Wall clock time and date at job start Thu Apr 9 2020 12:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46506 * 120.00094 * 2 1 4 4 C 1.52996 * 109.47114 * 269.72694 * 3 2 1 5 5 N 1.46496 * 109.47115 * 180.02562 * 4 3 2 6 6 C 1.36940 * 120.00279 * 179.97438 * 5 4 3 7 7 H 1.07994 * 119.99571 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00124 * 179.97438 * 6 5 4 9 9 N 1.31614 * 119.99821 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99794 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47185 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.46751 * 119.99990 * 10 8 6 13 13 H 1.48497 * 109.47095 * 239.99815 * 10 8 6 14 14 C 1.34776 * 119.99721 * 179.72582 * 2 1 3 15 15 O 1.21483 * 119.99678 * 177.24416 * 14 2 1 16 16 C 1.48452 * 120.00184 * 357.23839 * 14 2 1 17 17 C 1.39536 * 120.54817 * 186.71564 * 16 14 2 18 18 C 1.38763 * 118.26120 * 179.97438 * 17 16 14 19 19 N 1.32206 * 119.14862 * 359.97438 * 18 17 16 20 20 C 1.31879 * 121.03416 * 0.02562 * 19 18 17 21 21 N 1.31582 * 121.91733 * 359.72992 * 20 19 18 22 22 H 1.08996 * 109.46799 * 96.02951 * 1 2 3 23 23 H 1.09000 * 109.46889 * 216.03221 * 1 2 3 24 24 H 1.09001 * 109.46467 * 336.03105 * 1 2 3 25 25 H 1.09003 * 109.46855 * 29.72587 * 3 2 1 26 26 H 1.09001 * 109.46797 * 149.72120 * 3 2 1 27 27 H 1.08998 * 109.46743 * 299.99557 * 4 3 2 28 28 H 1.08992 * 109.47200 * 59.99469 * 4 3 2 29 29 H 0.97005 * 119.99622 * 359.97438 * 5 4 3 30 30 H 0.97007 * 120.00066 * 180.02562 * 9 8 6 31 31 H 1.07998 * 120.87133 * 0.02562 * 17 16 14 32 32 H 1.08006 * 120.42397 * 180.02562 * 18 17 16 33 33 H 1.08005 * 119.03948 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4585 1.7070 -1.4424 5 7 3.1916 2.9754 -1.4424 6 6 3.5394 3.5652 -2.6283 7 1 3.2737 3.0951 -3.5636 8 6 4.2335 4.7673 -2.6283 9 7 4.5578 5.3399 -1.4885 10 14 4.7074 5.5723 -4.2460 11 1 4.2290 4.7342 -5.3747 12 1 4.0846 6.9176 -4.3305 13 1 6.1846 5.7052 -4.3188 14 6 2.1389 -1.1672 0.0056 15 8 3.3526 -1.1681 -0.0450 16 6 1.3979 -2.4518 0.0737 17 6 2.0827 -3.6586 0.2207 18 6 1.3427 -4.8310 0.2795 19 7 0.0249 -4.7656 0.1956 20 6 -0.5909 -3.6077 0.0570 21 7 0.0693 -2.4709 0.0013 22 1 -0.3633 -0.1079 -1.0220 23 1 -0.3633 -0.8311 0.6045 24 1 -0.3632 0.9391 0.4175 25 1 1.6064 2.0296 0.5096 26 1 3.1478 1.1396 0.5182 27 1 3.0498 0.9461 -1.9519 28 1 1.5083 1.8360 -1.9605 29 1 3.4306 3.3974 -0.6023 30 1 5.0425 6.1802 -1.4884 31 1 3.1604 -3.6796 0.2877 32 1 1.8369 -5.7846 0.3933 33 1 -1.6689 -3.5917 -0.0079 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753244271.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:26:04 Heat of formation + Delta-G solvation = 27.755733 kcal Electronic energy + Delta-G solvation = -17533.911377 eV Core-core repulsion = 14595.438692 eV Total energy + Delta-G solvation = -2938.472685 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.35323 -40.61518 -37.54193 -36.27822 -34.92789 -33.35062 -33.10368 -30.04311 -27.86763 -26.70084 -25.46851 -25.11069 -23.36492 -21.38010 -19.37740 -18.87311 -18.56266 -17.35383 -16.87127 -16.69442 -16.49560 -16.37804 -15.67877 -15.31333 -15.16995 -15.02787 -14.76064 -14.38599 -13.99740 -13.24090 -13.11480 -12.91290 -12.77038 -12.38607 -12.11121 -11.95382 -11.89005 -11.77039 -11.60214 -11.01581 -10.84329 -10.16454 -9.76643 -9.09685 -8.00011 -5.31216 -0.63601 -0.10007 1.45410 1.47373 1.56377 1.58127 1.69928 2.53282 2.71903 2.78592 3.19893 3.33224 3.36580 3.71020 3.98084 4.02155 4.07270 4.18603 4.43261 4.49935 4.53698 4.60632 4.83849 4.93818 5.02347 5.08906 5.32543 5.42304 5.49356 5.72424 6.18415 6.21599 6.78945 6.94523 7.27868 7.97965 8.24596 9.23480 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.048197 B = 0.003938 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.810155 B = 7108.497482 C = 7215.725442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.586 5.586 3 C 0.119 3.881 4 C 0.150 3.850 5 N -0.742 5.742 6 C -0.253 4.253 7 H 0.072 0.928 8 C -0.071 4.071 9 N -0.967 5.967 10 Si 0.979 3.021 11 H -0.268 1.268 12 H -0.287 1.287 13 H -0.291 1.291 14 C 0.552 3.448 15 O -0.563 6.563 16 C 0.119 3.881 17 C -0.173 4.173 18 C 0.164 3.836 19 N -0.518 5.518 20 C 0.289 3.711 21 N -0.496 5.496 22 H 0.058 0.942 23 H 0.121 0.879 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.000 1.000 28 H 0.028 0.972 29 H 0.377 0.623 30 H 0.254 0.746 31 H 0.163 0.837 32 H 0.215 0.785 33 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.630 -20.525 5.872 24.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.316 5.316 3 C -0.004 4.004 4 C 0.022 3.978 5 N -0.386 5.386 6 C -0.385 4.385 7 H 0.090 0.910 8 C -0.264 4.264 9 N -0.617 5.617 10 Si 0.807 3.193 11 H -0.192 1.192 12 H -0.213 1.213 13 H -0.218 1.218 14 C 0.339 3.661 15 O -0.441 6.441 16 C -0.028 4.028 17 C -0.196 4.196 18 C -0.003 4.003 19 N -0.232 5.232 20 C 0.002 3.998 21 N -0.213 5.213 22 H 0.077 0.923 23 H 0.139 0.861 24 H 0.096 0.904 25 H 0.120 0.880 26 H 0.086 0.914 27 H 0.018 0.982 28 H 0.046 0.954 29 H 0.209 0.791 30 H 0.063 0.937 31 H 0.180 0.820 32 H 0.231 0.769 33 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -13.000 -20.441 5.603 24.864 hybrid contribution 1.557 0.986 -0.510 1.912 sum -11.444 -19.455 5.092 23.139 Atomic orbital electron populations 1.22655 0.75663 1.04973 1.03667 1.47816 1.09429 1.04582 1.69796 1.21542 0.97650 0.84610 0.96619 1.20918 0.94279 0.86987 0.95635 1.42376 1.67538 1.22946 1.05709 1.19619 1.29227 1.02739 0.86887 0.91004 1.25623 1.01501 0.98699 1.00536 1.69820 1.45972 1.19811 1.26060 0.85009 0.77244 0.78075 0.79007 1.19245 1.21327 1.21791 1.18427 0.86396 0.84010 0.77272 1.90806 1.14589 1.87210 1.51539 1.21362 0.91075 0.93771 0.96555 1.23156 1.04420 0.92885 0.99182 1.23961 0.89021 0.99333 0.87968 1.68476 1.11741 1.30562 1.12401 1.25879 1.02902 0.81735 0.89306 1.68804 1.07093 1.31606 1.13818 0.92298 0.86124 0.90419 0.87957 0.91417 0.98170 0.95411 0.79084 0.93693 0.81973 0.76876 0.74735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.56 9.45 127.77 1.21 2.77 16 2 N -0.59 -17.66 2.87 -849.48 -2.44 -20.11 16 3 C 0.12 4.24 5.54 86.38 0.48 4.72 16 4 C 0.15 6.62 6.58 86.38 0.57 7.19 16 5 N -0.74 -40.12 5.60 -343.48 -1.92 -42.04 16 6 C -0.25 -14.87 9.99 84.03 0.84 -14.03 16 7 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 8 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 9 N -0.97 -60.22 13.06 21.65 0.28 -59.93 16 10 Si 0.98 47.16 29.55 68.60 2.03 49.18 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 13 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 14 C 0.55 17.65 7.67 86.97 0.67 18.32 16 15 O -0.56 -22.31 16.05 -3.66 -0.06 -22.36 16 16 C 0.12 2.84 6.66 41.99 0.28 3.12 16 17 C -0.17 -3.25 9.72 22.71 0.22 -3.03 16 18 C 0.16 2.16 11.31 84.76 0.96 3.12 16 19 N -0.52 -7.81 10.42 -200.08 -2.09 -9.89 16 20 C 0.29 4.11 12.27 180.92 2.22 6.33 16 21 N -0.50 -9.58 6.20 -189.16 -1.17 -10.75 16 22 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.12 2.29 5.17 -3.06 -0.02 2.28 16 24 H 0.08 1.48 7.82 -2.39 -0.02 1.46 16 25 H 0.10 3.22 7.85 -2.39 -0.02 3.21 16 26 H 0.07 2.67 7.46 -2.39 -0.02 2.65 16 27 H 0.00 0.01 8.14 -2.39 -0.02 0.00 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 29 H 0.38 21.13 7.67 -92.70 -0.71 20.42 16 30 H 0.25 15.18 8.31 -92.70 -0.77 14.40 16 31 H 0.16 2.94 7.75 -2.91 -0.02 2.92 16 32 H 0.21 1.03 8.06 -2.91 -0.02 1.00 16 33 H 0.24 1.46 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -75.39 290.18 2.95 -72.44 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.42 Total: 18.69 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: 7.91 Total: 24.77 kcal Atomic # 7 Polarization: -135.38 SS G_CDS: -7.34 Total: -142.72 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.06 Total: -22.36 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -75.39 2.95 -72.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753244271.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.194 kcal (2) G-P(sol) polarization free energy of solvation -75.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds