Wall clock time and date at job start Thu Apr 9 2020 12:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 N 1.46503 * 109.47269 * 184.99793 * 4 2 1 6 6 C 1.36937 * 120.00090 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99760 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99689 * 180.02562 * 6 5 4 9 9 N 1.31615 * 120.00363 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99849 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47049 * 89.99568 * 10 8 6 12 12 H 1.48500 * 109.47114 * 209.99925 * 10 8 6 13 13 H 1.48500 * 109.46949 * 329.99811 * 10 8 6 14 14 N 1.46492 * 109.47363 * 120.00126 * 2 1 3 15 15 C 1.34779 * 120.00234 * 275.00260 * 14 2 1 16 16 O 1.21521 * 119.99616 * 0.02562 * 15 14 2 17 17 C 1.48135 * 120.00048 * 179.97438 * 15 14 2 18 18 C 1.40116 * 121.14349 * 179.72299 * 17 15 14 19 19 C 1.38494 * 117.82215 * 179.74348 * 18 17 15 20 20 N 1.31917 * 119.96901 * 0.54009 * 19 18 17 21 21 N 1.28277 * 122.52024 * 359.71532 * 20 19 18 22 22 C 1.31927 * 122.32226 * 0.02562 * 21 20 19 23 23 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 24 24 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 27 27 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 28 28 H 0.97002 * 119.99507 * 359.97438 * 5 4 2 29 29 H 0.97002 * 120.00534 * 180.02562 * 9 8 6 30 30 H 0.97005 * 120.00153 * 94.99794 * 14 2 1 31 31 H 1.08001 * 121.08696 * 359.97438 * 18 17 15 32 32 H 1.08006 * 120.01912 * 180.23368 * 19 18 17 33 33 H 1.07994 * 120.17383 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.1839 -1.4386 -2.2069 7 1 3.6468 -1.8438 -3.0517 8 6 5.5672 -1.5387 -2.1510 9 7 6.2218 -1.0445 -1.1216 10 14 6.5001 -2.3734 -3.5376 11 1 6.8627 -1.3662 -4.5668 12 1 7.7352 -2.9968 -2.9982 13 1 5.6437 -3.4207 -4.1500 14 7 2.0184 -0.6906 1.1961 15 6 2.1471 -0.0183 2.3571 16 8 1.8576 1.1606 2.4118 17 6 2.6405 -0.7168 3.5667 18 6 2.7889 -0.0399 4.7845 19 6 3.2504 -0.7613 5.8729 20 7 3.5442 -2.0404 5.7391 21 7 3.4155 -2.6647 4.6259 22 6 2.9796 -2.0719 3.5310 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6055 -1.7197 -1.2952 27 1 1.7517 -0.1582 -2.1370 28 1 3.9825 -0.4620 -0.4320 29 1 7.1885 -1.1140 -1.0827 30 1 2.2491 -1.6318 1.1525 31 1 2.5477 1.0091 4.8724 32 1 3.3744 -0.2758 6.8297 33 1 2.8842 -2.6312 2.6121 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715949589.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:45 Heat of formation + Delta-G solvation = 8.950922 kcal Electronic energy + Delta-G solvation = -17791.582766 eV Core-core repulsion = 14852.294643 eV Total energy + Delta-G solvation = -2939.288122 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.27122 -40.67773 -37.79721 -35.55890 -34.49322 -33.82745 -32.84387 -31.41939 -27.45015 -26.69896 -25.60581 -24.52330 -22.73143 -21.70565 -19.60527 -19.03936 -18.66476 -17.43170 -17.14330 -16.74555 -16.46797 -16.16879 -15.64239 -15.34551 -15.18301 -14.95108 -14.47473 -13.97468 -13.65144 -13.57656 -13.09219 -12.80101 -12.65801 -12.17367 -12.09480 -11.90303 -11.72104 -11.58733 -11.34926 -11.23430 -10.98033 -10.75485 -10.19098 -9.02129 -7.95489 -5.24775 -0.78170 -0.19606 1.49059 1.49576 1.58096 1.62376 1.92529 2.55080 2.55910 3.01371 3.20071 3.39561 3.47951 3.49805 3.77867 3.83036 4.02134 4.28138 4.33307 4.48679 4.56563 4.73029 4.78037 4.85873 4.94267 5.07353 5.09659 5.30474 5.44959 5.51822 6.25179 6.34523 6.97248 7.33178 7.52248 8.06474 8.29201 9.27331 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.006091 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.413864 B = 4595.827553 C = 5596.361950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.140 3.860 3 H 0.067 0.933 4 C 0.143 3.857 5 N -0.745 5.745 6 C -0.242 4.242 7 H 0.081 0.919 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.971 3.029 11 H -0.290 1.290 12 H -0.299 1.299 13 H -0.266 1.266 14 N -0.696 5.696 15 C 0.564 3.436 16 O -0.562 6.562 17 C -0.141 4.141 18 C -0.052 4.052 19 C 0.048 3.952 20 N -0.257 5.257 21 N -0.270 5.270 22 C 0.075 3.925 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.373 0.627 29 H 0.249 0.751 30 H 0.410 0.590 31 H 0.181 0.819 32 H 0.223 0.777 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.599 0.923 9.940 15.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.035 3.965 3 H 0.085 0.915 4 C 0.016 3.984 5 N -0.388 5.388 6 C -0.374 4.374 7 H 0.099 0.901 8 C -0.266 4.266 9 N -0.619 5.619 10 Si 0.800 3.200 11 H -0.218 1.218 12 H -0.226 1.226 13 H -0.191 1.191 14 N -0.346 5.346 15 C 0.349 3.651 16 O -0.441 6.441 17 C -0.155 4.155 18 C -0.082 4.082 19 C -0.116 4.116 20 N -0.098 5.098 21 N -0.111 5.111 22 C -0.091 4.091 23 H 0.074 0.926 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.205 0.795 29 H 0.058 0.942 30 H 0.247 0.753 31 H 0.199 0.801 32 H 0.240 0.760 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -11.275 0.228 10.474 15.391 hybrid contribution 0.729 0.716 -1.295 1.650 sum -10.545 0.944 9.179 14.013 Atomic orbital electron populations 1.22024 0.92192 1.03371 1.03001 1.21228 0.95645 0.96374 0.83232 0.91484 1.21182 0.83933 0.98287 0.94963 1.42545 1.01903 1.69995 1.24340 1.19630 0.89792 1.28260 0.99698 0.90129 1.25528 0.97607 1.03052 1.00378 1.69814 1.06960 1.52854 1.32291 0.85175 0.77957 0.78172 0.78650 1.21778 1.22640 1.19076 1.45905 1.65136 1.14705 1.08902 1.18078 0.77570 0.86089 0.83316 1.90747 1.51810 1.16153 1.85404 1.21247 1.02358 0.95759 0.96130 1.22954 0.91198 1.03301 0.90710 1.25004 0.93687 0.91273 1.01657 1.72798 1.10506 1.09891 1.16638 1.73030 1.10755 1.31411 0.95868 1.24747 0.92113 0.92414 0.99777 0.92632 0.89816 0.90760 0.93841 0.93989 0.79451 0.94222 0.75315 0.80141 0.76018 0.79635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.48 71.98 0.68 -2.66 16 2 C 0.14 4.20 2.73 44.99 0.12 4.32 16 3 H 0.07 2.35 7.58 -2.39 -0.02 2.34 16 4 C 0.14 5.00 5.82 86.38 0.50 5.51 16 5 N -0.74 -35.09 5.43 -343.45 -1.87 -36.96 16 6 C -0.24 -12.78 9.99 84.03 0.84 -11.94 16 7 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 8 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 9 N -0.97 -58.15 13.06 21.65 0.28 -57.87 16 10 Si 0.97 45.03 29.55 68.60 2.03 47.06 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 14 N -0.70 -20.26 4.48 -445.13 -1.99 -22.26 16 15 C 0.56 17.10 7.77 86.87 0.67 17.78 16 16 O -0.56 -19.80 16.16 -3.78 -0.06 -19.86 16 17 C -0.14 -3.69 5.92 -19.83 -0.12 -3.81 16 18 C -0.05 -1.09 9.77 22.79 0.22 -0.86 16 19 C 0.05 0.92 11.30 84.74 0.96 1.87 16 20 N -0.26 -6.84 11.48 -57.34 -0.66 -7.49 16 21 N -0.27 -7.97 11.49 -56.54 -0.65 -8.62 16 22 C 0.07 1.99 10.84 85.04 0.92 2.91 16 23 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.37 19.22 7.33 -92.71 -0.68 18.54 16 29 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.41 11.09 6.76 -92.70 -0.63 10.46 16 31 H 0.18 3.09 7.80 -2.91 -0.02 3.07 16 32 H 0.22 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.19 4.30 6.53 -2.91 -0.02 4.28 16 Total: -1.00 -69.85 293.01 2.20 -67.66 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: -0.16 Total: 28.84 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 5.27 Total: 9.51 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -4.88 Total: -133.20 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.06 Total: -19.86 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.85 2.20 -67.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715949589.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.608 kcal (2) G-P(sol) polarization free energy of solvation -69.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds