Wall clock time and date at job start Thu Apr 9 2020 12:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00326 * 2 1 4 4 H 1.48497 * 109.47296 * 274.99104 * 3 2 1 5 5 H 1.48500 * 109.46870 * 34.98795 * 3 2 1 6 6 H 1.48500 * 109.47364 * 154.98598 * 3 2 1 7 7 C 1.38811 * 119.99389 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99649 * 185.05581 * 7 2 1 9 9 N 1.36937 * 120.00545 * 5.05133 * 7 2 1 10 10 C 1.47071 * 136.05481 * 353.52445 * 9 7 2 11 11 C 1.53504 * 87.98208 * 207.15055 * 10 9 7 12 12 C 1.47063 * 136.05942 * 173.56314 * 9 7 2 13 13 H 1.09003 * 113.47455 * 267.63329 * 12 9 7 14 14 C 1.53003 * 113.46631 * 38.07103 * 12 9 7 15 15 N 1.46507 * 109.47006 * 285.49407 * 14 12 9 16 16 C 1.34777 * 119.99518 * 180.02562 * 15 14 12 17 17 O 1.21276 * 120.00521 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99545 * 179.97438 * 16 15 14 19 19 C 1.54632 * 111.04047 * 295.33319 * 18 16 15 20 20 C 1.51167 * 104.69591 * 217.36349 * 19 18 16 21 21 C 1.30526 * 111.12119 * 16.37676 * 20 19 18 22 22 C 1.51103 * 111.10219 * 0.03563 * 21 20 19 23 23 H 0.97000 * 119.99460 * 359.97438 * 1 2 3 24 24 H 1.08992 * 113.46740 * 321.92594 * 10 9 7 25 25 H 1.09000 * 113.46923 * 92.31473 * 10 9 7 26 26 H 1.08994 * 114.20495 * 220.34634 * 11 10 9 27 27 H 1.08997 * 114.20866 * 87.51487 * 11 10 9 28 28 H 1.08995 * 109.47176 * 45.49676 * 14 12 9 29 29 H 1.09001 * 109.47253 * 165.49271 * 14 12 9 30 30 H 0.96992 * 119.99667 * 359.97438 * 15 14 12 31 31 H 1.09006 * 110.91641 * 59.29782 * 18 16 15 32 32 H 1.09008 * 110.38487 * 336.14535 * 19 18 16 33 33 H 1.08994 * 110.38980 * 98.52298 * 19 18 16 34 34 H 1.08000 * 124.43098 * 196.43163 * 20 19 18 35 35 H 1.07997 * 124.44884 * 180.02562 * 21 20 19 36 36 H 1.08998 * 110.38651 * 224.74759 * 22 21 20 37 37 H 1.09002 * 110.48175 * 102.42416 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5045 2.6198 0.8028 6 1 3.5966 1.4119 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0870 -1.2041 0.0819 9 7 1.3295 -2.3858 -0.1055 10 6 -0.0822 -2.7980 -0.1164 11 6 0.3665 -4.1565 0.4401 12 6 1.6883 -3.8040 -0.2562 13 1 1.7331 -4.1326 -1.2945 14 6 2.9265 -4.2078 0.5468 15 7 4.1268 -3.6849 -0.1106 16 6 5.3427 -3.9190 0.4217 17 8 5.4432 -4.5619 1.4451 18 6 6.5774 -3.3816 -0.2548 19 6 6.7758 -4.0301 -1.6445 20 6 8.2715 -4.2048 -1.7762 21 6 8.8613 -4.0996 -0.6165 22 6 7.8577 -3.8382 0.4825 23 1 -0.4849 0.8401 0.0004 24 1 -0.7055 -2.2305 0.5745 25 1 -0.5093 -2.8577 -1.1175 26 1 -0.1531 -5.0108 0.0064 27 1 0.4306 -4.1949 1.5275 28 1 2.8560 -3.7976 1.5542 29 1 2.9860 -5.2949 0.6007 30 1 4.0464 -3.1710 -0.9292 31 1 6.5370 -2.2951 -0.3323 32 1 6.2755 -4.9977 -1.6869 33 1 6.3992 -3.3724 -2.4278 34 1 8.7849 -4.3912 -2.7079 35 1 9.9266 -4.1881 -0.4626 36 1 8.2162 -3.0501 1.1445 37 1 7.6654 -4.7499 1.0481 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038136521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:30 Heat of formation + Delta-G solvation = 32.490483 kcal Electronic energy + Delta-G solvation = -18381.056437 eV Core-core repulsion = 15546.329410 eV Total energy + Delta-G solvation = -2834.727027 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.98640 -38.36089 -37.28392 -34.03893 -32.24797 -29.94685 -28.23644 -28.01814 -27.21350 -23.49235 -22.75940 -21.41820 -19.76335 -19.13665 -18.83072 -17.28743 -16.46221 -16.26018 -15.46330 -15.26463 -14.69094 -14.10794 -13.89910 -13.38775 -12.96079 -12.79410 -12.39914 -12.22401 -11.94130 -11.62710 -11.55920 -11.31672 -11.13517 -11.10606 -10.98870 -10.80710 -10.57133 -10.01446 -9.87022 -9.57828 -9.17375 -8.96544 -8.84385 -8.54433 -6.91347 -5.81257 -3.12912 2.16594 2.95707 3.35393 3.40616 3.43131 3.57282 4.40751 4.47124 4.59277 4.98120 5.15495 5.16986 5.27279 5.38044 5.54855 5.57356 5.62272 5.71491 5.74095 5.86019 5.90372 5.93528 6.10050 6.17391 6.31267 6.39584 6.41482 6.58132 6.71999 6.78863 6.91451 7.21460 7.36410 7.55367 7.92785 7.94269 8.58596 8.99797 9.67008 10.60947 11.36558 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020381 B = 0.006385 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.515165 B = 4383.884891 C = 5314.709061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.216 4.216 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.154 3.846 11 C -0.162 4.162 12 C 0.127 3.873 13 H 0.048 0.952 14 C 0.121 3.879 15 N -0.711 5.711 16 C 0.520 3.480 17 O -0.552 6.552 18 C -0.118 4.118 19 C -0.089 4.089 20 C -0.170 4.170 21 C -0.162 4.162 22 C -0.087 4.087 23 H 0.253 0.747 24 H 0.068 0.932 25 H 0.027 0.973 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.404 0.596 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.073 0.927 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.002 -8.442 -3.606 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.343 4.343 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.028 3.972 11 C -0.201 4.201 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.004 4.004 15 N -0.361 5.361 16 C 0.305 3.695 17 O -0.431 6.431 18 C -0.139 4.139 19 C -0.127 4.127 20 C -0.188 4.188 21 C -0.180 4.180 22 C -0.124 4.124 23 H 0.063 0.937 24 H 0.086 0.914 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.238 0.762 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.092 0.908 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.068 -8.514 -2.832 14.248 hybrid contribution 0.411 1.320 -0.607 1.510 sum 11.479 -7.195 -3.439 13.977 Atomic orbital electron populations 1.69852 1.05032 1.25334 1.56034 1.24817 0.95641 0.97452 1.02400 0.86185 0.78822 0.83842 0.77488 1.21625 1.21682 1.20572 1.18865 0.90558 0.81428 1.43456 0.90126 1.45658 1.02571 0.99974 1.84518 1.21974 0.88611 0.89102 0.97474 1.23676 0.97091 0.98938 1.00391 1.22415 0.91936 0.87609 0.96146 0.93478 1.21798 0.83607 0.97277 0.97686 1.45968 1.05798 1.55349 1.28964 1.20276 0.84627 0.79884 0.84678 1.90644 1.86841 1.41092 1.24515 1.22185 0.93578 1.01961 0.96224 1.21326 0.94721 1.01129 0.95506 1.23222 0.95507 1.01879 0.98232 1.23323 0.99097 1.00536 0.95055 1.21269 0.91403 1.02765 0.96985 0.93658 0.91399 0.95569 0.92331 0.90230 0.91205 0.92371 0.76171 0.87609 0.90309 0.90276 0.85738 0.85760 0.90850 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.77 11.62 55.49 0.65 -26.12 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 21.77 29.56 -169.99 -5.02 16.74 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.22 -5.74 10.54 -15.06 -0.16 -5.90 16 8 H 0.08 2.06 7.61 -52.49 -0.40 1.66 16 9 N -0.60 -14.54 3.65 -176.98 -0.65 -15.18 16 10 C 0.15 3.51 7.31 -8.50 -0.06 3.44 16 11 C -0.16 -2.93 8.03 -26.21 -0.21 -3.14 16 12 C 0.13 2.42 4.10 -72.39 -0.30 2.12 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 14 C 0.12 2.19 5.52 -4.04 -0.02 2.17 16 15 N -0.71 -12.03 5.32 -60.29 -0.32 -12.35 16 16 C 0.52 8.76 7.06 -10.99 -0.08 8.69 16 17 O -0.55 -11.08 15.53 5.56 0.09 -11.00 16 18 C -0.12 -1.58 3.54 -90.06 -0.32 -1.90 16 19 C -0.09 -1.01 6.37 -26.80 -0.17 -1.18 16 20 C -0.17 -1.74 10.78 -35.66 -0.38 -2.13 16 21 C -0.16 -1.71 10.78 -35.70 -0.38 -2.09 16 22 C -0.09 -1.09 6.16 -26.83 -0.17 -1.26 16 23 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.07 1.72 7.31 -51.93 -0.38 1.34 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 1.44 8.12 -51.93 -0.42 1.01 16 28 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.40 6.51 8.47 -40.82 -0.35 6.16 16 31 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.08 0.92 7.88 -51.92 -0.41 0.51 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.33 7.00 -51.93 -0.36 0.96 16 LS Contribution 308.66 15.07 4.65 4.65 Total: -1.00 -31.21 308.66 -8.64 -39.85 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.68 Total: 4.84 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -2.35 Total: -1.43 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.32 Total: -53.66 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.21 -8.64 -39.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038136521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.343 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds