Wall clock time and date at job start Thu Apr 9 2020 12:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46510 * 109.46836 * 2 1 4 4 C 1.37092 * 119.99756 * 264.76539 * 3 2 1 5 5 H 1.08004 * 119.99799 * 138.84781 * 4 3 2 6 6 C 1.38951 * 120.00480 * 318.85483 * 4 3 2 7 7 N 1.31412 * 119.99537 * 341.82973 * 6 4 3 8 8 Si 1.86797 * 120.00332 * 161.83119 * 6 4 3 9 9 H 1.48505 * 109.46884 * 60.00257 * 8 6 4 10 10 H 1.48500 * 109.47143 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47253 * 300.00221 * 8 6 4 12 12 C 1.34774 * 119.99862 * 84.76770 * 3 2 1 13 13 O 1.21295 * 119.99824 * 179.97438 * 12 3 2 14 14 C 1.50703 * 120.00094 * 0.02562 * 12 3 2 15 15 C 1.53002 * 109.46929 * 179.97438 * 14 12 3 16 16 C 1.53005 * 109.46980 * 179.97438 * 15 14 12 17 17 N 1.46497 * 109.46687 * 179.97438 * 16 15 14 18 18 C 1.36346 * 125.63364 * 90.00975 * 17 16 15 19 19 C 1.34844 * 108.21966 * 179.97438 * 18 17 16 20 20 C 1.40889 * 107.41912 * 0.02562 * 19 18 17 21 21 C 1.34850 * 107.41746 * 359.97438 * 20 19 18 22 22 H 1.09004 * 109.46888 * 60.00396 * 1 2 3 23 23 H 1.09005 * 109.46704 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47760 * 299.99935 * 1 2 3 25 25 H 1.08994 * 109.47241 * 239.99979 * 2 1 3 26 26 H 1.09004 * 109.46888 * 119.99603 * 2 1 3 27 27 H 0.97003 * 119.99527 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.47657 * 59.99549 * 14 12 3 29 29 H 1.08998 * 109.46825 * 299.99696 * 14 12 3 30 30 H 1.08999 * 109.46992 * 59.99752 * 15 14 12 31 31 H 1.08998 * 109.47130 * 299.99522 * 15 14 12 32 32 H 1.09007 * 109.46800 * 60.00030 * 16 15 14 33 33 H 1.08998 * 109.47202 * 299.99972 * 16 15 14 34 34 H 1.08004 * 125.88640 * 359.70329 * 18 17 16 35 35 H 1.08006 * 126.29453 * 179.97438 * 19 18 17 36 36 H 1.08001 * 126.29720 * 180.02562 * 20 19 18 37 37 H 1.07999 * 125.89209 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3488 1.9915 -1.1823 5 1 2.0741 3.0218 -1.3535 6 6 3.0372 1.2843 -2.1605 7 7 3.6791 0.1819 -1.8450 8 14 3.0500 1.9005 -3.9238 9 1 3.6537 3.2565 -3.9699 10 1 3.8492 0.9746 -4.7660 11 1 1.6579 1.9607 -4.4374 12 6 2.1425 2.0521 1.1623 13 8 2.5472 3.1956 1.1624 14 6 1.7797 1.3812 2.4621 15 6 2.0116 2.3538 3.6202 16 6 1.6426 1.6728 4.9397 17 7 1.8653 2.6039 6.0486 18 6 0.9457 3.4772 6.5493 19 6 1.5199 4.1604 7.5602 20 6 2.8425 3.6922 7.6880 21 6 3.0261 2.7403 6.7506 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 4.1593 -0.3120 -2.5280 28 1 2.4017 0.4969 2.6006 29 1 0.7304 1.0871 2.4386 30 1 1.3898 3.2382 3.4818 31 1 3.0610 2.6474 3.6435 32 1 2.2642 0.7881 5.0782 33 1 0.5931 1.3794 4.9162 34 1 -0.0665 3.6033 6.1944 35 1 1.0521 4.9264 8.1610 36 1 3.5747 4.0324 8.4053 37 1 3.9356 2.1821 6.5847 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344189727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:26:56 Heat of formation + Delta-G solvation = -9.540689 kcal Electronic energy + Delta-G solvation = -18006.204739 eV Core-core repulsion = 15169.655104 eV Total energy + Delta-G solvation = -2836.549635 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.93280 -40.46654 -37.01704 -35.79052 -34.03410 -32.08057 -31.11593 -29.60705 -28.15909 -26.31695 -24.01630 -23.14610 -21.30817 -20.79843 -20.49773 -18.76261 -18.27234 -17.55350 -16.99638 -16.46186 -15.98123 -15.42992 -15.29229 -14.69140 -14.54699 -14.40812 -14.02257 -13.64829 -13.56478 -13.20960 -12.97152 -12.91288 -12.79238 -12.74374 -12.70511 -12.50356 -12.22804 -12.08990 -11.90606 -11.63413 -10.87973 -10.35459 -9.47688 -9.39199 -9.01772 -8.34771 -6.11184 1.38281 1.39446 1.42512 1.49633 2.08038 2.14480 2.18925 2.30548 3.00938 3.11382 3.81324 3.87813 4.03206 4.27648 4.30953 4.32980 4.41044 4.43049 4.58236 4.63491 4.69695 4.75643 4.81634 4.89510 5.04383 5.11585 5.26879 5.33540 5.42753 5.45118 5.47334 5.57764 6.14716 6.23596 6.39623 6.56166 6.57912 7.19856 7.49267 8.09971 8.68567 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.040431 B = 0.004271 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.364833 B = 6553.666468 C = 6817.626093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.100 3.900 3 N -0.456 5.456 4 C -0.345 4.345 5 H 0.057 0.943 6 C 0.006 3.994 7 N -0.891 5.891 8 Si 0.979 3.021 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.263 1.263 12 C 0.442 3.558 13 O -0.636 6.636 14 C -0.116 4.116 15 C -0.103 4.103 16 C 0.111 3.889 17 N -0.451 5.451 18 C -0.026 4.026 19 C -0.226 4.226 20 C -0.225 4.225 21 C -0.029 4.029 22 H 0.036 0.964 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.273 0.727 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.178 0.822 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.561 -3.899 12.436 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.023 4.023 3 N -0.175 5.175 4 C -0.474 4.474 5 H 0.075 0.925 6 C -0.197 4.197 7 N -0.528 5.528 8 Si 0.802 3.198 9 H -0.206 1.206 10 H -0.195 1.195 11 H -0.187 1.187 12 C 0.233 3.767 13 O -0.524 6.524 14 C -0.157 4.157 15 C -0.142 4.142 16 C -0.010 4.010 17 N -0.126 5.126 18 C -0.156 4.156 19 C -0.250 4.250 20 C -0.250 4.250 21 C -0.159 4.159 22 H 0.055 0.945 23 H 0.105 0.895 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.195 0.805 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.314 -3.782 12.031 14.103 hybrid contribution 0.456 0.612 -1.117 1.353 sum -5.858 -3.170 10.913 12.786 Atomic orbital electron populations 1.22119 0.95165 1.02587 1.01377 1.21591 0.94073 0.83330 1.03264 1.43778 1.56118 1.13100 1.04515 1.19284 1.36719 0.98035 0.93340 0.92549 1.26108 0.93128 0.96622 1.03819 1.69976 1.29403 1.18134 1.35285 0.85236 0.78906 0.77979 0.77665 1.20592 1.19521 1.18740 1.21494 0.80884 0.87490 0.86878 1.90488 1.52437 1.21432 1.88001 1.21492 1.04611 0.99247 0.90314 1.21494 1.01417 0.98233 0.93051 1.22014 1.05127 0.91274 0.82580 1.44392 1.10897 1.30770 1.26531 1.22268 0.96951 0.96599 0.99828 1.21187 0.96088 1.05152 1.02597 1.21185 0.98211 1.02085 1.03500 1.22241 0.91555 1.04535 0.97617 0.94465 0.89548 0.92167 0.90598 0.90919 0.91755 0.87832 0.86943 0.93074 0.93711 0.87152 0.86623 0.80510 0.83746 0.83856 0.80896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 10.15 71.98 0.73 -4.16 16 2 C 0.10 4.06 5.41 86.38 0.47 4.53 16 3 N -0.46 -22.93 2.50 -635.52 -1.59 -24.52 16 4 C -0.35 -19.70 8.84 84.04 0.74 -18.96 16 5 H 0.06 3.46 7.82 -2.91 -0.02 3.44 16 6 C 0.01 0.32 4.95 84.93 0.42 0.74 16 7 N -0.89 -47.94 11.61 21.66 0.25 -47.69 16 8 Si 0.98 42.54 29.59 68.60 2.03 44.57 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 12 C 0.44 21.41 7.59 87.66 0.67 22.07 16 13 O -0.64 -37.08 15.89 -3.08 -0.05 -37.13 16 14 C -0.12 -3.72 4.31 29.85 0.13 -3.59 16 15 C -0.10 -3.13 4.83 30.60 0.15 -2.98 16 16 C 0.11 2.31 6.09 86.38 0.53 2.84 16 17 N -0.45 -11.13 2.75 -524.47 -1.44 -12.57 16 18 C -0.03 -0.64 11.43 83.21 0.95 0.31 16 19 C -0.23 -5.62 10.86 22.14 0.24 -5.38 16 20 C -0.23 -5.69 10.86 22.14 0.24 -5.45 16 21 C -0.03 -0.73 11.43 83.21 0.95 0.22 16 22 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 24 H 0.06 1.68 6.60 -2.39 -0.02 1.67 16 25 H 0.08 3.50 5.76 -2.39 -0.01 3.49 16 26 H 0.07 2.52 6.66 -2.39 -0.02 2.51 16 27 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 28 H 0.10 2.91 7.41 -2.39 -0.02 2.89 16 29 H 0.11 2.87 6.54 -2.39 -0.02 2.85 16 30 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 31 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 32 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.18 3.38 8.06 -2.91 -0.02 3.35 16 35 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 36 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -72.84 310.50 6.45 -66.39 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 1.04 Total: 20.76 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 6.21 Total: -9.81 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -2.78 Total: -84.78 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.05 Total: -37.13 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -72.84 6.45 -66.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344189727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.846 kcal (2) G-P(sol) polarization free energy of solvation -72.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds