Wall clock time and date at job start Thu Apr 9 2020 12:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 N 1.46501 * 109.47084 * 175.00139 * 4 2 1 6 6 C 1.34773 * 119.99786 * 180.02562 * 5 4 2 7 7 O 1.21474 * 120.00359 * 359.97438 * 6 5 4 8 8 C 1.48536 * 119.99998 * 179.97438 * 6 5 4 9 9 N 1.32465 * 119.18446 * 359.72791 * 8 6 5 10 10 C 1.32115 * 120.76510 * 179.75781 * 9 8 6 11 11 C 1.38794 * 119.16478 * 0.50809 * 10 9 8 12 12 C 1.38798 * 118.51001 * 359.74612 * 11 10 9 13 13 N 1.32113 * 119.16199 * 0.02562 * 12 11 10 14 14 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 15 15 C 1.36945 * 119.99649 * 85.00202 * 14 2 1 16 16 H 1.07997 * 120.00244 * 359.97438 * 15 14 2 17 17 C 1.38812 * 119.99544 * 180.02562 * 15 14 2 18 18 N 1.31613 * 120.00617 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99539 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47491 * 90.00011 * 19 17 15 21 21 H 1.48503 * 109.46935 * 209.99973 * 19 17 15 22 22 H 1.48500 * 109.47157 * 329.99526 * 19 17 15 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 27 27 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 28 28 H 0.96999 * 119.99782 * 359.97438 * 5 4 2 29 29 H 1.07997 * 120.41604 * 180.25684 * 10 9 8 30 30 H 1.08007 * 120.74817 * 179.77120 * 11 10 9 31 31 H 1.08004 * 120.42196 * 180.02562 * 12 11 10 32 32 H 0.96996 * 120.00792 * 265.00493 * 14 2 1 33 33 H 0.97006 * 120.00607 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5689 -1.8850 3.1410 8 6 5.6533 -1.5363 2.1310 9 7 6.2952 -1.0385 1.0847 10 6 7.6117 -1.1124 1.0017 11 6 8.3202 -1.7300 2.0229 12 6 7.6145 -2.2448 3.1015 13 7 6.2983 -2.1323 3.1225 14 7 2.0183 -0.6907 -1.1961 15 6 2.1491 -0.0075 -2.3757 16 1 1.8919 1.0403 -2.4244 17 6 2.6113 -0.6621 -3.5092 18 7 2.9244 -1.9391 -3.4501 19 14 2.7905 0.2700 -5.1182 20 1 4.1531 0.8541 -5.2029 21 1 2.5794 -0.6610 -6.2557 22 1 1.7812 1.3578 -5.1751 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.7517 -0.1583 2.1369 27 1 1.6054 -1.7199 1.2952 28 1 3.9823 -0.4628 0.4316 29 1 8.1296 -0.7010 0.1480 30 1 9.3966 -1.8078 1.9795 31 1 8.1347 -2.7313 3.9134 32 1 2.2490 -1.6318 -1.1526 33 1 3.2477 -2.3965 -4.2421 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731627767.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:52 Heat of formation + Delta-G solvation = 3.781416 kcal Electronic energy + Delta-G solvation = -17726.820544 eV Core-core repulsion = 14787.308255 eV Total energy + Delta-G solvation = -2939.512289 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.22579 -40.37182 -37.92987 -35.44567 -34.73855 -33.75079 -33.03084 -30.56357 -27.94067 -26.01677 -25.58220 -25.21156 -22.02396 -21.73216 -19.62029 -19.06956 -18.64543 -17.08242 -16.97839 -16.86223 -16.52498 -16.05083 -15.77709 -15.23981 -15.08083 -14.65384 -14.48512 -13.89250 -13.65628 -13.42923 -13.06789 -12.75648 -12.49534 -12.28745 -12.16213 -12.05084 -11.71679 -11.65303 -11.22390 -10.94231 -10.74987 -10.36890 -10.11163 -9.00706 -7.88883 -5.18279 -0.59825 0.09715 1.51190 1.51896 1.55480 1.60097 1.79370 2.59610 2.81267 2.92356 3.30986 3.45935 3.66317 3.87283 3.91937 3.97734 4.10789 4.38102 4.38699 4.62844 4.72588 4.76869 4.83394 5.08308 5.25689 5.29807 5.32317 5.57483 5.58337 5.91887 6.30930 6.34631 6.86519 7.06085 7.38219 8.10113 8.34767 9.34029 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.019755 B = 0.006258 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.017726 B = 4473.295436 C = 5624.085641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.061 0.939 4 C 0.120 3.880 5 N -0.686 5.686 6 C 0.573 3.427 7 O -0.554 6.554 8 C 0.256 3.744 9 N -0.511 5.511 10 C 0.128 3.872 11 C -0.176 4.176 12 C 0.130 3.870 13 N -0.504 5.504 14 N -0.732 5.732 15 C -0.234 4.234 16 H 0.079 0.921 17 C -0.072 4.072 18 N -0.968 5.968 19 Si 0.969 3.031 20 H -0.287 1.287 21 H -0.302 1.302 22 H -0.271 1.271 23 H 0.046 0.954 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.418 0.582 29 H 0.206 0.794 30 H 0.206 0.794 31 H 0.215 0.785 32 H 0.371 0.629 33 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.261 3.247 10.830 15.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.050 3.950 3 H 0.079 0.921 4 C -0.004 4.004 5 N -0.338 5.338 6 C 0.356 3.644 7 O -0.431 6.431 8 C -0.014 4.014 9 N -0.229 5.229 10 C -0.037 4.037 11 C -0.198 4.198 12 C -0.035 4.035 13 N -0.220 5.220 14 N -0.373 5.373 15 C -0.365 4.365 16 H 0.097 0.903 17 C -0.264 4.264 18 N -0.619 5.619 19 Si 0.799 3.201 20 H -0.214 1.214 21 H -0.229 1.229 22 H -0.196 1.196 23 H 0.065 0.935 24 H 0.094 0.906 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.255 0.745 29 H 0.223 0.777 30 H 0.223 0.777 31 H 0.231 0.769 32 H 0.203 0.797 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.761 3.162 11.421 15.353 hybrid contribution 1.111 -0.150 -1.503 1.876 sum 10.873 3.013 9.918 15.022 Atomic orbital electron populations 1.22220 0.96260 1.01314 1.01558 1.20703 0.93896 0.95616 0.84753 0.92120 1.21782 0.78385 1.01115 0.99152 1.45829 1.08516 1.56772 1.22673 1.17669 0.85082 0.78851 0.82841 1.90719 1.68970 1.48965 1.34477 1.22483 0.95449 0.95247 0.88191 1.68341 1.13196 1.17798 1.23520 1.24072 0.88114 0.92188 0.99290 1.23706 1.05533 0.96495 0.94021 1.24173 0.87801 0.92827 0.98689 1.68187 1.12606 1.14118 1.27097 1.42606 1.78356 1.10241 1.06120 1.19585 1.34739 0.94192 0.88004 0.90294 1.25478 1.03052 0.96694 1.01210 1.69833 1.52628 1.10225 1.29197 0.85204 0.77862 0.77363 0.79671 1.21417 1.22887 1.19561 0.93463 0.90569 0.93784 0.89235 0.92407 0.74461 0.77725 0.77687 0.76866 0.79686 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 9.49 71.98 0.68 -4.44 16 2 C 0.16 5.98 3.05 44.99 0.14 6.12 16 3 H 0.06 2.24 8.08 -2.39 -0.02 2.22 16 4 C 0.12 4.23 5.23 86.38 0.45 4.69 16 5 N -0.69 -25.99 5.38 -465.29 -2.50 -28.49 16 6 C 0.57 22.65 7.85 86.99 0.68 23.33 16 7 O -0.55 -24.43 16.86 -3.63 -0.06 -24.49 16 8 C 0.26 8.92 7.60 137.68 1.05 9.96 16 9 N -0.51 -15.91 9.58 -189.10 -1.81 -17.72 16 10 C 0.13 2.60 11.30 84.78 0.96 3.56 16 11 C -0.18 -2.39 10.18 22.54 0.23 -2.16 16 12 C 0.13 2.41 11.30 84.78 0.96 3.37 16 13 N -0.50 -15.58 10.13 -189.09 -1.92 -17.50 16 14 N -0.73 -35.32 4.56 -322.94 -1.47 -36.79 16 15 C -0.23 -12.37 9.93 84.03 0.83 -11.53 16 16 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 17 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 18 N -0.97 -58.34 13.06 21.65 0.28 -58.06 16 19 Si 0.97 45.12 29.55 68.60 2.03 47.14 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 21 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 24 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 27 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.42 16.58 7.44 -92.71 -0.69 15.89 16 29 H 0.21 2.68 8.06 -2.91 -0.02 2.65 16 30 H 0.21 0.57 8.06 -2.91 -0.02 0.55 16 31 H 0.21 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.37 19.89 7.80 -92.71 -0.72 19.17 16 33 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 Total: -1.00 -74.25 296.22 0.72 -73.52 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -0.27 Total: 33.03 kcal Atomic # 6 Polarization: 22.90 SS G_CDS: 6.45 Total: 29.35 kcal Atomic # 7 Polarization: -151.14 SS G_CDS: -7.42 Total: -158.56 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.06 Total: -24.49 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -74.25 0.72 -73.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731627767.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.302 kcal (2) G-P(sol) polarization free energy of solvation -74.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds