Wall clock time and date at job start Thu Apr 9 2020 12:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46500 * 109.47170 * 175.00049 * 4 2 1 6 6 C 1.36937 * 120.00196 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99920 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99841 * 179.97438 * 6 5 4 9 9 N 1.31612 * 120.00394 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99743 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47328 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47338 * 120.00126 * 10 8 6 13 13 H 1.48502 * 109.47016 * 240.00216 * 10 8 6 14 14 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 15 15 C 1.34769 * 119.99686 * 84.99974 * 14 2 1 16 16 O 1.21514 * 120.00586 * 0.02562 * 15 14 2 17 17 C 1.48159 * 119.99624 * 180.02562 * 15 14 2 18 18 C 1.39438 * 120.09252 * 179.97438 * 17 15 14 19 19 N 1.32089 * 119.87068 * 180.02562 * 18 17 15 20 20 C 1.32140 * 120.06777 * 0.02562 * 19 18 17 21 21 C 1.38726 * 120.19684 * 0.02562 * 20 19 18 22 22 N 1.31799 * 120.12647 * 359.72150 * 21 20 19 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 27 27 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 28 28 H 0.97004 * 120.00188 * 0.02562 * 5 4 2 29 29 H 0.97000 * 120.00161 * 179.97438 * 9 8 6 30 30 H 0.97000 * 119.99634 * 265.00306 * 14 2 1 31 31 H 1.07992 * 120.07022 * 359.97438 * 18 17 15 32 32 H 1.08007 * 119.89957 * 180.02562 * 20 19 18 33 33 H 1.08004 * 119.93581 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1838 -1.4379 2.2074 7 1 3.6467 -1.8430 3.0522 8 6 5.5672 -1.5380 2.1515 9 7 6.2217 -1.0447 1.1217 10 14 6.4999 -2.3728 3.5381 11 1 5.5396 -2.8382 4.5709 12 1 7.2508 -3.5354 3.0000 13 1 7.4509 -1.4079 4.1462 14 7 2.0184 -0.6906 -1.1962 15 6 2.1472 -0.0183 -2.3570 16 8 1.8586 1.1608 -2.4116 17 6 2.6406 -0.7169 -3.5669 18 6 2.7740 -0.0233 -4.7691 19 7 3.2138 -0.6506 -5.8452 20 6 3.5263 -1.9330 -5.7826 21 6 3.3936 -2.6260 -4.5882 22 7 2.9602 -2.0065 -3.5086 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.7516 -0.1583 2.1369 27 1 1.6053 -1.7198 1.2952 28 1 3.9825 -0.4622 0.4320 29 1 7.1884 -1.1143 1.0829 30 1 2.2491 -1.6318 -1.1525 31 1 2.5175 1.0245 -4.8207 32 1 3.8860 -2.4431 -6.6640 33 1 3.6506 -3.6740 -4.5417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732986674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:54 Heat of formation + Delta-G solvation = -2.006445 kcal Electronic energy + Delta-G solvation = -17795.000484 eV Core-core repulsion = 14855.237215 eV Total energy + Delta-G solvation = -2939.763269 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.27556 -40.54513 -37.75738 -35.69248 -35.31248 -33.22372 -32.61268 -31.35356 -27.45266 -26.58373 -25.56974 -24.52919 -22.78518 -21.58468 -19.54730 -19.03955 -18.54097 -17.76360 -17.17177 -16.74832 -16.51672 -16.04531 -15.46651 -15.35924 -15.11167 -15.02218 -14.04407 -13.84613 -13.65975 -13.56080 -13.10594 -12.82165 -12.78366 -12.66034 -12.39997 -12.11159 -11.91802 -11.71580 -11.47943 -10.98704 -10.55281 -10.19836 -10.09958 -9.02356 -7.94851 -5.24851 -0.67292 -0.01258 1.47855 1.48729 1.58857 1.62521 1.99242 2.55691 2.72770 2.93671 3.18169 3.38711 3.40134 3.70461 3.85192 4.01869 4.10300 4.28380 4.31822 4.49013 4.51725 4.78772 4.84651 4.92454 5.08415 5.25801 5.28955 5.47878 5.51153 6.05176 6.25271 6.37401 6.64540 7.04028 7.32401 8.05733 8.29245 9.28490 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.006093 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.422392 B = 4594.455489 C = 5580.889702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.136 3.864 3 H 0.067 0.933 4 C 0.145 3.855 5 N -0.745 5.745 6 C -0.243 4.243 7 H 0.081 0.919 8 C -0.076 4.076 9 N -0.970 5.970 10 Si 0.975 3.025 11 H -0.263 1.263 12 H -0.294 1.294 13 H -0.297 1.297 14 N -0.686 5.686 15 C 0.570 3.430 16 O -0.565 6.565 17 C 0.010 3.990 18 C 0.100 3.900 19 N -0.457 5.457 20 C 0.086 3.914 21 C 0.054 3.946 22 N -0.431 5.431 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.372 0.628 29 H 0.249 0.751 30 H 0.413 0.587 31 H 0.182 0.818 32 H 0.223 0.777 33 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.672 -4.271 -12.018 16.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.031 3.969 3 H 0.085 0.915 4 C 0.018 3.982 5 N -0.388 5.388 6 C -0.374 4.374 7 H 0.099 0.901 8 C -0.268 4.268 9 N -0.621 5.621 10 Si 0.804 3.196 11 H -0.187 1.187 12 H -0.221 1.221 13 H -0.224 1.224 14 N -0.336 5.336 15 C 0.355 3.645 16 O -0.445 6.445 17 C -0.129 4.129 18 C -0.058 4.058 19 N -0.171 5.171 20 C -0.076 4.076 21 C -0.110 4.110 22 N -0.149 5.149 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.105 0.895 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.204 0.796 29 H 0.058 0.942 30 H 0.250 0.750 31 H 0.199 0.801 32 H 0.240 0.760 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.929 -3.460 -11.788 15.796 hybrid contribution 1.186 -0.484 0.524 1.384 sum -8.743 -3.944 -11.264 14.794 Atomic orbital electron populations 1.22011 0.92159 1.03202 1.03050 1.21277 0.95760 0.96373 0.83475 0.91513 1.21156 0.84005 0.98087 0.94943 1.42556 1.01889 1.70010 1.24306 1.19698 0.89893 1.28271 0.99560 0.90086 1.25590 0.97573 1.03080 1.00569 1.69853 1.06894 1.52926 1.32385 0.85045 0.78452 0.77255 0.78801 1.18740 1.22076 1.22436 1.45867 1.64193 1.14926 1.08590 1.17966 0.77560 0.85777 0.83237 1.90734 1.52548 1.15847 1.85327 1.21981 1.02801 0.92468 0.95700 1.23811 0.92441 1.02007 0.87507 1.68695 1.08820 1.10836 1.28778 1.24902 0.91956 0.90105 1.00637 1.24622 0.94646 1.03561 0.88159 1.68344 1.06488 1.08006 1.32083 0.92692 0.91031 0.89536 0.93771 0.94240 0.79609 0.94222 0.75009 0.80126 0.76036 0.76848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.48 71.98 0.68 -3.11 16 2 C 0.14 4.63 2.73 44.99 0.12 4.75 16 3 H 0.07 2.59 7.58 -2.39 -0.02 2.57 16 4 C 0.14 5.57 5.82 86.38 0.50 6.07 16 5 N -0.74 -37.59 5.43 -343.45 -1.87 -39.46 16 6 C -0.24 -13.37 9.99 84.03 0.84 -12.53 16 7 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 8 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 9 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 10 Si 0.98 45.98 29.55 68.60 2.03 48.00 16 11 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 12 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 13 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 14 N -0.69 -23.98 4.51 -445.11 -2.01 -25.99 16 15 C 0.57 20.45 7.78 86.88 0.68 21.12 16 16 O -0.57 -22.46 16.01 -3.76 -0.06 -22.52 16 17 C 0.01 0.30 6.75 41.89 0.28 0.58 16 18 C 0.10 2.78 10.77 84.94 0.92 3.69 16 19 N -0.46 -10.81 10.49 -194.12 -2.04 -12.84 16 20 C 0.09 1.43 11.23 84.76 0.95 2.38 16 21 C 0.05 1.03 11.22 84.81 0.95 1.98 16 22 N -0.43 -12.23 9.71 -184.33 -1.79 -14.02 16 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.37 20.64 7.33 -92.71 -0.68 19.96 16 29 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 30 H 0.41 14.54 7.95 -92.71 -0.74 13.80 16 31 H 0.18 4.77 7.65 -2.91 -0.02 4.75 16 32 H 0.22 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.22 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -72.32 294.85 0.67 -71.65 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: -0.27 Total: 33.82 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 6.39 Total: 21.05 kcal Atomic # 7 Polarization: -144.58 SS G_CDS: -7.42 Total: -152.00 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.06 Total: -22.52 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -72.32 0.67 -71.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732986674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.644 kcal (2) G-P(sol) polarization free energy of solvation -72.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds