Wall clock time and date at job start Thu Apr 9 2020 12:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 N 1.46501 * 109.47084 * 175.00139 * 4 2 1 6 6 C 1.34773 * 119.99786 * 180.02562 * 5 4 2 7 7 O 1.21474 * 120.00359 * 359.97438 * 6 5 4 8 8 C 1.48536 * 119.99998 * 179.97438 * 6 5 4 9 9 N 1.32465 * 119.18446 * 359.72791 * 8 6 5 10 10 C 1.32115 * 120.76510 * 179.75781 * 9 8 6 11 11 C 1.38794 * 119.16478 * 0.50809 * 10 9 8 12 12 C 1.38798 * 118.51001 * 359.74612 * 11 10 9 13 13 N 1.32113 * 119.16199 * 0.02562 * 12 11 10 14 14 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 15 15 C 1.36945 * 119.99649 * 85.00202 * 14 2 1 16 16 H 1.07997 * 120.00244 * 359.97438 * 15 14 2 17 17 C 1.38812 * 119.99544 * 180.02562 * 15 14 2 18 18 N 1.31613 * 120.00617 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99539 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47491 * 90.00011 * 19 17 15 21 21 H 1.48503 * 109.46935 * 209.99973 * 19 17 15 22 22 H 1.48500 * 109.47157 * 329.99526 * 19 17 15 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 27 27 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 28 28 H 0.96999 * 119.99782 * 359.97438 * 5 4 2 29 29 H 1.07997 * 120.41604 * 180.25684 * 10 9 8 30 30 H 1.08007 * 120.74817 * 179.77120 * 11 10 9 31 31 H 1.08004 * 120.42196 * 180.02562 * 12 11 10 32 32 H 0.96996 * 120.00792 * 265.00493 * 14 2 1 33 33 H 0.97006 * 120.00607 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5689 -1.8850 3.1410 8 6 5.6533 -1.5363 2.1310 9 7 6.2952 -1.0385 1.0847 10 6 7.6117 -1.1124 1.0017 11 6 8.3202 -1.7300 2.0229 12 6 7.6145 -2.2448 3.1015 13 7 6.2983 -2.1323 3.1225 14 7 2.0183 -0.6907 -1.1961 15 6 2.1491 -0.0075 -2.3757 16 1 1.8919 1.0403 -2.4244 17 6 2.6113 -0.6621 -3.5092 18 7 2.9244 -1.9391 -3.4501 19 14 2.7905 0.2700 -5.1182 20 1 4.1531 0.8541 -5.2029 21 1 2.5794 -0.6610 -6.2557 22 1 1.7812 1.3578 -5.1751 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.7517 -0.1583 2.1369 27 1 1.6054 -1.7199 1.2952 28 1 3.9823 -0.4628 0.4316 29 1 8.1296 -0.7010 0.1480 30 1 9.3966 -1.8078 1.9795 31 1 8.1347 -2.7313 3.9134 32 1 2.2490 -1.6318 -1.1526 33 1 3.2477 -2.3965 -4.2421 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731627767.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:53 Heat of formation + Delta-G solvation = 28.963047 kcal Electronic energy + Delta-G solvation = -17725.728587 eV Core-core repulsion = 14787.308255 eV Total energy + Delta-G solvation = -2938.420332 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19714 -38.97228 -36.29494 -34.11320 -33.34886 -32.39300 -31.64344 -28.72872 -26.62620 -24.76663 -24.41081 -23.53419 -20.73926 -20.14915 -18.20632 -17.64685 -17.20310 -16.08952 -15.57682 -15.46798 -15.10881 -14.82833 -14.18934 -13.70000 -13.69025 -13.58733 -12.97876 -12.23729 -12.08554 -11.95397 -11.36672 -11.30186 -11.01062 -10.86019 -10.74630 -10.34466 -10.02073 -9.85168 -9.80735 -9.69728 -9.37787 -8.96440 -8.64603 -7.01671 -5.78460 -3.08704 0.40834 0.96643 2.81717 3.04047 3.41653 3.47347 3.48767 3.89221 3.94129 4.37187 4.42878 4.56914 4.78181 4.88803 5.19208 5.45612 5.50168 5.55712 5.59439 5.95201 6.07703 6.12200 6.19978 6.31529 6.57647 6.74208 6.80454 6.81443 7.04487 7.67573 7.68529 8.03939 8.38371 8.47388 9.50479 10.05304 10.40828 11.43477 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.019755 B = 0.006258 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.017726 B = 4473.295436 C = 5624.085641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.055 0.945 4 C 0.114 3.886 5 N -0.686 5.686 6 C 0.577 3.423 7 O -0.521 6.521 8 C 0.289 3.711 9 N -0.483 5.483 10 C 0.148 3.852 11 C -0.215 4.215 12 C 0.141 3.859 13 N -0.472 5.472 14 N -0.723 5.723 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.010 4.010 18 N -0.929 5.929 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.293 1.293 22 H -0.282 1.282 23 H 0.058 0.942 24 H 0.040 0.960 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.422 0.578 29 H 0.176 0.824 30 H 0.152 0.848 31 H 0.174 0.826 32 H 0.385 0.615 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.513 2.220 10.398 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.073 0.927 4 C -0.011 4.011 5 N -0.339 5.339 6 C 0.358 3.642 7 O -0.395 6.395 8 C 0.019 3.981 9 N -0.199 5.199 10 C -0.019 4.019 11 C -0.237 4.237 12 C -0.026 4.026 13 N -0.187 5.187 14 N -0.366 5.366 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.206 4.206 18 N -0.577 5.577 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.208 1.208 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.261 0.739 29 H 0.193 0.807 30 H 0.170 0.830 31 H 0.191 0.809 32 H 0.219 0.781 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.023 2.086 10.965 13.746 hybrid contribution 1.527 0.151 -1.460 2.118 sum 9.550 2.237 9.505 13.658 Atomic orbital electron populations 1.22359 0.98131 1.01337 1.00426 1.20516 0.92758 0.95812 0.86010 0.92708 1.21826 0.78553 1.01561 0.99127 1.45826 1.08347 1.56846 1.22901 1.17255 0.83678 0.79779 0.83509 1.90768 1.67786 1.47536 1.33407 1.23052 0.96466 0.92132 0.86441 1.68432 1.10785 1.17052 1.23664 1.23373 0.89319 0.91778 0.97390 1.23169 1.03279 1.00632 0.96623 1.23354 0.89306 0.93049 0.96871 1.68257 1.09955 1.13511 1.26998 1.42467 1.78039 1.10823 1.05237 1.19213 1.36890 0.93866 0.87254 0.91091 1.24734 1.02023 0.95886 0.97995 1.69668 1.50566 1.08624 1.28878 0.86216 0.77749 0.78586 0.83745 1.21750 1.21890 1.20799 0.92245 0.94136 0.93148 0.91355 0.91365 0.73924 0.80688 0.82996 0.80908 0.78063 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.49 37.16 0.35 -2.46 16 2 C 0.16 3.04 3.05 -67.93 -0.21 2.83 16 3 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 4 C 0.11 2.00 5.23 -4.04 -0.02 1.98 16 5 N -0.69 -12.65 5.38 -61.02 -0.33 -12.98 16 6 C 0.58 11.01 7.85 -12.01 -0.09 10.92 16 7 O -0.52 -11.08 16.86 5.39 0.09 -10.99 16 8 C 0.29 4.96 7.60 -157.07 -1.19 3.76 16 9 N -0.48 -7.55 9.58 -11.12 -0.11 -7.66 16 10 C 0.15 1.66 11.30 -17.22 -0.19 1.47 16 11 C -0.21 -1.88 10.18 -39.17 -0.40 -2.28 16 12 C 0.14 1.50 11.30 -17.22 -0.19 1.30 16 13 N -0.47 -7.40 10.13 -11.12 -0.11 -7.51 16 14 N -0.72 -17.26 4.56 -53.43 -0.24 -17.51 16 15 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 19 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.42 8.13 7.44 -40.82 -0.30 7.82 16 29 H 0.18 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.15 0.71 8.06 -52.48 -0.42 0.28 16 31 H 0.17 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.39 10.04 7.80 -40.82 -0.32 9.72 16 33 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 296.22 15.07 4.46 4.46 Total: -1.00 -32.97 296.22 -6.70 -39.67 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -3.97 Total: 11.77 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: -2.20 Total: 10.60 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -0.07 Total: -72.35 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.97 -6.70 -39.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731627767.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.638 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds