Wall clock time and date at job start Thu Apr 9 2020 12:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46739 * 2 1 4 4 C 1.52999 * 109.46933 * 119.99441 * 2 1 3 5 5 N 1.46501 * 109.47132 * 174.99829 * 4 2 1 6 6 C 1.36930 * 120.00361 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99887 * 0.02562 * 6 5 4 8 8 C 1.38816 * 120.00286 * 179.97438 * 6 5 4 9 9 N 1.31614 * 119.99826 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99938 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47378 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46988 * 120.00360 * 10 8 6 13 13 H 1.48503 * 109.46759 * 240.00233 * 10 8 6 14 14 N 1.46496 * 109.46840 * 239.99470 * 2 1 3 15 15 C 1.34773 * 120.00030 * 85.00366 * 14 2 1 16 16 O 1.21558 * 119.99847 * 359.97438 * 15 14 2 17 17 C 1.47835 * 120.00282 * 179.97438 * 15 14 2 18 18 C 1.39948 * 120.93699 * 359.94958 * 17 15 14 19 19 N 1.32144 * 118.92292 * 180.02562 * 18 17 15 20 20 C 1.31874 * 120.96683 * 0.02562 * 19 18 17 21 21 N 1.31870 * 122.09686 * 0.02562 * 20 19 18 22 22 C 1.32145 * 120.96699 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.47005 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47192 * 300.00253 * 1 2 3 25 25 H 1.08996 * 109.47409 * 60.00173 * 1 2 3 26 26 H 1.08999 * 109.47362 * 295.00223 * 4 2 1 27 27 H 1.09002 * 109.47067 * 55.00544 * 4 2 1 28 28 H 0.97008 * 119.99647 * 0.02562 * 5 4 2 29 29 H 0.96998 * 120.00214 * 179.97438 * 9 8 6 30 30 H 0.96998 * 120.00179 * 264.99824 * 14 2 1 31 31 H 1.07995 * 120.53671 * 0.05244 * 18 17 15 32 32 H 1.07999 * 118.95094 * 179.97438 * 20 19 18 33 33 H 1.07994 * 120.53751 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5001 -0.8263 1.1907 6 6 4.1839 -1.4377 2.2073 7 1 3.6468 -1.8428 3.0523 8 6 5.5673 -1.5379 2.1515 9 7 6.2217 -1.0447 1.1216 10 14 6.5000 -2.3726 3.5381 11 1 5.5396 -2.8389 4.5702 12 1 7.2509 -3.5353 2.9999 13 1 7.4510 -1.4076 4.1460 14 7 2.0183 -0.6907 -1.1961 15 6 2.1471 -0.0185 -2.3571 16 8 1.8576 1.1609 -2.4118 17 6 2.6403 -0.7153 -3.5640 18 6 2.9802 -2.0723 -3.5229 19 7 3.4174 -2.6552 -4.6252 20 6 3.5354 -1.9775 -5.7503 21 7 3.2275 -0.6979 -5.8331 22 6 2.7826 -0.0361 -4.7794 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.7516 -0.1582 2.1370 27 1 1.6054 -1.7197 1.2953 28 1 3.9825 -0.4621 0.4319 29 1 7.1884 -1.1143 1.0827 30 1 2.2490 -1.6318 -1.1525 31 1 2.8862 -2.6339 -2.6053 32 1 3.8965 -2.4864 -6.6318 33 1 2.5320 1.0117 -4.8551 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732994186.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:56 Heat of formation + Delta-G solvation = 22.769405 kcal Electronic energy + Delta-G solvation = -17802.930729 eV Core-core repulsion = 14864.241821 eV Total energy + Delta-G solvation = -2938.688908 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.23541 -39.34758 -36.29632 -34.08984 -33.62907 -32.65405 -31.06881 -29.88188 -25.83642 -25.29190 -24.61634 -22.76065 -21.39527 -20.37831 -18.21115 -17.71824 -17.42288 -16.87971 -15.81965 -15.26530 -14.85468 -14.50836 -14.17302 -13.80082 -13.76485 -13.54147 -13.32075 -12.46837 -12.30317 -12.22918 -11.71857 -11.69737 -11.01451 -10.97747 -10.88855 -10.54322 -10.08468 -9.84665 -9.83020 -9.80612 -9.43786 -8.99468 -8.86555 -7.03449 -5.84306 -3.14706 0.35112 0.90442 2.89451 3.20949 3.38810 3.44543 3.46892 3.74671 3.92243 4.01509 4.34998 4.51839 4.67017 4.86190 5.15184 5.22089 5.40075 5.47757 5.56571 5.61521 5.92140 6.00637 6.10036 6.12941 6.31042 6.36664 6.59600 6.70526 6.79638 7.62050 7.63119 7.84444 8.27419 8.33240 9.45288 9.99992 10.35067 11.37901 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.019726 B = 0.006096 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.070251 B = 4592.049860 C = 5587.360967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.133 3.867 3 H 0.090 0.910 4 C 0.143 3.857 5 N -0.733 5.733 6 C -0.244 4.244 7 H 0.072 0.928 8 C -0.011 4.011 9 N -0.930 5.930 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 N -0.702 5.702 15 C 0.569 3.431 16 O -0.538 6.538 17 C -0.234 4.234 18 C 0.189 3.811 19 N -0.521 5.521 20 C 0.308 3.692 21 N -0.525 5.525 22 C 0.205 3.795 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.036 0.964 27 H 0.026 0.974 28 H 0.385 0.615 29 H 0.255 0.745 30 H 0.403 0.597 31 H 0.174 0.826 32 H 0.200 0.800 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.867 -1.432 -9.876 14.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 H 0.108 0.892 4 C 0.015 3.985 5 N -0.378 5.378 6 C -0.375 4.375 7 H 0.090 0.910 8 C -0.208 4.208 9 N -0.578 5.578 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 N -0.352 5.352 15 C 0.354 3.646 16 O -0.416 6.416 17 C -0.242 4.242 18 C 0.022 3.978 19 N -0.234 5.234 20 C 0.021 3.979 21 N -0.239 5.239 22 C 0.038 3.962 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.219 0.781 29 H 0.065 0.935 30 H 0.239 0.761 31 H 0.191 0.809 32 H 0.217 0.783 33 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.704 -1.157 -10.546 14.378 hybrid contribution 0.716 -0.416 1.334 1.570 sum -8.988 -1.572 -9.212 12.966 Atomic orbital electron populations 1.22106 0.95199 1.02011 1.02346 1.21330 0.93526 0.98122 0.84127 0.89168 1.21006 0.86905 0.97063 0.93509 1.42371 0.99694 1.70372 1.25322 1.19254 0.89425 1.29610 0.99253 0.91006 1.24762 0.96465 1.01451 0.98078 1.69669 1.07263 1.50696 1.30210 0.86114 0.79908 0.78741 0.81367 1.20512 1.21833 1.21827 1.45902 1.65784 1.14376 1.09163 1.17718 0.77830 0.86361 0.82695 1.90768 1.50775 1.15100 1.84974 1.21883 1.07442 0.97185 0.97653 1.23566 0.86469 0.90856 0.96924 1.68478 1.14789 1.40215 0.99936 1.25236 0.89678 0.87300 0.95649 1.68551 1.13300 1.10246 1.31767 1.23486 0.86151 1.00550 0.85988 0.92474 0.91408 0.92348 0.94617 0.95641 0.78067 0.93484 0.76124 0.80895 0.78342 0.80238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.48 37.16 0.35 -1.64 16 2 C 0.13 2.09 2.73 -67.93 -0.19 1.91 16 3 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 4 C 0.14 2.63 5.82 -4.04 -0.02 2.60 16 5 N -0.73 -17.47 5.43 -59.91 -0.33 -17.79 16 6 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 7 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 8 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 9 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 10 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 14 N -0.70 -10.52 4.48 -54.75 -0.25 -10.76 16 15 C 0.57 8.90 7.75 -12.34 -0.10 8.81 16 16 O -0.54 -9.78 16.11 5.31 0.09 -9.69 16 17 C -0.23 -3.22 5.91 -104.69 -0.62 -3.83 16 18 C 0.19 2.44 10.81 -16.78 -0.18 2.26 16 19 N -0.52 -6.75 10.42 -14.25 -0.15 -6.90 16 20 C 0.31 3.54 12.27 -92.02 -1.13 2.41 16 21 N -0.53 -6.63 10.42 -14.24 -0.15 -6.78 16 22 C 0.21 2.67 10.88 -16.78 -0.18 2.49 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.39 9.86 7.33 -40.82 -0.30 9.56 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.40 5.59 6.74 -40.82 -0.28 5.31 16 31 H 0.17 1.94 6.54 -52.49 -0.34 1.60 16 32 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.18 2.12 7.74 -52.49 -0.41 1.71 16 LS Contribution 292.78 15.07 4.41 4.41 Total: -1.00 -32.14 292.78 -6.78 -38.92 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -3.80 Total: 10.64 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -2.31 Total: 7.89 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -0.14 Total: -69.05 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.14 -6.78 -38.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732994186.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.688 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds