Wall clock time and date at job start Thu Apr 9 2020 12:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 120.00146 * 2 1 4 4 H 1.48497 * 109.46635 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.46902 * 120.00181 * 3 2 1 6 6 H 1.48500 * 109.47451 * 240.00396 * 3 2 1 7 7 C 1.38817 * 120.00393 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00212 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99536 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00050 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.63535 * 328.14016 * 10 9 7 12 12 C 1.55154 * 110.72165 * 205.00153 * 10 9 7 13 13 C 1.54900 * 101.58246 * 206.13011 * 12 10 9 14 14 N 1.47425 * 104.83128 * 37.00806 * 13 12 10 15 15 C 1.34779 * 125.64807 * 155.83832 * 14 13 12 16 16 O 1.21616 * 120.00303 * 180.02562 * 15 14 13 17 17 C 1.47100 * 120.00237 * 0.02562 * 15 14 13 18 18 C 1.32993 * 120.00157 * 174.03489 * 17 15 14 19 19 C 1.50695 * 120.00014 * 352.94834 * 18 17 15 20 20 C 1.53001 * 117.49971 * 181.82016 * 19 18 17 21 21 C 1.53003 * 117.50014 * 113.16470 * 19 18 17 22 22 C 1.47017 * 108.70404 * 335.87208 * 14 13 12 23 23 H 0.97000 * 119.99346 * 180.02562 * 1 2 3 24 24 H 0.97000 * 120.00162 * 0.02562 * 9 7 2 25 25 H 1.09008 * 111.00126 * 324.20465 * 12 10 9 26 26 H 1.08996 * 111.00580 * 88.05021 * 12 10 9 27 27 H 1.09000 * 110.37214 * 155.84352 * 13 12 10 28 28 H 1.09001 * 110.36764 * 278.06030 * 13 12 10 29 29 H 1.08001 * 119.99686 * 354.03518 * 17 15 14 30 30 H 1.08005 * 120.00228 * 172.94908 * 18 17 15 31 31 H 1.09003 * 115.55550 * 327.49272 * 19 18 17 32 32 H 1.09005 * 117.49958 * 0.02562 * 20 19 18 33 33 H 1.08997 * 117.49939 * 145.02183 * 20 19 18 34 34 H 1.09004 * 117.49984 * 214.98420 * 21 19 18 35 35 H 1.09003 * 117.49314 * 359.97438 * 21 19 18 36 36 H 1.09006 * 109.88522 * 241.64479 * 22 14 13 37 37 H 1.09000 * 109.88322 * 120.48057 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6963 1.2124 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 3.0006 -3.5563 -0.5390 12 6 1.1936 -4.7898 -0.6139 13 6 1.7912 -6.0433 0.0726 14 7 2.1105 -5.6063 1.4439 15 6 2.2122 -6.4103 2.5209 16 8 2.4814 -5.9383 3.6089 17 6 1.9975 -7.8588 2.3804 18 6 2.2133 -8.6664 3.4147 19 6 2.8277 -8.1237 4.6791 20 6 3.0899 -9.1115 5.8177 21 6 1.9523 -8.0941 5.9337 22 6 2.2990 -4.1483 1.4423 23 1 -0.4849 -0.8401 0.0004 24 1 0.3556 -2.3880 -0.0005 25 1 0.1428 -4.6646 -0.3523 26 1 1.3223 -4.8378 -1.6951 27 1 1.0588 -6.8504 0.0926 28 1 2.6949 -6.3647 -0.4450 29 1 1.6646 -8.2663 1.4372 30 1 1.9484 -9.7114 3.3484 31 1 3.5410 -7.3107 4.5440 32 1 2.8185 -10.1542 5.6519 33 1 3.9756 -8.9482 6.4317 34 1 2.0899 -7.2617 6.6239 35 1 0.9319 -8.4668 5.8442 36 1 3.3156 -3.9055 1.7518 37 1 1.5822 -3.6811 2.1176 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968316135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:26:02 Heat of formation + Delta-G solvation = 28.342615 kcal Electronic energy + Delta-G solvation = -17911.628968 eV Core-core repulsion = 15076.722076 eV Total energy + Delta-G solvation = -2834.906892 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.87452 -37.97228 -36.77320 -34.39741 -32.55983 -31.45139 -29.50826 -27.60633 -24.61131 -23.25197 -22.51154 -22.36326 -21.02708 -20.00746 -18.52383 -17.44741 -17.07033 -16.09559 -15.43913 -15.17655 -14.66617 -14.08762 -13.89599 -13.62766 -13.45634 -13.18954 -12.88318 -12.31358 -12.03415 -11.71722 -11.62404 -11.48480 -11.21792 -11.09811 -10.72915 -10.66349 -10.42405 -10.30911 -10.00187 -9.44635 -9.23571 -9.13393 -8.99319 -8.28035 -7.15795 -6.16522 -3.18535 1.32158 3.27688 3.39409 3.50670 3.54198 3.71361 3.92204 4.48530 4.63095 4.67953 4.86214 4.90349 5.00277 5.13469 5.18297 5.28706 5.34850 5.49875 5.52044 5.66295 5.68227 5.79482 5.86976 5.95199 6.02973 6.10666 6.15574 6.23035 6.29246 6.43735 6.48006 6.70721 6.80027 7.75087 7.82048 8.43378 8.69147 9.13082 9.99674 10.12793 11.31365 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.034468 B = 0.004245 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.147102 B = 6593.912182 C = 7098.768546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.040 4.040 3 Si 1.080 2.920 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.340 4.340 8 H 0.067 0.933 9 N -0.724 5.724 10 C 0.177 3.823 11 H 0.069 0.931 12 C -0.144 4.144 13 C 0.103 3.897 14 N -0.611 5.611 15 C 0.550 3.450 16 O -0.539 6.539 17 C -0.209 4.209 18 C -0.041 4.041 19 C -0.125 4.125 20 C -0.188 4.188 21 C -0.157 4.157 22 C 0.084 3.916 23 H 0.255 0.745 24 H 0.370 0.630 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.098 -19.292 3.454 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.238 4.238 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.471 4.471 8 H 0.085 0.915 9 N -0.365 5.365 10 C 0.065 3.935 11 H 0.087 0.913 12 C -0.183 4.183 13 C -0.020 4.020 14 N -0.344 5.344 15 C 0.341 3.659 16 O -0.419 6.419 17 C -0.230 4.230 18 C -0.061 4.061 19 C -0.143 4.143 20 C -0.225 4.225 21 C -0.194 4.194 22 C -0.041 4.041 23 H 0.067 0.933 24 H 0.204 0.796 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.303 -17.337 4.062 18.319 hybrid contribution -0.158 -1.794 -0.092 1.803 sum 4.145 -19.130 3.970 19.973 Atomic orbital electron populations 1.70894 1.06088 1.28493 1.52978 1.25821 0.96999 1.01118 0.99909 0.83241 0.74258 0.75474 0.75955 1.20977 1.22127 1.22138 1.20073 0.92134 0.85626 1.49245 0.91494 1.42380 1.04844 1.00459 1.88841 1.21150 0.95230 0.85811 0.91359 0.91293 1.23109 1.00535 0.94418 1.00206 1.22292 0.99517 0.97741 0.82489 1.48502 1.68988 1.09013 1.07927 1.18281 0.77735 0.86769 0.83080 1.90746 1.48953 1.76691 1.25496 1.22658 1.07143 0.93062 1.00116 1.23058 0.91845 0.98457 0.92751 1.21553 1.03692 1.01325 0.87718 1.23082 1.00733 0.95746 1.02985 1.22800 0.95628 1.01386 0.99552 1.23146 1.01209 0.77814 1.01956 0.93345 0.79642 0.90780 0.90019 0.91092 0.91463 0.85506 0.85785 0.84980 0.89058 0.88747 0.88544 0.89102 0.92388 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.87 13.70 55.49 0.76 -28.11 16 2 C -0.04 -1.17 5.50 -17.43 -0.10 -1.26 16 3 Si 1.08 25.79 29.92 -169.99 -5.09 20.70 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.34 -9.44 9.96 -15.06 -0.15 -9.59 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.79 5.15 -51.65 -0.27 -18.06 16 10 C 0.18 3.44 3.61 -66.10 -0.24 3.20 16 11 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 12 C -0.14 -2.16 6.71 -24.59 -0.17 -2.33 16 13 C 0.10 1.32 6.56 -2.53 -0.02 1.30 16 14 N -0.61 -9.99 3.33 -171.92 -0.57 -10.56 16 15 C 0.55 9.08 7.70 -12.66 -0.10 8.99 16 16 O -0.54 -10.58 13.64 5.26 0.07 -10.51 16 17 C -0.21 -2.54 9.47 -37.81 -0.36 -2.89 16 18 C -0.04 -0.45 9.74 -36.13 -0.35 -0.80 16 19 C -0.13 -1.54 4.35 -91.77 -0.40 -1.94 16 20 C -0.19 -1.81 10.24 -26.70 -0.27 -2.08 16 21 C -0.16 -1.78 10.24 -26.70 -0.27 -2.05 16 22 C 0.08 1.64 6.62 -3.07 -0.02 1.62 16 23 H 0.26 7.70 6.77 -40.82 -0.28 7.42 16 24 H 0.37 9.36 6.59 -40.82 -0.27 9.09 16 25 H 0.07 1.16 8.01 -51.92 -0.42 0.75 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 0.73 7.08 -51.93 -0.37 0.37 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.13 1.18 6.82 -52.49 -0.36 0.83 16 30 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.13 2.00 6.23 -51.93 -0.32 1.67 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 1.56 8.03 -51.93 -0.42 1.15 16 LS Contribution 308.26 15.07 4.65 4.65 Total: -1.00 -32.67 308.26 -8.32 -40.99 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.44 Total: 8.74 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -2.44 Total: -7.83 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.08 Total: -56.73 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.07 Total: -10.51 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.09 Total: 20.70 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.67 -8.32 -40.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968316135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.330 kcal (2) G-P(sol) polarization free energy of solvation -32.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds