Wall clock time and date at job start Thu Apr 9 2020 12:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46506 * 120.00094 * 2 1 4 4 C 1.52996 * 109.47114 * 269.72694 * 3 2 1 5 5 N 1.46496 * 109.47115 * 180.02562 * 4 3 2 6 6 C 1.36940 * 120.00279 * 179.97438 * 5 4 3 7 7 H 1.07994 * 119.99571 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00124 * 179.97438 * 6 5 4 9 9 N 1.31614 * 119.99821 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99794 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47185 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.46751 * 119.99990 * 10 8 6 13 13 H 1.48497 * 109.47095 * 239.99815 * 10 8 6 14 14 C 1.34776 * 119.99721 * 179.72582 * 2 1 3 15 15 O 1.21483 * 119.99678 * 177.24416 * 14 2 1 16 16 C 1.48452 * 120.00184 * 357.23839 * 14 2 1 17 17 C 1.39536 * 120.54817 * 186.71564 * 16 14 2 18 18 C 1.38763 * 118.26120 * 179.97438 * 17 16 14 19 19 N 1.32206 * 119.14862 * 359.97438 * 18 17 16 20 20 C 1.31879 * 121.03416 * 0.02562 * 19 18 17 21 21 N 1.31582 * 121.91733 * 359.72992 * 20 19 18 22 22 H 1.08996 * 109.46799 * 96.02951 * 1 2 3 23 23 H 1.09000 * 109.46889 * 216.03221 * 1 2 3 24 24 H 1.09001 * 109.46467 * 336.03105 * 1 2 3 25 25 H 1.09003 * 109.46855 * 29.72587 * 3 2 1 26 26 H 1.09001 * 109.46797 * 149.72120 * 3 2 1 27 27 H 1.08998 * 109.46743 * 299.99557 * 4 3 2 28 28 H 1.08992 * 109.47200 * 59.99469 * 4 3 2 29 29 H 0.97005 * 119.99622 * 359.97438 * 5 4 3 30 30 H 0.97007 * 120.00066 * 180.02562 * 9 8 6 31 31 H 1.07998 * 120.87133 * 0.02562 * 17 16 14 32 32 H 1.08006 * 120.42397 * 180.02562 * 18 17 16 33 33 H 1.08005 * 119.03948 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4585 1.7070 -1.4424 5 7 3.1916 2.9754 -1.4424 6 6 3.5394 3.5652 -2.6283 7 1 3.2737 3.0951 -3.5636 8 6 4.2335 4.7673 -2.6283 9 7 4.5578 5.3399 -1.4885 10 14 4.7074 5.5723 -4.2460 11 1 4.2290 4.7342 -5.3747 12 1 4.0846 6.9176 -4.3305 13 1 6.1846 5.7052 -4.3188 14 6 2.1389 -1.1672 0.0056 15 8 3.3526 -1.1681 -0.0450 16 6 1.3979 -2.4518 0.0737 17 6 2.0827 -3.6586 0.2207 18 6 1.3427 -4.8310 0.2795 19 7 0.0249 -4.7656 0.1956 20 6 -0.5909 -3.6077 0.0570 21 7 0.0693 -2.4709 0.0013 22 1 -0.3633 -0.1079 -1.0220 23 1 -0.3633 -0.8311 0.6045 24 1 -0.3632 0.9391 0.4175 25 1 1.6064 2.0296 0.5096 26 1 3.1478 1.1396 0.5182 27 1 3.0498 0.9461 -1.9519 28 1 1.5083 1.8360 -1.9605 29 1 3.4306 3.3974 -0.6023 30 1 5.0425 6.1802 -1.4884 31 1 3.1604 -3.6796 0.2877 32 1 1.8369 -5.7846 0.3933 33 1 -1.6689 -3.5917 -0.0079 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753244271.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:26:05 Heat of formation + Delta-G solvation = 51.703004 kcal Electronic energy + Delta-G solvation = -17532.872945 eV Core-core repulsion = 14595.438692 eV Total energy + Delta-G solvation = -2937.434253 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.53250 -39.46143 -36.06919 -34.68697 -33.85185 -32.39363 -31.31705 -28.36397 -26.84395 -25.33088 -24.70912 -23.50165 -21.67664 -20.21682 -18.08729 -17.65887 -17.11332 -16.16419 -15.84230 -15.65465 -15.45996 -14.81925 -14.36780 -14.12231 -13.79545 -13.40706 -13.26645 -12.86263 -12.76910 -12.32677 -11.34587 -11.17437 -11.07983 -10.92851 -10.86990 -10.67226 -10.40183 -10.07895 -10.05347 -9.73653 -9.31482 -8.86482 -8.51838 -6.92029 -5.74925 -3.04146 0.22539 0.56648 2.65535 2.83196 3.45433 3.50848 3.52966 3.53397 3.63876 3.77927 4.17678 4.51827 4.63029 4.69288 5.18341 5.20184 5.33562 5.51258 5.62538 5.65050 5.79776 5.89264 6.02758 6.09045 6.18295 6.42995 6.57284 6.73828 6.89303 7.35938 7.59192 7.72574 8.05663 8.43504 9.54615 10.10286 10.45671 11.48098 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.048197 B = 0.003938 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.810155 B = 7108.497482 C = 7215.725442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.585 5.585 3 C 0.105 3.895 4 C 0.143 3.857 5 N -0.730 5.730 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.933 5.933 10 Si 0.909 3.091 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.558 3.442 15 O -0.519 6.519 16 C 0.140 3.860 17 C -0.170 4.170 18 C 0.150 3.850 19 N -0.511 5.511 20 C 0.286 3.714 21 N -0.488 5.488 22 H 0.057 0.943 23 H 0.105 0.895 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.023 0.977 28 H 0.020 0.980 29 H 0.384 0.616 30 H 0.255 0.745 31 H 0.162 0.838 32 H 0.176 0.824 33 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.067 -19.084 6.218 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.316 5.316 3 C -0.017 4.017 4 C 0.014 3.986 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.343 3.657 15 O -0.393 6.393 16 C -0.008 4.008 17 C -0.193 4.193 18 C -0.017 4.017 19 N -0.225 5.225 20 C -0.001 4.001 21 N -0.205 5.205 22 H 0.076 0.924 23 H 0.123 0.877 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.179 0.821 32 H 0.193 0.807 33 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.378 -18.973 5.953 22.910 hybrid contribution 1.132 0.662 -0.631 1.455 sum -10.246 -18.311 5.322 21.647 Atomic orbital electron populations 1.22456 0.78023 1.03486 1.03138 1.47721 1.08122 1.05601 1.70148 1.21874 0.97499 0.82769 0.99553 1.20899 0.95248 0.89485 0.92925 1.42213 1.67048 1.21630 1.06638 1.19259 1.29279 1.02359 0.85974 0.91130 1.24748 1.01261 0.98023 0.96957 1.69671 1.45168 1.19470 1.23904 0.86085 0.77929 0.79120 0.82891 1.20552 1.21828 1.21794 1.17845 0.86603 0.82774 0.78484 1.90844 1.12582 1.86346 1.49567 1.21791 0.90128 0.94930 0.93914 1.23020 1.04101 0.92931 0.99223 1.23367 0.89417 0.98728 0.90214 1.68353 1.11309 1.30470 1.12406 1.25175 1.01576 0.82546 0.90829 1.68902 1.08023 1.30410 1.13200 0.92398 0.87687 0.91765 0.89941 0.89567 0.95880 0.96214 0.78244 0.93531 0.82084 0.80663 0.78139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 9.45 59.85 0.57 1.40 16 2 N -0.58 -8.84 2.87 -182.46 -0.52 -9.36 16 3 C 0.11 1.85 5.54 -4.04 -0.02 1.83 16 4 C 0.14 3.10 6.58 -4.05 -0.03 3.08 16 5 N -0.73 -19.36 5.60 -59.92 -0.34 -19.70 16 6 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 7 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.76 13.06 55.49 0.72 -28.03 16 10 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 14 C 0.56 8.77 7.67 -12.05 -0.09 8.68 16 15 O -0.52 -9.84 16.05 5.38 0.09 -9.75 16 16 C 0.14 1.73 6.66 -82.64 -0.55 1.18 16 17 C -0.17 -1.69 9.72 -38.90 -0.38 -2.07 16 18 C 0.15 1.19 11.31 -17.20 -0.19 0.99 16 19 N -0.51 -4.64 10.42 -14.59 -0.15 -4.79 16 20 C 0.29 2.45 12.27 -92.26 -1.13 1.32 16 21 N -0.49 -5.17 6.20 -11.14 -0.07 -5.23 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.11 1.10 5.17 -52.27 -0.27 0.83 16 24 H 0.06 0.67 7.82 -51.93 -0.41 0.27 16 25 H 0.08 1.32 7.85 -51.93 -0.41 0.91 16 26 H 0.09 1.63 7.46 -51.93 -0.39 1.25 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.38 10.49 7.67 -40.82 -0.31 10.18 16 30 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.16 1.49 7.75 -52.49 -0.41 1.08 16 32 H 0.18 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.20 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 290.18 15.07 4.37 4.37 Total: -1.00 -34.65 290.18 -6.85 -41.50 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -3.85 Total: 4.30 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -2.08 Total: 8.82 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: -0.36 Total: -67.12 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.65 -6.85 -41.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753244271.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.202 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds