Wall clock time and date at job start Thu Apr 9 2020 12:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99939 * 2 1 4 4 H 1.48495 * 109.47075 * 274.17419 * 3 2 1 5 5 H 1.48495 * 109.47310 * 34.17554 * 3 2 1 6 6 H 1.48500 * 109.46940 * 154.17724 * 3 2 1 7 7 C 1.38813 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00179 * 196.64301 * 7 2 1 9 9 N 1.36936 * 119.99833 * 16.64641 * 7 2 1 10 10 C 1.47160 * 120.71288 * 25.89870 * 9 7 2 11 11 C 1.54483 * 108.00930 * 132.63066 * 10 9 7 12 12 H 1.08999 * 112.34541 * 181.98320 * 11 10 9 13 13 C 1.54541 * 107.85847 * 306.76778 * 11 10 9 14 14 C 1.53738 * 104.95143 * 88.85668 * 13 11 10 15 15 C 1.54540 * 104.95598 * 359.97438 * 14 13 11 16 16 H 1.09004 * 112.68057 * 146.56502 * 15 14 13 17 17 C 1.47164 * 120.70966 * 205.87180 * 9 7 2 18 18 N 1.48306 * 106.89499 * 58.49202 * 11 10 9 19 19 C 1.34779 * 128.07733 * 106.80358 * 18 11 10 20 20 O 1.21284 * 120.00238 * 179.68037 * 19 18 11 21 21 C 1.50702 * 120.00047 * 359.95274 * 19 18 11 22 22 C 1.53002 * 117.49967 * 248.47116 * 21 19 18 23 23 C 1.53000 * 117.49766 * 179.81169 * 21 19 18 24 24 H 0.96993 * 119.99442 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.75101 * 252.36979 * 10 9 7 26 26 H 1.09005 * 109.74941 * 13.04557 * 10 9 7 27 27 H 1.08997 * 110.36414 * 207.57594 * 13 11 10 28 28 H 1.08998 * 110.35897 * 329.78370 * 13 11 10 29 29 H 1.09000 * 110.41626 * 241.06648 * 14 13 11 30 30 H 1.08995 * 110.20242 * 118.82454 * 14 13 11 31 31 H 1.08998 * 109.75245 * 107.62999 * 17 9 7 32 32 H 1.09006 * 109.78880 * 346.92282 * 17 9 7 33 33 H 1.08997 * 115.54610 * 34.14108 * 21 19 18 34 34 H 1.08998 * 117.49495 * 0.02562 * 22 21 19 35 35 H 1.08997 * 117.49589 * 145.01892 * 22 21 19 36 36 H 1.09004 * 117.49524 * 214.97919 * 23 21 19 37 37 H 1.08995 * 117.50299 * 0.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4094 2.0973 -1.3963 5 1 1.4946 2.6256 0.7864 6 1 3.5891 1.4162 0.6099 7 6 2.0103 -1.2022 0.0005 8 1 3.0564 -1.2217 0.2684 9 7 1.3686 -2.3633 -0.3387 10 6 0.1885 -2.3408 -1.2176 11 6 0.3787 -3.4261 -2.3004 12 1 -0.4444 -3.4476 -3.0147 13 6 1.7479 -3.1867 -2.9760 14 6 2.7525 -3.9869 -2.1309 15 6 1.9045 -4.6408 -1.0166 16 1 2.2827 -5.6192 -0.7200 17 6 1.8447 -3.6606 0.1675 18 7 0.5394 -4.7188 -1.5915 19 6 -0.3462 -5.7304 -1.4965 20 8 -0.0572 -6.7333 -0.8788 21 6 -1.6931 -5.6178 -2.1630 22 6 -2.9216 -5.5027 -1.2582 23 6 -2.6522 -6.8015 -2.0221 24 1 -0.4849 0.8400 0.0004 25 1 -0.7085 -2.5521 -0.6354 26 1 0.0993 -1.3622 -1.6893 27 1 1.7360 -3.5598 -4.0000 28 1 1.9972 -2.1257 -2.9624 29 1 3.4996 -3.3219 -1.6977 30 1 3.2325 -4.7519 -2.7411 31 1 1.1549 -4.0369 0.9229 32 1 2.8383 -3.5455 0.6008 33 1 -1.7075 -5.0674 -3.1037 34 1 -2.7555 -5.5080 -0.1810 35 1 -3.7444 -4.8769 -1.6040 36 1 -3.2979 -7.0297 -2.8702 37 1 -2.3091 -7.6616 -1.4471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017285784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:07 Heat of formation + Delta-G solvation = 26.521762 kcal Electronic energy + Delta-G solvation = -19437.265821 eV Core-core repulsion = 16602.279971 eV Total energy + Delta-G solvation = -2834.985850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16424 -38.25510 -35.69126 -34.09392 -31.44639 -30.77798 -30.34211 -26.38852 -24.49461 -23.61404 -22.53233 -22.29190 -20.47456 -19.78785 -18.04259 -17.55261 -16.15146 -15.48014 -15.06518 -14.78788 -14.51894 -14.02958 -13.44451 -13.24512 -12.93681 -12.80901 -12.38743 -11.96865 -11.87917 -11.55179 -11.44809 -11.15509 -10.88109 -10.58709 -10.53440 -10.41630 -10.32861 -10.27553 -10.03206 -9.81595 -9.67287 -9.36372 -8.57848 -8.18385 -6.73333 -5.84657 -3.26257 2.90250 3.33010 3.36706 3.41418 3.42343 4.06792 4.43485 4.76244 4.93675 5.04300 5.12865 5.22403 5.31493 5.34139 5.44517 5.59097 5.70045 5.77797 5.83753 5.87621 6.07474 6.15421 6.18615 6.22850 6.30853 6.40082 6.41665 6.56095 6.74534 6.84194 6.97740 7.19922 7.47250 7.71976 8.15766 8.33075 8.63508 9.12632 9.75175 10.32685 11.23763 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.030273 B = 0.007233 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.688445 B = 3870.180291 C = 4276.255818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.174 3.826 11 C 0.097 3.903 12 H 0.084 0.916 13 C -0.112 4.112 14 C -0.111 4.111 15 C 0.114 3.886 16 H 0.088 0.912 17 C 0.138 3.862 18 N -0.602 5.602 19 C 0.559 3.441 20 O -0.563 6.563 21 C -0.185 4.185 22 C -0.149 4.149 23 C -0.153 4.153 24 H 0.254 0.746 25 H 0.025 0.975 26 H 0.092 0.908 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.020 0.980 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.637 -7.336 -6.888 10.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.008 4.008 12 H 0.102 0.898 13 C -0.150 4.150 14 C -0.149 4.149 15 C 0.010 3.990 16 H 0.106 0.894 17 C 0.011 3.989 18 N -0.333 5.333 19 C 0.348 3.652 20 O -0.443 6.443 21 C -0.206 4.206 22 C -0.187 4.187 23 C -0.190 4.190 24 H 0.064 0.936 25 H 0.043 0.957 26 H 0.110 0.890 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.137 0.863 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.647 -7.772 -6.520 10.277 hybrid contribution 0.334 1.062 -0.019 1.114 sum -1.313 -6.709 -6.538 9.460 Atomic orbital electron populations 1.70027 1.05201 1.25529 1.54189 1.25018 0.95313 0.98342 1.00961 0.86257 0.79128 0.83706 0.77585 1.21465 1.21836 1.20419 1.19205 0.92544 0.84404 1.41794 0.91349 1.44059 1.32643 1.01054 1.53321 1.21390 0.88989 0.95815 0.89102 1.23488 0.97450 0.84145 0.95703 0.89754 1.22207 0.94231 1.01802 0.96784 1.22197 0.97913 0.98481 0.96333 1.22885 0.81542 0.99057 0.95505 0.89356 1.21439 0.98277 0.86730 0.92469 1.49139 1.15595 1.16601 1.51996 1.19141 0.84425 0.81504 0.80105 1.90632 1.78594 1.30499 1.44567 1.22109 0.90098 1.06048 1.02317 1.22898 0.96900 1.00226 0.98646 1.22928 1.00532 0.92638 1.02902 0.93583 0.95741 0.88999 0.93143 0.89510 0.89933 0.92965 0.96242 0.91900 0.86299 0.88320 0.87918 0.88312 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.18 11.15 55.49 0.62 -24.56 16 2 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16 3 Si 0.90 20.87 29.59 -169.99 -5.03 15.84 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.25 -6.47 9.64 -15.06 -0.15 -6.62 16 8 H 0.07 1.74 7.87 -52.48 -0.41 1.33 16 9 N -0.59 -13.96 2.29 -170.74 -0.39 -14.35 16 10 C 0.17 3.90 4.63 -2.90 -0.01 3.89 16 11 C 0.10 1.74 4.02 -65.35 -0.26 1.48 16 12 H 0.08 1.32 6.85 -51.93 -0.36 0.97 16 13 C -0.11 -1.87 6.16 -25.54 -0.16 -2.03 16 14 C -0.11 -1.84 6.16 -25.54 -0.16 -2.00 16 15 C 0.11 2.13 4.12 -65.68 -0.27 1.86 16 16 H 0.09 1.61 7.93 -51.93 -0.41 1.20 16 17 C 0.14 2.93 6.01 -3.25 -0.02 2.91 16 18 N -0.60 -11.26 2.74 -152.71 -0.42 -11.68 16 19 C 0.56 10.52 7.71 -10.98 -0.08 10.43 16 20 O -0.56 -12.15 16.57 5.55 0.09 -12.06 16 21 C -0.18 -2.74 5.58 -91.77 -0.51 -3.25 16 22 C -0.15 -2.00 10.24 -26.69 -0.27 -2.27 16 23 C -0.15 -1.93 10.05 -26.69 -0.27 -2.20 16 24 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 2.26 6.29 -51.93 -0.33 1.93 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.09 1.58 7.85 -51.93 -0.41 1.18 16 29 H 0.08 1.42 7.84 -51.93 -0.41 1.02 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 33 H 0.12 1.55 7.13 -51.93 -0.37 1.18 16 34 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.10 1.46 7.67 -51.93 -0.40 1.06 16 LS Contribution 295.58 15.07 4.45 4.45 Total: -1.00 -29.85 295.58 -8.52 -38.37 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.60 Total: 1.81 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.25 Total: 2.17 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.19 Total: -50.59 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.85 -8.52 -38.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017285784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.895 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds