Wall clock time and date at job start Thu Apr 9 2020 12:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46510 * 109.46836 * 2 1 4 4 C 1.37092 * 119.99756 * 264.76539 * 3 2 1 5 5 H 1.08004 * 119.99799 * 138.84781 * 4 3 2 6 6 C 1.38951 * 120.00480 * 318.85483 * 4 3 2 7 7 N 1.31412 * 119.99537 * 341.82973 * 6 4 3 8 8 Si 1.86797 * 120.00332 * 161.83119 * 6 4 3 9 9 H 1.48505 * 109.46884 * 60.00257 * 8 6 4 10 10 H 1.48500 * 109.47143 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47253 * 300.00221 * 8 6 4 12 12 C 1.34774 * 119.99862 * 84.76770 * 3 2 1 13 13 O 1.21295 * 119.99824 * 179.97438 * 12 3 2 14 14 C 1.50703 * 120.00094 * 0.02562 * 12 3 2 15 15 C 1.53002 * 109.46929 * 179.97438 * 14 12 3 16 16 C 1.53005 * 109.46980 * 179.97438 * 15 14 12 17 17 N 1.46497 * 109.46687 * 179.97438 * 16 15 14 18 18 C 1.36346 * 125.63364 * 90.00975 * 17 16 15 19 19 C 1.34844 * 108.21966 * 179.97438 * 18 17 16 20 20 C 1.40889 * 107.41912 * 0.02562 * 19 18 17 21 21 C 1.34850 * 107.41746 * 359.97438 * 20 19 18 22 22 H 1.09004 * 109.46888 * 60.00396 * 1 2 3 23 23 H 1.09005 * 109.46704 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47760 * 299.99935 * 1 2 3 25 25 H 1.08994 * 109.47241 * 239.99979 * 2 1 3 26 26 H 1.09004 * 109.46888 * 119.99603 * 2 1 3 27 27 H 0.97003 * 119.99527 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.47657 * 59.99549 * 14 12 3 29 29 H 1.08998 * 109.46825 * 299.99696 * 14 12 3 30 30 H 1.08999 * 109.46992 * 59.99752 * 15 14 12 31 31 H 1.08998 * 109.47130 * 299.99522 * 15 14 12 32 32 H 1.09007 * 109.46800 * 60.00030 * 16 15 14 33 33 H 1.08998 * 109.47202 * 299.99972 * 16 15 14 34 34 H 1.08004 * 125.88640 * 359.70329 * 18 17 16 35 35 H 1.08006 * 126.29453 * 179.97438 * 19 18 17 36 36 H 1.08001 * 126.29720 * 180.02562 * 20 19 18 37 37 H 1.07999 * 125.89209 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3488 1.9915 -1.1823 5 1 2.0741 3.0218 -1.3535 6 6 3.0372 1.2843 -2.1605 7 7 3.6791 0.1819 -1.8450 8 14 3.0500 1.9005 -3.9238 9 1 3.6537 3.2565 -3.9699 10 1 3.8492 0.9746 -4.7660 11 1 1.6579 1.9607 -4.4374 12 6 2.1425 2.0521 1.1623 13 8 2.5472 3.1956 1.1624 14 6 1.7797 1.3812 2.4621 15 6 2.0116 2.3538 3.6202 16 6 1.6426 1.6728 4.9397 17 7 1.8653 2.6039 6.0486 18 6 0.9457 3.4772 6.5493 19 6 1.5199 4.1604 7.5602 20 6 2.8425 3.6922 7.6880 21 6 3.0261 2.7403 6.7506 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 4.1593 -0.3120 -2.5280 28 1 2.4017 0.4969 2.6006 29 1 0.7304 1.0871 2.4386 30 1 1.3898 3.2382 3.4818 31 1 3.0610 2.6474 3.6435 32 1 2.2642 0.7881 5.0782 33 1 0.5931 1.3794 4.9162 34 1 -0.0665 3.6033 6.1944 35 1 1.0521 4.9264 8.1610 36 1 3.5747 4.0324 8.4053 37 1 3.9356 2.1821 6.5847 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344189727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:26:57 Heat of formation + Delta-G solvation = 8.671008 kcal Electronic energy + Delta-G solvation = -18005.415021 eV Core-core repulsion = 15169.655104 eV Total energy + Delta-G solvation = -2835.759917 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.97299 -38.65222 -35.26345 -34.43857 -32.13197 -30.82900 -29.45620 -28.65677 -26.72139 -24.62282 -22.49686 -21.75886 -20.34645 -19.82792 -18.77089 -17.28252 -16.74348 -15.82343 -15.42771 -14.84662 -14.41018 -14.14549 -13.94595 -13.39565 -13.20085 -12.93293 -12.66997 -12.32593 -11.98910 -11.95127 -11.90068 -11.64772 -11.34313 -11.29315 -11.03542 -10.91465 -10.65502 -10.37713 -10.30673 -10.10832 -8.92945 -8.51617 -8.38781 -8.04494 -7.43681 -6.33493 -4.01972 2.41236 3.08974 3.16832 3.18903 3.24227 3.27861 3.91052 4.15203 4.74039 4.76561 4.99737 5.12485 5.23243 5.27573 5.32653 5.53307 5.60116 5.71823 5.74531 5.78759 5.85598 6.04746 6.15819 6.27235 6.37274 6.37585 6.44350 6.48967 6.55726 6.83770 7.10848 7.18307 7.36346 7.51181 7.57126 8.28876 8.50933 9.19182 9.39168 10.01492 10.71830 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.040431 B = 0.004271 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.364833 B = 6553.666468 C = 6817.626093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.442 5.442 4 C -0.311 4.311 5 H 0.087 0.913 6 C 0.039 3.961 7 N -0.873 5.873 8 Si 0.918 3.082 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.461 3.539 13 O -0.581 6.581 14 C -0.133 4.133 15 C -0.114 4.114 16 C 0.102 3.898 17 N -0.443 5.443 18 C -0.015 4.015 19 C -0.209 4.209 20 C -0.209 4.209 21 C -0.013 4.013 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.103 0.897 26 H 0.048 0.952 27 H 0.268 0.732 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.158 0.842 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.446 -2.205 11.788 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 N -0.162 5.162 4 C -0.439 4.439 5 H 0.104 0.896 6 C -0.165 4.165 7 N -0.511 5.511 8 Si 0.745 3.255 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.249 3.751 13 O -0.464 6.464 14 C -0.174 4.174 15 C -0.153 4.153 16 C -0.019 4.019 17 N -0.117 5.117 18 C -0.145 4.145 19 C -0.233 4.233 20 C -0.234 4.234 21 C -0.144 4.144 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.121 0.879 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.175 0.825 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.182 -2.046 11.375 12.666 hybrid contribution 0.069 0.055 -0.934 0.938 sum -5.113 -1.992 10.442 11.796 Atomic orbital electron populations 1.22228 0.98279 1.00323 1.01519 1.21449 0.91549 0.85698 1.03415 1.43451 1.56149 1.11703 1.04882 1.19331 1.34924 0.98520 0.91076 0.89579 1.25415 0.94004 0.96548 1.00563 1.69917 1.29494 1.17586 1.34080 0.86139 0.78365 0.78882 0.82150 1.19723 1.20963 1.19886 1.20306 0.81996 0.87917 0.84883 1.90531 1.50130 1.18867 1.86909 1.21569 1.02365 0.99228 0.94217 1.21647 1.03717 0.98845 0.91044 1.22018 1.02961 0.91609 0.85321 1.44240 1.10809 1.30369 1.26320 1.21821 0.96012 0.96825 0.99863 1.20844 0.95834 1.04598 1.02062 1.20848 0.97655 1.01882 1.02978 1.21842 0.90878 1.04178 0.97487 0.92420 0.93109 0.93905 0.87920 0.93381 0.92239 0.90018 0.90290 0.90848 0.90700 0.89369 0.89443 0.82489 0.85119 0.85103 0.82433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 10.15 37.16 0.38 -2.45 16 2 C 0.10 2.16 5.41 -4.04 -0.02 2.14 16 3 N -0.44 -11.03 2.50 -114.81 -0.29 -11.32 16 4 C -0.31 -8.60 8.84 -14.94 -0.13 -8.73 16 5 H 0.09 2.50 7.82 -52.48 -0.41 2.09 16 6 C 0.04 1.03 4.95 -17.47 -0.09 0.94 16 7 N -0.87 -23.49 11.61 55.50 0.64 -22.84 16 8 Si 0.92 20.60 29.59 -169.99 -5.03 15.57 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 C 0.46 11.06 7.59 -10.99 -0.08 10.98 16 13 O -0.58 -16.27 15.89 5.54 0.09 -16.18 16 14 C -0.13 -2.27 4.31 -27.88 -0.12 -2.39 16 15 C -0.11 -1.79 4.83 -26.73 -0.13 -1.92 16 16 C 0.10 1.22 6.09 -4.04 -0.02 1.20 16 17 N -0.44 -5.88 2.75 -117.12 -0.32 -6.21 16 18 C -0.01 -0.19 11.43 -16.75 -0.19 -0.38 16 19 C -0.21 -2.72 10.86 -39.78 -0.43 -3.15 16 20 C -0.21 -2.74 10.86 -39.78 -0.43 -3.17 16 21 C -0.01 -0.18 11.43 -16.75 -0.19 -0.37 16 22 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.67 6.60 -51.93 -0.34 0.33 16 25 H 0.10 2.40 5.76 -51.93 -0.30 2.10 16 26 H 0.05 0.90 6.66 -51.93 -0.35 0.56 16 27 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.08 1.28 7.41 -51.93 -0.38 0.90 16 29 H 0.08 1.17 6.54 -51.93 -0.34 0.83 16 30 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 31 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 35 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 310.50 15.07 4.68 4.68 Total: -1.00 -32.11 310.50 -7.18 -39.28 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.48 Total: 4.33 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -1.47 Total: -7.32 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.04 Total: -40.37 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.09 Total: -16.18 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.11 -7.18 -39.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344189727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.953 kcal (2) G-P(sol) polarization free energy of solvation -32.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds