Wall clock time and date at job start Thu Apr 9 2020 12:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47390 * 2 1 4 4 C 1.53000 * 109.47240 * 239.99681 * 2 1 3 5 5 N 1.46504 * 109.46966 * 185.00315 * 4 2 1 6 6 C 1.34780 * 119.99831 * 180.02562 * 5 4 2 7 7 O 1.21517 * 120.00086 * 359.97438 * 6 5 4 8 8 C 1.48154 * 119.99863 * 179.97438 * 6 5 4 9 9 C 1.39434 * 120.09522 * 179.97438 * 8 6 5 10 10 N 1.32083 * 119.87055 * 179.76338 * 9 8 6 11 11 C 1.32130 * 120.07345 * 0.51460 * 10 9 8 12 12 C 1.38732 * 120.19355 * 359.48336 * 11 10 9 13 13 N 1.31798 * 120.12697 * 0.25503 * 12 11 10 14 14 N 1.46501 * 109.46894 * 119.99791 * 2 1 3 15 15 C 1.36937 * 119.99619 * 274.99991 * 14 2 1 16 16 H 1.07999 * 120.00188 * 359.97438 * 15 14 2 17 17 C 1.38816 * 119.99807 * 180.02562 * 15 14 2 18 18 N 1.31620 * 120.00003 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00001 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47359 * 59.99504 * 19 17 15 21 21 H 1.48505 * 109.47402 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47212 * 299.99662 * 19 17 15 23 23 H 1.09004 * 109.46942 * 60.00476 * 1 2 3 24 24 H 1.08999 * 109.47390 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47323 * 300.00677 * 1 2 3 26 26 H 1.09000 * 109.47330 * 65.00577 * 4 2 1 27 27 H 1.09000 * 109.47135 * 305.00037 * 4 2 1 28 28 H 0.96994 * 120.00168 * 359.97438 * 5 4 2 29 29 H 1.08004 * 120.06363 * 0.02562 * 9 8 6 30 30 H 1.08002 * 119.90689 * 179.76717 * 11 10 9 31 31 H 1.08001 * 119.93472 * 180.28389 * 12 11 10 32 32 H 0.96998 * 120.00313 * 95.00435 * 14 2 1 33 33 H 0.97001 * 119.99893 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1904 6 6 4.1732 -1.4284 -2.1910 7 8 3.5689 -1.8843 -3.1416 8 6 5.6497 -1.5343 -2.1318 9 6 6.3480 -2.1571 -3.1656 10 7 7.6648 -2.2449 -3.1105 11 6 8.3184 -1.7525 -2.0731 12 6 7.6265 -1.1322 -1.0430 13 7 6.3130 -1.0358 -1.0923 14 7 2.0183 -0.6906 1.1962 15 6 2.1490 -0.0073 2.3757 16 1 1.8925 1.0407 2.4240 17 6 2.6122 -0.6615 3.5091 18 7 2.9252 -1.9386 3.4501 19 14 2.7898 0.2703 5.1183 20 1 1.4671 0.8062 5.5287 21 1 3.2989 -0.6480 6.1685 22 1 3.7443 1.3934 4.9372 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.7518 -0.1584 -2.1370 27 1 1.6054 -1.7199 -1.2951 28 1 3.9824 -0.4623 -0.4318 29 1 5.8136 -2.5632 -4.0117 30 1 9.3948 -1.8291 -2.0291 31 1 8.1654 -0.7272 -0.1991 32 1 2.2490 -1.6317 1.1527 33 1 3.2485 -2.3958 4.2422 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752856588.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:59 Heat of formation + Delta-G solvation = -1.349065 kcal Electronic energy + Delta-G solvation = -17714.903931 eV Core-core repulsion = 14775.169167 eV Total energy + Delta-G solvation = -2939.734763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.26754 -40.41334 -37.94041 -35.67611 -35.05176 -33.61196 -32.69070 -30.55920 -27.82962 -26.12755 -25.67784 -25.16573 -21.91515 -21.73269 -19.53083 -19.00790 -18.61188 -17.76192 -17.00497 -16.85014 -16.50552 -16.06854 -15.77710 -15.28562 -15.15533 -14.74024 -13.95294 -13.82273 -13.65838 -13.44235 -13.07562 -12.76818 -12.73180 -12.50076 -12.40423 -12.22424 -11.72678 -11.65931 -11.50181 -10.94890 -10.56118 -10.18942 -10.07065 -9.01485 -7.89893 -5.19140 -0.67708 -0.01536 1.50536 1.52347 1.58199 1.61846 2.02560 2.58963 2.72481 2.95272 3.18146 3.38721 3.44377 3.77385 3.89321 3.96585 4.09953 4.31547 4.38690 4.52003 4.62753 4.72672 4.83573 5.07306 5.24762 5.26162 5.33944 5.56514 5.57398 6.05867 6.30037 6.38482 6.65099 7.02640 7.37384 8.09498 8.33952 9.32725 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.019734 B = 0.006208 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.554927 B = 4509.040047 C = 5661.645858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.158 3.842 3 H 0.059 0.941 4 C 0.119 3.881 5 N -0.691 5.691 6 C 0.567 3.433 7 O -0.566 6.566 8 C 0.008 3.992 9 C 0.103 3.897 10 N -0.456 5.456 11 C 0.088 3.912 12 C 0.052 3.948 13 N -0.434 5.434 14 N -0.732 5.732 15 C -0.235 4.235 16 H 0.078 0.922 17 C -0.071 4.071 18 N -0.967 5.967 19 Si 0.969 3.031 20 H -0.282 1.282 21 H -0.300 1.300 22 H -0.277 1.277 23 H 0.075 0.925 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.416 0.584 29 H 0.185 0.815 30 H 0.223 0.777 31 H 0.211 0.789 32 H 0.372 0.628 33 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.826 3.390 -10.846 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 H 0.077 0.923 4 C -0.005 4.005 5 N -0.341 5.341 6 C 0.351 3.649 7 O -0.446 6.446 8 C -0.131 4.131 9 C -0.055 4.055 10 N -0.170 5.170 11 C -0.074 4.074 12 C -0.111 4.111 13 N -0.152 5.152 14 N -0.373 5.373 15 C -0.367 4.367 16 H 0.096 0.904 17 C -0.264 4.264 18 N -0.618 5.618 19 Si 0.798 3.202 20 H -0.208 1.208 21 H -0.227 1.227 22 H -0.203 1.203 23 H 0.094 0.906 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.253 0.747 29 H 0.202 0.798 30 H 0.240 0.760 31 H 0.227 0.773 32 H 0.203 0.797 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.286 3.234 -11.418 14.473 hybrid contribution 0.174 -0.025 1.541 1.551 sum 8.460 3.209 -9.877 13.395 Atomic orbital electron populations 1.22221 0.96374 1.01289 1.01492 1.20705 0.93850 0.95581 0.84939 0.92346 1.21751 0.78797 1.01045 0.98925 1.45909 1.08485 1.56764 1.22913 1.17976 0.85995 0.78302 0.82609 1.90732 1.69320 1.50035 1.34512 1.22005 0.95142 1.01500 0.94432 1.23839 0.90820 0.92966 0.97851 1.68702 1.07759 1.15583 1.24982 1.24878 1.04176 0.90072 0.88263 1.24588 0.89270 0.96349 1.00918 1.68386 1.11442 1.13493 1.21889 1.42588 1.78376 1.10236 1.06086 1.19538 1.34897 0.94177 0.88103 0.90414 1.25472 1.02987 0.96713 1.01185 1.69822 1.52527 1.10194 1.29263 0.85286 0.77810 0.77332 0.79724 1.20795 1.22704 1.20289 0.90578 0.93771 0.93618 0.89237 0.92366 0.74701 0.79785 0.76030 0.77274 0.79661 0.94291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 9.49 71.98 0.68 -4.36 16 2 C 0.16 5.82 3.05 44.99 0.14 5.96 16 3 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 4 C 0.12 4.02 5.23 86.38 0.45 4.47 16 5 N -0.69 -24.66 5.38 -465.66 -2.50 -27.17 16 6 C 0.57 19.95 7.81 86.88 0.68 20.63 16 7 O -0.57 -21.62 16.35 -3.77 -0.06 -21.68 16 8 C 0.01 0.26 6.75 41.89 0.28 0.54 16 9 C 0.10 2.74 10.77 84.94 0.92 3.65 16 10 N -0.46 -10.39 10.49 -194.12 -2.04 -12.43 16 11 C 0.09 1.45 11.23 84.77 0.95 2.40 16 12 C 0.05 1.04 11.22 84.82 0.95 1.99 16 13 N -0.43 -12.70 9.71 -184.33 -1.79 -14.49 16 14 N -0.73 -34.83 4.56 -322.94 -1.47 -36.30 16 15 C -0.24 -12.39 9.93 84.03 0.83 -11.56 16 16 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 17 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 18 N -0.97 -57.88 13.06 21.65 0.28 -57.60 16 19 Si 0.97 44.90 29.55 68.60 2.03 46.93 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 21 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 23 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 27 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 28 H 0.42 15.89 7.49 -92.71 -0.69 15.20 16 29 H 0.19 4.53 7.65 -2.91 -0.02 4.51 16 30 H 0.22 1.40 8.06 -2.91 -0.02 1.37 16 31 H 0.21 2.57 8.06 -2.91 -0.02 2.54 16 32 H 0.37 19.61 7.80 -92.71 -0.72 18.88 16 33 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -68.08 295.40 0.52 -67.55 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -0.28 Total: 34.94 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 6.35 Total: 20.25 kcal Atomic # 7 Polarization: -140.47 SS G_CDS: -7.52 Total: -147.99 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.06 Total: -21.68 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -68.08 0.52 -67.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752856588.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.204 kcal (2) G-P(sol) polarization free energy of solvation -68.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds