Wall clock time and date at job start Thu Apr 9 2020 12:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47423 * 2 1 4 4 C 1.52998 * 109.47405 * 120.00444 * 2 1 3 5 5 C 1.52999 * 109.46788 * 294.99913 * 4 2 1 6 6 O 1.42903 * 109.47256 * 180.02562 * 5 4 2 7 7 C 1.53010 * 109.47151 * 240.00258 * 2 1 3 8 8 N 1.46498 * 109.46895 * 64.99828 * 7 2 1 9 9 C 1.38818 * 119.99737 * 180.02562 * 8 7 2 10 10 C 1.39800 * 119.58471 * 359.72267 * 9 8 7 11 11 C 1.38604 * 119.48656 * 179.79359 * 10 9 8 12 12 C 1.38383 * 118.68227 * 0.47705 * 11 10 9 13 13 C 1.40556 * 119.15136 * 359.74711 * 12 11 10 14 14 C 1.41319 * 119.78437 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00018 * 0.02965 * 14 13 12 16 16 C 1.40023 * 119.99640 * 180.02562 * 14 13 12 17 17 N 1.30740 * 120.00127 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99877 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46931 * 90.00005 * 18 16 14 20 20 H 1.48493 * 109.47545 * 210.00338 * 18 16 14 21 21 H 1.48504 * 109.47069 * 330.00738 * 18 16 14 22 22 N 1.31957 * 119.58691 * 180.02562 * 9 8 7 23 23 H 1.08996 * 109.46905 * 299.99799 * 1 2 3 24 24 H 1.08997 * 109.47304 * 59.99542 * 1 2 3 25 25 H 1.09002 * 109.46869 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47384 * 174.99756 * 4 2 1 27 27 H 1.08997 * 109.47329 * 54.99499 * 4 2 1 28 28 H 1.08997 * 109.47286 * 59.99783 * 5 4 2 29 29 H 1.09008 * 109.47201 * 299.99563 * 5 4 2 30 30 H 0.96700 * 114.00311 * 180.02562 * 6 5 4 31 31 H 1.08995 * 109.47322 * 184.99918 * 7 2 1 32 32 H 1.08999 * 109.46688 * 305.00075 * 7 2 1 33 33 H 0.97002 * 120.00259 * 359.97438 * 8 7 2 34 34 H 1.07992 * 120.25684 * 0.02562 * 10 9 8 35 35 H 1.07997 * 120.65601 * 180.22827 * 11 10 9 36 36 H 1.08004 * 120.42390 * 179.76870 * 12 11 10 37 37 H 0.97011 * 119.99899 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 0.0688 2.4952 6 8 2.1122 -0.6045 3.6620 7 6 2.0400 -0.7212 -1.2494 8 7 1.6524 0.0354 -2.4424 9 6 2.0058 -0.4270 -3.7027 10 6 2.7367 -1.6126 -3.8230 11 6 3.0848 -2.0747 -5.0826 12 6 2.7035 -1.3369 -6.1895 13 6 1.9738 -0.1501 -6.0030 14 6 1.5780 0.6140 -7.1240 15 1 1.8359 0.2854 -8.1199 16 6 0.8514 1.7973 -6.9434 17 7 0.5396 2.1954 -5.7377 18 14 0.3289 2.8078 -8.4251 19 1 -1.0060 2.3519 -8.8893 20 1 0.2580 4.2419 -8.0462 21 1 1.3192 2.6329 -9.5177 22 7 1.6529 0.2613 -4.7718 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1264 -0.7996 1.2055 27 1 1.6054 -1.7198 1.2951 28 1 0.5490 0.1471 2.5389 29 1 2.0700 1.0674 2.4494 30 1 1.8910 -0.1590 4.4913 31 1 3.1263 -0.7995 -1.2057 32 1 1.6054 -1.7198 -1.2952 33 1 1.1482 0.8591 -2.3518 34 1 3.0246 -2.1662 -2.9416 35 1 3.6459 -2.9902 -5.1976 36 1 2.9630 -1.6689 -7.1839 37 1 0.0365 3.0154 -5.6126 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381363849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:10 Heat of formation + Delta-G solvation = -29.689376 kcal Electronic energy + Delta-G solvation = -17776.117016 eV Core-core repulsion = 14938.693668 eV Total energy + Delta-G solvation = -2837.423348 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.47112 -37.68507 -36.18966 -33.91538 -32.84636 -30.35195 -29.32094 -28.08172 -26.01771 -25.30192 -22.84928 -21.48871 -20.32818 -19.93959 -17.56713 -17.31795 -16.17174 -15.75101 -15.09132 -14.70437 -14.58450 -14.25352 -13.93732 -13.37423 -13.03752 -12.94722 -12.56114 -12.36248 -11.91500 -11.81057 -11.54757 -11.19652 -11.01200 -10.96100 -10.83271 -10.68436 -10.48658 -10.37232 -10.06443 -9.88278 -9.44945 -8.83828 -7.86993 -7.47294 -6.46180 -6.29625 -4.44078 2.90470 3.12589 3.16066 3.27755 3.33299 3.87877 4.00652 4.43614 4.78082 4.81874 4.87940 5.12367 5.15787 5.31020 5.40550 5.64746 5.84765 5.85877 5.93666 6.01133 6.06557 6.18410 6.19999 6.31819 6.42297 6.62852 6.90251 6.93475 6.99069 7.28472 7.40608 7.64118 7.85679 7.96283 8.20562 8.41097 8.73188 8.84125 9.16343 10.28277 10.43942 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.029707 B = 0.004532 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.326851 B = 6177.369389 C = 6987.745318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 H 0.076 0.924 4 C -0.112 4.112 5 C 0.074 3.926 6 O -0.577 6.577 7 C 0.148 3.852 8 N -0.738 5.738 9 C 0.411 3.589 10 C -0.367 4.367 11 C -0.032 4.032 12 C -0.317 4.317 13 C 0.293 3.707 14 C -0.436 4.436 15 H 0.082 0.918 16 C 0.072 3.928 17 N -0.717 5.717 18 Si 0.905 3.095 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.262 1.262 22 N -0.532 5.532 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.377 0.623 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.395 0.605 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 -0.614 12.676 12.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.003 4.003 6 O -0.382 6.382 7 C 0.022 3.978 8 N -0.375 5.375 9 C 0.171 3.829 10 C -0.393 4.393 11 C -0.057 4.057 12 C -0.340 4.340 13 C 0.166 3.834 14 C -0.468 4.468 15 H 0.101 0.899 16 C -0.153 4.153 17 N -0.339 5.339 18 Si 0.729 3.271 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.186 1.186 22 N -0.254 5.254 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.224 0.776 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.230 0.770 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.917 -0.254 12.517 12.553 hybrid contribution -0.153 0.360 -0.273 0.477 sum -1.071 0.106 12.244 12.291 Atomic orbital electron populations 1.21902 0.94690 1.02223 1.01841 1.21264 0.96534 1.00241 0.93755 0.90531 1.21463 1.01994 0.99710 0.91823 1.22278 0.97681 0.94971 0.85385 1.86477 1.81348 1.53928 1.16492 1.21041 0.98543 0.94732 0.83477 1.44133 1.63412 1.28152 1.01798 1.18532 0.89204 0.88787 0.86381 1.20622 1.18884 1.03136 0.96644 1.20596 0.95753 0.96556 0.92753 1.21530 1.13845 1.01746 0.96927 1.18198 0.87001 0.88507 0.89740 1.19573 1.29397 1.04594 0.93205 0.89937 1.26041 0.94947 0.97815 0.96503 1.70160 1.23970 1.17977 1.21780 0.86386 0.79746 0.78861 0.82108 1.19535 1.20284 1.18617 1.68213 1.28292 1.32283 0.96587 0.92932 0.91766 0.92491 0.91000 0.90979 0.93332 0.93700 0.77635 0.93114 0.93046 0.77048 0.89218 0.88984 0.88753 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.82 37.16 0.33 -1.44 16 2 C -0.10 -1.21 2.42 -90.62 -0.22 -1.43 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.11 -1.23 5.05 -26.73 -0.14 -1.37 16 5 C 0.07 0.71 6.80 37.16 0.25 0.96 16 6 O -0.58 -5.75 13.66 -35.23 -0.48 -6.23 16 7 C 0.15 2.33 4.27 -4.04 -0.02 2.32 16 8 N -0.74 -14.90 5.45 -60.39 -0.33 -15.23 16 9 C 0.41 10.24 7.65 -155.32 -1.19 9.05 16 10 C -0.37 -8.70 9.34 -38.86 -0.36 -9.06 16 11 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 12 C -0.32 -8.22 9.83 -38.65 -0.38 -8.60 16 13 C 0.29 8.30 6.55 -85.00 -0.56 7.75 16 14 C -0.44 -11.98 9.14 -37.74 -0.34 -12.33 16 15 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 16 C 0.07 1.86 5.50 -17.35 -0.10 1.76 16 17 N -0.72 -19.23 11.46 55.55 0.64 -18.59 16 18 Si 0.90 18.90 29.56 -169.99 -5.02 13.88 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 22 N -0.53 -14.95 7.89 -10.33 -0.08 -15.03 16 23 H 0.05 0.52 6.56 -51.93 -0.34 0.18 16 24 H 0.06 0.86 7.18 -51.93 -0.37 0.49 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.42 6.56 -51.93 -0.34 0.08 16 29 H 0.04 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.38 1.94 9.12 45.56 0.42 2.36 16 31 H 0.05 0.81 7.91 -51.93 -0.41 0.40 16 32 H 0.05 0.83 7.93 -51.93 -0.41 0.41 16 33 H 0.39 7.90 7.77 -40.82 -0.32 7.59 16 34 H 0.09 1.90 6.68 -52.49 -0.35 1.55 16 35 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.09 2.27 8.06 -52.48 -0.42 1.85 16 37 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 LS Contribution 307.54 15.07 4.63 4.63 Total: -1.00 -31.36 307.54 -8.40 -39.76 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -4.64 Total: 10.36 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -3.12 Total: -13.54 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.23 Total: -48.85 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.48 Total: -6.23 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.36 -8.40 -39.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381363849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.070 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds