Wall clock time and date at job start Thu Apr 9 2020 12:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46500 * 109.47170 * 175.00049 * 4 2 1 6 6 C 1.36937 * 120.00196 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99920 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99841 * 179.97438 * 6 5 4 9 9 N 1.31612 * 120.00394 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99743 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47328 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47338 * 120.00126 * 10 8 6 13 13 H 1.48502 * 109.47016 * 240.00216 * 10 8 6 14 14 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 15 15 C 1.34769 * 119.99686 * 84.99974 * 14 2 1 16 16 O 1.21514 * 120.00586 * 0.02562 * 15 14 2 17 17 C 1.48159 * 119.99624 * 180.02562 * 15 14 2 18 18 C 1.39438 * 120.09252 * 179.97438 * 17 15 14 19 19 N 1.32089 * 119.87068 * 180.02562 * 18 17 15 20 20 C 1.32140 * 120.06777 * 0.02562 * 19 18 17 21 21 C 1.38726 * 120.19684 * 0.02562 * 20 19 18 22 22 N 1.31799 * 120.12647 * 359.72150 * 21 20 19 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 27 27 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 28 28 H 0.97004 * 120.00188 * 0.02562 * 5 4 2 29 29 H 0.97000 * 120.00161 * 179.97438 * 9 8 6 30 30 H 0.97000 * 119.99634 * 265.00306 * 14 2 1 31 31 H 1.07992 * 120.07022 * 359.97438 * 18 17 15 32 32 H 1.08007 * 119.89957 * 180.02562 * 20 19 18 33 33 H 1.08004 * 119.93581 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1838 -1.4379 2.2074 7 1 3.6467 -1.8430 3.0522 8 6 5.5672 -1.5380 2.1515 9 7 6.2217 -1.0447 1.1217 10 14 6.4999 -2.3728 3.5381 11 1 5.5396 -2.8382 4.5709 12 1 7.2508 -3.5354 3.0000 13 1 7.4509 -1.4079 4.1462 14 7 2.0184 -0.6906 -1.1962 15 6 2.1472 -0.0183 -2.3570 16 8 1.8586 1.1608 -2.4116 17 6 2.6406 -0.7169 -3.5669 18 6 2.7740 -0.0233 -4.7691 19 7 3.2138 -0.6506 -5.8452 20 6 3.5263 -1.9330 -5.7826 21 6 3.3936 -2.6260 -4.5882 22 7 2.9602 -2.0065 -3.5086 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.7516 -0.1583 2.1369 27 1 1.6053 -1.7198 1.2952 28 1 3.9825 -0.4622 0.4320 29 1 7.1884 -1.1143 1.0829 30 1 2.2491 -1.6318 -1.1525 31 1 2.5175 1.0245 -4.8207 32 1 3.8860 -2.4431 -6.6640 33 1 3.6506 -3.6740 -4.5417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732986674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:54 Heat of formation + Delta-G solvation = 23.744020 kcal Electronic energy + Delta-G solvation = -17793.883860 eV Core-core repulsion = 14855.237215 eV Total energy + Delta-G solvation = -2938.646646 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.26161 -39.24536 -36.21954 -34.55763 -33.60353 -31.96951 -31.06646 -29.85401 -25.81522 -25.42187 -24.58603 -22.71136 -21.43706 -20.21111 -18.20108 -17.62914 -17.07902 -16.77442 -15.82457 -15.34067 -15.11295 -14.67750 -14.20996 -13.87426 -13.63079 -13.27313 -12.95483 -12.39208 -12.23646 -12.15398 -11.80440 -11.63134 -11.38476 -10.92389 -10.84822 -10.48101 -10.17772 -10.02673 -9.75425 -9.56307 -9.19693 -8.92892 -8.74593 -6.96322 -5.78060 -3.07993 0.32287 0.93920 2.82472 3.22105 3.42027 3.47523 3.49913 3.76787 3.95501 4.06045 4.34166 4.56784 4.76448 5.03212 5.10834 5.27104 5.38446 5.46512 5.54311 5.64193 5.99584 6.07054 6.13386 6.17663 6.37986 6.44954 6.67018 6.86796 7.01134 7.48336 7.68174 7.82684 8.37061 8.39640 9.51215 10.07159 10.42275 11.44264 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.006093 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.422392 B = 4594.455489 C = 5580.889702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.130 3.870 3 H 0.090 0.910 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.242 4.242 7 H 0.072 0.928 8 C -0.012 4.012 9 N -0.930 5.930 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 N -0.685 5.685 15 C 0.574 3.426 16 O -0.538 6.538 17 C 0.038 3.962 18 C 0.105 3.895 19 N -0.443 5.443 20 C 0.065 3.935 21 C 0.052 3.948 22 N -0.405 5.405 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.036 0.964 27 H 0.026 0.974 28 H 0.386 0.614 29 H 0.254 0.746 30 H 0.415 0.585 31 H 0.182 0.818 32 H 0.174 0.826 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.183 -2.561 -11.631 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.026 3.974 3 H 0.108 0.892 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.373 4.373 7 H 0.090 0.910 8 C -0.209 4.209 9 N -0.579 5.579 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 N -0.336 5.336 15 C 0.357 3.643 16 O -0.415 6.415 17 C -0.103 4.103 18 C -0.055 4.055 19 N -0.157 5.157 20 C -0.096 4.096 21 C -0.111 4.111 22 N -0.122 5.122 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.220 0.780 29 H 0.064 0.936 30 H 0.251 0.749 31 H 0.199 0.801 32 H 0.191 0.809 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -9.373 -1.769 -11.439 14.894 hybrid contribution 1.053 -0.933 0.503 1.494 sum -8.319 -2.702 -10.937 14.004 Atomic orbital electron populations 1.22103 0.95193 1.02030 1.02289 1.21368 0.93575 0.98115 0.84355 0.89211 1.20990 0.86932 0.97059 0.93405 1.42363 0.99693 1.70310 1.25290 1.19261 0.89427 1.29470 0.99129 0.91032 1.24758 0.96464 1.01566 0.98065 1.69683 1.07132 1.50831 1.30210 0.86112 0.79902 0.78728 0.81387 1.20529 1.21897 1.21881 1.45870 1.64076 1.15099 1.08510 1.17607 0.78162 0.85959 0.82592 1.90770 1.51237 1.14757 1.84732 1.22312 1.00174 0.91628 0.96175 1.23817 0.92305 1.01821 0.87538 1.68606 1.08200 1.09385 1.29481 1.24073 0.94927 0.91197 0.99367 1.23879 0.96275 1.02010 0.88891 1.68406 1.05502 1.08261 1.30070 0.92378 0.92461 0.91392 0.94652 0.95660 0.78030 0.93586 0.74851 0.80100 0.80854 0.80616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 2 C 0.13 2.22 2.73 -67.93 -0.19 2.03 16 3 H 0.09 1.69 7.58 -51.93 -0.39 1.29 16 4 C 0.14 2.82 5.82 -4.04 -0.02 2.80 16 5 N -0.73 -18.36 5.43 -59.91 -0.33 -18.69 16 6 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 7 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 8 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 9 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 10 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 N -0.69 -11.74 4.51 -54.65 -0.25 -11.99 16 15 C 0.57 9.94 7.78 -12.19 -0.09 9.84 16 16 O -0.54 -10.23 16.01 5.35 0.09 -10.15 16 17 C 0.04 0.59 6.75 -82.84 -0.56 0.03 16 18 C 0.10 1.44 10.77 -16.99 -0.18 1.26 16 19 N -0.44 -5.57 10.49 -12.71 -0.13 -5.70 16 20 C 0.07 0.65 11.23 -17.24 -0.19 0.45 16 21 C 0.05 0.56 11.22 -17.39 -0.20 0.36 16 22 N -0.40 -5.86 9.71 -9.61 -0.09 -5.96 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.39 10.42 7.33 -40.82 -0.30 10.12 16 29 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.41 7.18 7.95 -40.82 -0.32 6.86 16 31 H 0.18 2.28 7.65 -52.49 -0.40 1.87 16 32 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.18 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 294.85 15.07 4.44 4.44 Total: -1.00 -33.05 294.85 -5.82 -38.87 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -3.92 Total: 11.72 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -1.33 Total: 7.67 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -0.07 Total: -69.89 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.05 -5.82 -38.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732986674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.618 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds