.7197 -1.2952 27 1 1.7517 -0.1582 -2.1370 28 1 3.9825 -0.4620 -0.4320 29 1 7.1885 -1.1140 -1.0827 30 1 2.2491 -1.6318 1.1525 31 1 2.5477 1.0091 4.8724 32 1 3.3744 -0.2758 6.8297 33 1 2.8842 -2.6312 2.6121 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715949589.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:45 Heat of formation + Delta-G solvation = 33.241357 kcal Electronic energy + Delta-G solvation = -17790.529453 eV Core-core repulsion = 14852.294643 eV Total energy + Delta-G solvation = -2938.234810 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.24479 -39.47296 -36.37278 -33.87218 -33.36765 -32.79354 -31.23106 -29.97518 -25.94049 -25.49039 -24.62303 -22.77660 -21.46037 -20.45893 -18.34228 -17.72003 -17.11304 -16.46223 -15.87590 -15.33802 -15.26691 -14.76208 -14.43721 -13.82418 -13.74490 -13.51032 -13.34951 -12.48705 -12.33065 -12.25826 -11.74222 -11.13029 -10.98830 -10.87368 -10.57879 -10.42888 -10.33498 -10.23455 -10.11460 -9.81745 -9.68120 -9.01039 -8.92975 -7.04663 -5.84770 -3.15490 0.24062 0.73773 2.77075 3.07482 3.39272 3.44430 3.46353 3.57381 3.94144 4.21870 4.40023 4.50199 4.55933 4.71035 5.11764 5.17173 5.33783 5.45691 5.52370 5.54538 5.67043 5.87870 5.94888 5.97889 6.07430 6.27185 6.32482 6.56326 6.74183 7.54231 7.62051 8.16887 8.32585 8.50824 9.44667 9.98755 10.33769 11.37353 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.006091 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.413864 B = 4595.827553 C = 5596.361950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.133 3.867 3 H 0.091 0.909 4 C 0.143 3.857 5 N -0.733 5.733 6 C -0.246 4.246 7 H 0.072 0.928 8 C -0.010 4.010 9 N -0.931 5.931 10 Si 0.908 3.092 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 N -0.698 5.698 15 C 0.562 3.438 16 O -0.533 6.533 17 C -0.125 4.125 18 C -0.061 4.061 19 C 0.034 3.966 20 N -0.232 5.232 21 N -0.241 5.241 22 C 0.077 3.923 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.027 0.973 27 H 0.037 0.963 28 H 0.385 0.615 29 H 0.256 0.744 30 H 0.405 0.595 31 H 0.162 0.838 32 H 0.179 0.821 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.468 1.062 9.852 14.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 H 0.109 0.891 4 C 0.015 3.985 5 N -0.378 5.378 6 C -0.377 4.377 7 H 0.090 0.910 8 C -0.207 4.207 9 N -0.578 5.578 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 N -0.349 5.349 15 C 0.347 3.653 16 O -0.411 6.411 17 C -0.140 4.140 18 C -0.091 4.091 19 C -0.130 4.130 20 N -0.074 5.074 21 N -0.083 5.083 22 C -0.088 4.088 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.219 0.781 29 H 0.066 0.934 30 H 0.241 0.759 31 H 0.180 0.820 32 H 0.196 0.804 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.093 0.406 10.407 14.503 hybrid contribution 0.460 0.609 -1.299 1.507 sum -9.634 1.015 9.108 13.296 Atomic orbital electron populations 1.22110 0.95093 1.02106 1.02383 1.21363 0.93598 0.98122 0.84062 0.89129 1.21008 0.86950 0.97105 0.93426 1.42361 0.99655 1.70389 1.25364 1.19203 0.89425 1.29790 0.99286 0.91041 1.24761 0.96459 1.01386 0.98060 1.69656 1.07357 1.50613 1.30220 0.86179 0.79516 0.78996 0.81395 1.21664 1.21729 1.20686 1.45921 1.65354 1.14512 1.09089 1.17854 0.78193 0.86423 0.82836 1.90768 1.50377 1.15029 1.84887 1.21319 1.01037 0.95557 0.96053 1.22617 0.92630 1.02462 0.91376 1.24363 0.95873 0.92520 1.00245 1.72884 1.09536 1.08239 1.16769 1.73085 1.09552 1.30364 0.95258 1.24632 0.92273 0.92271 0.99629 0.92371 0.91311 0.92379 0.95571 0.94557 0.78089 0.93400 0.75890 0.82020 0.80426 0.80552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.48 37.16 0.35 -1.61 16 2 C 0.13 2.06 2.73 -67.93 -0.19 1.87 16 3 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 4 C 0.14 2.61 5.82 -4.04 -0.02 2.58 16 5 N -0.73 -17.41 5.43 -59.91 -0.33 -17.73 16 6 C -0.25 -6.59 9.99 -15.06 -0.15 -6.74 16 7 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 8 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 9 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 10 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 N -0.70 -10.35 4.48 -54.66 -0.24 -10.59 16 15 C 0.56 8.64 7.77 -12.20 -0.09 8.55 16 16 O -0.53 -9.49 16.16 5.35 0.09 -9.40 16 17 C -0.13 -1.69 5.92 -104.57 -0.62 -2.30 16 18 C -0.06 -0.69 9.77 -38.78 -0.38 -1.07 16 19 C 0.03 0.36 11.30 -17.42 -0.20 0.16 16 20 N -0.23 -3.21 11.48 30.53 0.35 -2.86 16 21 N -0.24 -3.59 11.49 30.78 0.35 -3.24 16 22 C 0.08 1.03 10.84 -16.95 -0.18 0.84 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.39 9.81 7.33 -40.82 -0.30 9.51 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.40 5.58 6.76 -40.82 -0.28 5.31 16 31 H 0.16 1.57 7.80 -52.49 -0.41 1.16 16 32 H 0.18 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.18 2.04 6.53 -52.49 -0.34 1.69 16 LS Contribution 293.01 15.07 4.42 4.42 Total: -1.00 -32.60 293.01 -5.04 -37.65 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -3.80 Total: 9.79 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.58 Total: 1.90 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.86 Total: -61.24 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.60 -5.04 -37.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715949589.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.888 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds