Wall clock time and date at job start Thu Apr 9 2020 12:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 N 1.46501 * 109.47349 * 175.00381 * 4 2 1 6 6 C 1.34775 * 119.99874 * 180.02562 * 5 4 2 7 7 O 1.21514 * 120.00133 * 359.97438 * 6 5 4 8 8 C 1.48136 * 119.99694 * 179.97438 * 6 5 4 9 9 C 1.40108 * 121.14418 * 179.71589 * 8 6 5 10 10 C 1.38508 * 117.82335 * 179.73942 * 9 8 6 11 11 N 1.31909 * 119.96587 * 0.54873 * 10 9 8 12 12 N 1.28275 * 122.52144 * 359.71418 * 11 10 9 13 13 C 1.31929 * 122.32190 * 359.97438 * 12 11 10 14 14 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 15 15 C 1.36931 * 119.99788 * 84.99932 * 14 2 1 16 16 H 1.08002 * 120.00438 * 0.02562 * 15 14 2 17 17 C 1.38817 * 119.99680 * 179.72358 * 15 14 2 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48498 * 109.47174 * 90.00121 * 19 17 15 21 21 H 1.48501 * 109.47062 * 210.00072 * 19 17 15 22 22 H 1.48504 * 109.46913 * 329.99871 * 19 17 15 23 23 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 25 25 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 26 26 H 1.09009 * 109.46837 * 294.99855 * 4 2 1 27 27 H 1.09000 * 109.47433 * 54.99587 * 4 2 1 28 28 H 0.97000 * 120.00018 * 359.97438 * 5 4 2 29 29 H 1.08003 * 121.09174 * 0.02562 * 9 8 6 30 30 H 1.08007 * 120.01440 * 180.23555 * 10 9 8 31 31 H 1.08000 * 120.17194 * 180.02562 * 13 12 11 32 32 H 0.97000 * 119.99792 * 264.99726 * 14 2 1 33 33 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5687 -1.8851 3.1413 8 6 5.6493 -1.5359 2.1311 9 6 6.3734 -2.1523 3.1601 10 6 7.7509 -2.2190 3.0310 11 7 8.3390 -1.7017 1.9697 12 7 7.6825 -1.1313 1.0268 13 6 6.3681 -1.0205 1.0494 14 7 2.0183 -0.6907 -1.1962 15 6 2.1491 -0.0075 -2.3757 16 1 1.8926 1.0405 -2.4242 17 6 2.6172 -0.6605 -3.5077 18 7 2.9303 -1.9375 -3.4485 19 14 2.8029 0.2732 -5.1149 20 1 4.1654 0.8587 -5.1927 21 1 2.5981 -0.6569 -6.2543 22 1 1.7929 1.3602 -5.1754 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.7517 -0.1583 2.1370 27 1 1.6054 -1.7198 1.2952 28 1 3.9824 -0.4627 0.4316 29 1 5.8735 -2.5661 4.0234 30 1 8.3435 -2.6899 3.8015 31 1 5.8503 -0.5336 0.2362 32 1 2.2490 -1.6318 -1.1526 33 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731620554.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:49 Heat of formation + Delta-G solvation = 9.309997 kcal Electronic energy + Delta-G solvation = -17717.274964 eV Core-core repulsion = 14778.002412 eV Total energy + Delta-G solvation = -2939.272552 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.26252 -40.55550 -37.96970 -35.39006 -34.41984 -33.88266 -33.26127 -30.57144 -27.96472 -26.08613 -25.67888 -25.24684 -21.97560 -21.73521 -19.58219 -19.02308 -18.73003 -17.40463 -17.01908 -16.82571 -16.47749 -16.20789 -15.86492 -15.35747 -15.19340 -14.65736 -14.46574 -13.90344 -13.66745 -13.45599 -13.07844 -12.77551 -12.50669 -12.17687 -12.08603 -11.73858 -11.67334 -11.57538 -11.36033 -11.24348 -10.97202 -10.75809 -10.15837 -9.02387 -7.91753 -5.20350 -0.78381 -0.20085 1.50810 1.51922 1.59000 1.62095 1.95747 2.54379 2.58198 3.01192 3.20673 3.42754 3.49993 3.50948 3.80652 3.89019 3.96487 4.34153 4.39365 4.53565 4.64820 4.73328 4.73794 4.84619 5.07883 5.08339 5.25474 5.30506 5.57018 5.58415 6.29072 6.35511 6.95294 7.37273 7.52545 8.09253 8.33002 9.30663 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.006230 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.854099 B = 4493.576933 C = 5667.243260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.063 0.937 4 C 0.122 3.878 5 N -0.700 5.700 6 C 0.561 3.439 7 O -0.562 6.562 8 C -0.141 4.141 9 C -0.048 4.048 10 C 0.048 3.952 11 N -0.258 5.258 12 N -0.272 5.272 13 C 0.073 3.927 14 N -0.732 5.732 15 C -0.233 4.233 16 H 0.079 0.921 17 C -0.069 4.069 18 N -0.966 5.966 19 Si 0.963 3.037 20 H -0.288 1.288 21 H -0.304 1.304 22 H -0.271 1.271 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.411 0.589 29 H 0.185 0.815 30 H 0.225 0.775 31 H 0.180 0.820 32 H 0.373 0.627 33 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.943 2.106 14.260 14.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.081 0.919 4 C -0.002 4.002 5 N -0.350 5.350 6 C 0.347 3.653 7 O -0.443 6.443 8 C -0.155 4.155 9 C -0.078 4.078 10 C -0.116 4.116 11 N -0.099 5.099 12 N -0.112 5.112 13 C -0.092 4.092 14 N -0.374 5.374 15 C -0.365 4.365 16 H 0.097 0.903 17 C -0.261 4.261 18 N -0.616 5.616 19 Si 0.793 3.207 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.196 1.196 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.063 0.937 26 H 0.109 0.891 27 H 0.077 0.923 28 H 0.249 0.751 29 H 0.202 0.798 30 H 0.241 0.759 31 H 0.197 0.803 32 H 0.205 0.795 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.899 2.279 13.958 14.967 hybrid contribution -1.108 -0.254 -0.981 1.501 sum 3.791 2.025 12.977 13.670 Atomic orbital electron populations 1.22233 0.96633 1.01244 1.01448 1.20727 0.93736 0.95798 0.84906 0.91930 1.21723 0.78505 1.01130 0.98874 1.45927 1.08831 1.57466 1.22798 1.18059 0.86440 0.78219 0.82604 1.90743 1.69879 1.49333 1.34300 1.21234 0.94767 1.01871 0.97642 1.22968 0.95014 0.91700 0.98126 1.25045 0.93263 0.95794 0.97512 1.72808 1.33012 1.04836 0.99226 1.73056 1.07282 1.11559 1.19299 1.24717 0.92450 0.94752 0.97300 1.42620 1.78359 1.10323 1.06064 1.19555 1.34553 0.94219 0.88139 0.90294 1.25407 1.03106 0.96621 1.00987 1.69798 1.52445 1.10104 1.29292 0.85296 0.77825 0.77460 0.80085 1.21574 1.23071 1.19598 0.93831 0.90636 0.93743 0.89110 0.92299 0.75134 0.79781 0.75856 0.80289 0.79504 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.74 9.49 71.98 0.68 -4.05 16 2 C 0.16 5.24 3.05 44.99 0.14 5.37 16 3 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 4 C 0.12 3.60 5.23 86.38 0.45 4.05 16 5 N -0.70 -20.86 5.35 -465.68 -2.49 -23.35 16 6 C 0.56 16.64 7.80 86.87 0.68 17.32 16 7 O -0.56 -18.94 16.49 -3.76 -0.06 -19.01 16 8 C -0.14 -3.64 5.92 -19.84 -0.12 -3.76 16 9 C -0.05 -0.95 9.77 22.79 0.22 -0.73 16 10 C 0.05 0.88 11.30 84.75 0.96 1.84 16 11 N -0.26 -6.83 11.48 -57.33 -0.66 -7.49 16 12 N -0.27 -8.24 11.49 -56.53 -0.65 -8.89 16 13 C 0.07 2.03 10.84 85.04 0.92 2.95 16 14 N -0.73 -32.32 4.56 -322.93 -1.47 -33.79 16 15 C -0.23 -11.64 9.93 84.04 0.83 -10.81 16 16 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 17 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 18 N -0.97 -56.05 13.06 21.65 0.28 -55.76 16 19 Si 0.96 44.06 29.55 68.60 2.03 46.09 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 23 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 28 H 0.41 12.50 6.29 -92.71 -0.58 11.92 16 29 H 0.18 2.81 7.80 -2.91 -0.02 2.79 16 30 H 0.23 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.18 4.76 6.53 -2.91 -0.02 4.74 16 32 H 0.37 18.26 7.80 -92.71 -0.72 17.54 16 33 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 Total: -1.00 -65.56 293.56 2.05 -63.51 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: -0.16 Total: 29.72 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 5.24 Total: 8.97 kcal Atomic # 7 Polarization: -124.29 SS G_CDS: -4.99 Total: -129.28 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.06 Total: -19.01 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -65.56 2.05 -63.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731620554.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.817 kcal (2) G-P(sol) polarization free energy of solvation -65.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds