Wall clock time and date at job start Thu Apr 9 2020 12:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34513 * 126.58045 * 2 1 4 4 O 1.34297 * 108.42459 * 179.76067 * 3 2 1 5 5 C 1.34302 * 109.47420 * 0.43821 * 4 3 2 6 6 C 1.50702 * 125.78855 * 179.82360 * 5 4 3 7 7 N 1.46898 * 109.47413 * 269.69371 * 6 5 4 8 8 C 1.46903 * 111.00133 * 190.00079 * 7 6 5 9 9 C 1.53230 * 109.33899 * 187.25239 * 8 7 6 10 10 N 1.47080 * 108.52531 * 306.16795 * 9 8 7 11 11 C 1.36931 * 120.88364 * 231.18821 * 10 9 8 12 12 H 1.07994 * 120.00368 * 26.84029 * 11 10 9 13 13 C 1.38812 * 119.99721 * 206.56279 * 11 10 9 14 14 N 1.31619 * 120.00606 * 17.47328 * 13 11 10 15 15 Si 1.86807 * 119.99780 * 197.47555 * 13 11 10 16 16 H 1.48504 * 109.46947 * 94.38387 * 15 13 11 17 17 H 1.48508 * 109.46899 * 214.38152 * 15 13 11 18 18 H 1.48495 * 109.47303 * 334.38014 * 15 13 11 19 19 C 1.47082 * 118.23403 * 51.45931 * 10 9 8 20 20 C 1.46904 * 110.99940 * 314.30418 * 7 6 5 21 21 C 1.34512 * 108.42428 * 359.56408 * 5 4 3 22 22 H 1.09008 * 109.46784 * 269.96760 * 1 2 3 23 23 H 1.08994 * 109.47154 * 29.97261 * 1 2 3 24 24 H 1.09000 * 109.46776 * 149.97975 * 1 2 3 25 25 H 1.08006 * 125.78708 * 359.97438 * 3 2 1 26 26 H 1.09004 * 109.47227 * 149.69034 * 6 5 4 27 27 H 1.09004 * 109.47144 * 29.69780 * 6 5 4 28 28 H 1.09001 * 109.49186 * 67.29185 * 8 7 6 29 29 H 1.08999 * 109.49207 * 307.21639 * 8 7 6 30 30 H 1.09004 * 109.63143 * 186.45915 * 9 8 7 31 31 H 1.09004 * 109.79153 * 65.97703 * 9 8 7 32 32 H 0.96993 * 120.00972 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.63087 * 68.24805 * 19 10 9 34 34 H 1.08996 * 109.63194 * 188.83501 * 19 10 9 35 35 H 1.09005 * 109.48966 * 292.70358 * 20 7 6 36 36 H 1.08993 * 109.49068 * 52.75434 * 20 7 6 37 37 H 1.07991 * 126.58351 * 180.22935 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3086 1.0802 0.0000 4 8 3.5847 0.6617 0.0053 5 6 3.6157 -0.6809 -0.0009 6 6 4.8581 -1.5339 -0.0016 7 7 5.2613 -1.8106 -1.3868 8 6 6.3210 -2.8269 -1.4336 9 6 6.8380 -2.9552 -2.8703 10 7 5.6931 -3.2093 -3.7580 11 6 5.7078 -4.2546 -4.6424 12 1 6.3040 -5.1304 -4.4334 13 6 4.9517 -4.1909 -5.8048 14 7 4.5023 -3.0310 -6.2349 15 14 4.5721 -5.7515 -6.7587 16 1 3.2513 -6.2817 -6.3349 17 1 4.5405 -5.4479 -8.2121 18 1 5.6227 -6.7653 -6.4876 19 6 4.5345 -2.3071 -3.6747 20 6 4.1057 -2.2077 -2.2022 21 6 2.3496 -1.1354 -0.0006 22 1 -0.3633 -0.0006 1.0278 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5142 25 1 1.9815 2.1095 -0.0004 26 1 4.6542 -2.4734 0.5121 27 1 5.6615 -1.0059 0.5121 28 1 5.9203 -3.7856 -1.1042 29 1 7.1393 -2.5297 -0.7777 30 1 7.5416 -3.7854 -2.9336 31 1 7.3341 -2.0314 -3.1679 32 1 3.9743 -2.9864 -7.0473 33 1 4.8113 -1.3203 -4.0459 34 1 3.7143 -2.7084 -4.2699 35 1 3.7359 -3.1751 -1.8621 36 1 3.3173 -1.4617 -2.1033 37 1 2.0368 -2.1690 -0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893994275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:12 Heat of formation + Delta-G solvation = 47.902045 kcal Electronic energy + Delta-G solvation = -18646.218731 eV Core-core repulsion = 15812.160000 eV Total energy + Delta-G solvation = -2834.058732 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.46978 -38.07260 -34.61892 -33.96255 -31.83096 -30.17947 -29.81710 -27.76482 -26.57955 -24.55098 -22.59079 -22.30889 -21.07880 -19.52613 -18.94585 -16.96329 -16.70936 -16.07556 -14.94914 -14.79206 -14.35449 -14.24323 -13.69786 -13.40284 -13.16938 -13.08166 -13.01103 -12.97168 -12.50097 -12.12912 -11.81374 -11.45322 -11.26446 -11.05787 -10.74596 -10.45607 -10.28597 -10.04444 -9.77762 -9.61173 -9.32756 -8.49055 -8.29337 -7.78360 -6.64949 -5.75596 -3.16907 1.85904 2.67619 3.16183 3.39018 3.45853 3.47463 4.45993 4.53391 4.76035 4.97326 5.10045 5.37729 5.40723 5.44897 5.47644 5.58677 5.62712 5.81159 5.87926 5.90790 5.95954 6.14525 6.16484 6.26357 6.32206 6.35358 6.57177 6.66389 6.73058 6.94571 7.25669 7.32027 7.54725 7.67300 7.72277 7.83867 8.45743 9.23384 9.87001 10.45804 11.33127 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026926 B = 0.005808 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.631701 B = 4819.996838 C = 5477.703247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.182 4.182 3 C -0.050 4.050 4 O -0.167 6.167 5 C 0.011 3.989 6 C 0.128 3.872 7 N -0.529 5.529 8 C 0.045 3.955 9 C 0.149 3.851 10 N -0.596 5.596 11 C -0.252 4.252 12 H 0.066 0.934 13 C 0.001 3.999 14 N -0.903 5.903 15 Si 0.902 3.098 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.279 1.279 19 C 0.180 3.820 20 C 0.030 3.970 21 C -0.207 4.207 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.198 0.802 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.026 0.974 32 H 0.254 0.746 33 H 0.026 0.974 34 H 0.088 0.912 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.519 5.315 13.812 15.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.183 4.183 3 C -0.118 4.118 4 O -0.063 6.063 5 C -0.040 4.040 6 C 0.001 3.999 7 N -0.255 5.255 8 C -0.084 4.084 9 C 0.022 3.978 10 N -0.319 5.319 11 C -0.382 4.382 12 H 0.084 0.916 13 C -0.197 4.197 14 N -0.548 5.548 15 Si 0.732 3.268 16 H -0.216 1.216 17 H -0.218 1.218 18 H -0.204 1.204 19 C 0.054 3.946 20 C -0.098 4.098 21 C -0.227 4.227 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.215 0.785 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.106 0.894 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.142 5.936 13.441 15.266 hybrid contribution -0.823 -1.515 -0.225 1.739 sum -4.965 4.420 13.216 14.794 Atomic orbital electron populations 1.20139 0.89493 1.02583 1.01642 1.20427 0.97074 0.92767 1.08060 1.23748 0.80395 0.99501 1.08140 1.84024 1.29097 1.22187 1.70943 1.22252 0.96692 0.80742 1.04335 1.20589 0.91557 0.95178 0.92589 1.62155 1.11241 1.44910 1.07152 1.22654 0.93465 0.91984 1.00323 1.20966 0.90567 0.98427 0.87858 1.44169 1.12934 1.32677 1.42140 1.19216 1.26985 0.93829 0.98129 0.91584 1.25023 1.02060 0.96450 0.96205 1.70036 1.39397 1.22287 1.23036 0.86277 0.78369 0.83045 0.79112 1.21554 1.21750 1.20407 1.20951 0.91295 0.93358 0.89035 1.23127 0.91633 0.97482 0.97602 1.21463 0.91824 0.99772 1.09610 0.91820 0.91813 0.91534 0.78514 0.92389 0.89601 0.95159 0.91778 0.92466 0.95586 0.93627 0.95629 0.89366 0.95724 0.91439 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.40 36.01 0.37 -0.46 16 2 C -0.18 -2.41 6.17 -104.74 -0.65 -3.06 16 3 C -0.05 -0.65 12.01 29.42 0.35 -0.29 16 4 O -0.17 -2.61 10.65 5.73 0.06 -2.55 16 5 C 0.01 0.17 5.49 -35.62 -0.20 -0.03 16 6 C 0.13 1.94 5.81 -4.98 -0.03 1.92 16 7 N -0.53 -9.86 4.77 -235.47 -1.12 -10.99 16 8 C 0.04 0.81 5.58 -3.70 -0.02 0.79 16 9 C 0.15 3.22 6.69 -3.61 -0.02 3.20 16 10 N -0.60 -15.47 3.03 -171.74 -0.52 -15.99 16 11 C -0.25 -7.05 9.63 -15.06 -0.15 -7.20 16 12 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 13 C 0.00 0.03 4.93 -17.43 -0.09 -0.06 16 14 N -0.90 -26.75 11.16 55.49 0.62 -26.13 16 15 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.18 4.53 5.45 -3.36 -0.02 4.51 16 20 C 0.03 0.63 4.96 -3.46 -0.02 0.61 16 21 C -0.21 -3.05 9.07 -39.70 -0.36 -3.41 16 22 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.20 1.77 8.06 -52.48 -0.42 1.34 16 26 H 0.06 0.80 8.08 -51.93 -0.42 0.39 16 27 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 30 H 0.06 1.17 7.95 -51.93 -0.41 0.76 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 2.45 6.11 -51.93 -0.32 2.13 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 1.36 5.56 -51.93 -0.29 1.07 16 37 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 299.95 15.07 4.52 4.52 Total: -1.00 -31.28 299.95 -7.92 -39.20 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -5.64 Total: -1.49 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -0.81 Total: -3.47 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -1.02 Total: -53.11 kcal Atomic # 8 Polarization: -2.61 SS G_CDS: 0.06 Total: -2.55 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.28 -7.92 -39.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893994275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.104 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds