Wall clock time and date at job start Thu Apr 9 2020 12:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47423 * 2 1 4 4 C 1.52998 * 109.47405 * 120.00444 * 2 1 3 5 5 C 1.52999 * 109.46788 * 294.99913 * 4 2 1 6 6 O 1.42903 * 109.47256 * 180.02562 * 5 4 2 7 7 C 1.53010 * 109.47151 * 240.00258 * 2 1 3 8 8 N 1.46498 * 109.46895 * 64.99828 * 7 2 1 9 9 C 1.38818 * 119.99737 * 180.02562 * 8 7 2 10 10 C 1.39800 * 119.58471 * 359.72267 * 9 8 7 11 11 C 1.38604 * 119.48656 * 179.79359 * 10 9 8 12 12 C 1.38383 * 118.68227 * 0.47705 * 11 10 9 13 13 C 1.40556 * 119.15136 * 359.74711 * 12 11 10 14 14 C 1.41319 * 119.78437 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00018 * 0.02965 * 14 13 12 16 16 C 1.40023 * 119.99640 * 180.02562 * 14 13 12 17 17 N 1.30740 * 120.00127 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99877 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46931 * 90.00005 * 18 16 14 20 20 H 1.48493 * 109.47545 * 210.00338 * 18 16 14 21 21 H 1.48504 * 109.47069 * 330.00738 * 18 16 14 22 22 N 1.31957 * 119.58691 * 180.02562 * 9 8 7 23 23 H 1.08996 * 109.46905 * 299.99799 * 1 2 3 24 24 H 1.08997 * 109.47304 * 59.99542 * 1 2 3 25 25 H 1.09002 * 109.46869 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47384 * 174.99756 * 4 2 1 27 27 H 1.08997 * 109.47329 * 54.99499 * 4 2 1 28 28 H 1.08997 * 109.47286 * 59.99783 * 5 4 2 29 29 H 1.09008 * 109.47201 * 299.99563 * 5 4 2 30 30 H 0.96700 * 114.00311 * 180.02562 * 6 5 4 31 31 H 1.08995 * 109.47322 * 184.99918 * 7 2 1 32 32 H 1.08999 * 109.46688 * 305.00075 * 7 2 1 33 33 H 0.97002 * 120.00259 * 359.97438 * 8 7 2 34 34 H 1.07992 * 120.25684 * 0.02562 * 10 9 8 35 35 H 1.07997 * 120.65601 * 180.22827 * 11 10 9 36 36 H 1.08004 * 120.42390 * 179.76870 * 12 11 10 37 37 H 0.97011 * 119.99899 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 0.0688 2.4952 6 8 2.1122 -0.6045 3.6620 7 6 2.0400 -0.7212 -1.2494 8 7 1.6524 0.0354 -2.4424 9 6 2.0058 -0.4270 -3.7027 10 6 2.7367 -1.6126 -3.8230 11 6 3.0848 -2.0747 -5.0826 12 6 2.7035 -1.3369 -6.1895 13 6 1.9738 -0.1501 -6.0030 14 6 1.5780 0.6140 -7.1240 15 1 1.8359 0.2854 -8.1199 16 6 0.8514 1.7973 -6.9434 17 7 0.5396 2.1954 -5.7377 18 14 0.3289 2.8078 -8.4251 19 1 -1.0060 2.3519 -8.8893 20 1 0.2580 4.2419 -8.0462 21 1 1.3192 2.6329 -9.5177 22 7 1.6529 0.2613 -4.7718 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1264 -0.7996 1.2055 27 1 1.6054 -1.7198 1.2951 28 1 0.5490 0.1471 2.5389 29 1 2.0700 1.0674 2.4494 30 1 1.8910 -0.1590 4.4913 31 1 3.1263 -0.7995 -1.2057 32 1 1.6054 -1.7198 -1.2952 33 1 1.1482 0.8591 -2.3518 34 1 3.0246 -2.1662 -2.9416 35 1 3.6459 -2.9902 -5.1976 36 1 2.9630 -1.6689 -7.1839 37 1 0.0365 3.0154 -5.6126 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381363849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:09 Heat of formation + Delta-G solvation = -51.057189 kcal Electronic energy + Delta-G solvation = -17777.043593 eV Core-core repulsion = 14938.693668 eV Total energy + Delta-G solvation = -2838.349926 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19599 -38.79235 -37.29029 -35.60291 -34.48210 -32.26854 -30.92362 -29.24108 -27.35044 -27.16772 -23.95806 -23.34604 -22.06410 -21.04008 -19.24740 -18.44582 -17.78179 -16.78234 -16.57055 -16.43383 -16.02696 -15.67466 -15.24922 -14.88527 -14.50508 -14.43506 -13.94466 -13.73484 -13.38141 -13.16766 -12.81198 -12.73092 -12.61552 -12.45656 -12.21154 -11.98445 -11.86766 -11.71135 -11.52918 -11.26359 -10.78710 -10.64721 -9.82927 -9.44400 -8.28043 -8.22261 -6.47534 1.06703 1.34738 1.42119 1.55236 1.59540 2.25872 2.62352 2.93284 3.39635 3.82667 3.86376 4.06564 4.21338 4.29884 4.39189 4.44877 4.56077 4.65536 4.72296 4.78832 4.85749 4.97262 5.00940 5.01283 5.03249 5.10036 5.14844 5.33296 5.40784 5.42554 5.72390 5.97013 6.07841 6.23629 6.56900 6.84704 6.92623 6.96342 7.23460 8.35014 8.52056 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.029707 B = 0.004532 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.326851 B = 6177.369389 C = 6987.745318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 H 0.079 0.921 4 C -0.108 4.108 5 C 0.076 3.924 6 O -0.597 6.597 7 C 0.145 3.855 8 N -0.731 5.731 9 C 0.393 3.607 10 C -0.370 4.370 11 C -0.030 4.030 12 C -0.345 4.345 13 C 0.259 3.741 14 C -0.472 4.472 15 H 0.086 0.914 16 C 0.026 3.974 17 N -0.752 5.752 18 Si 0.987 3.013 19 H -0.264 1.264 20 H -0.268 1.268 21 H -0.257 1.257 22 N -0.565 5.565 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.398 0.602 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.393 0.607 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 -0.424 13.659 13.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 H 0.098 0.902 4 C -0.146 4.146 5 C -0.001 4.001 6 O -0.405 6.405 7 C 0.020 3.980 8 N -0.366 5.366 9 C 0.152 3.848 10 C -0.395 4.395 11 C -0.054 4.054 12 C -0.368 4.368 13 C 0.131 3.869 14 C -0.504 4.504 15 H 0.104 0.896 16 C -0.196 4.196 17 N -0.374 5.374 18 Si 0.807 3.193 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.181 1.181 22 N -0.288 5.288 23 H 0.095 0.905 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.247 0.753 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.228 0.772 34 H 0.134 0.866 35 H 0.146 0.854 36 H 0.120 0.880 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.073 -0.080 13.562 13.605 hybrid contribution -0.064 0.221 -0.431 0.489 sum -1.137 0.142 13.131 13.181 Atomic orbital electron populations 1.21877 0.94223 1.02221 1.02032 1.21136 0.96763 1.00020 0.92581 0.90240 1.21390 1.01585 0.99673 0.91974 1.22229 0.98430 0.94828 0.84640 1.86416 1.81669 1.54823 1.17641 1.21273 0.98668 0.94750 0.83266 1.44304 1.62570 1.28222 1.01551 1.19001 0.89227 0.89279 0.87265 1.20961 1.18051 1.02807 0.97723 1.21005 0.94992 0.97335 0.92099 1.21694 1.14952 1.01963 0.98185 1.18687 0.87954 0.89775 0.90440 1.19939 1.31008 1.06069 0.93378 0.89590 1.26957 0.94329 0.98429 0.99839 1.70251 1.24397 1.18670 1.24069 0.85154 0.79297 0.77085 0.77764 1.18835 1.19233 1.18097 1.68195 1.29668 1.33655 0.97291 0.90474 0.93815 0.92597 0.91497 0.91244 0.92112 0.92797 0.75265 0.93064 0.93057 0.77210 0.86613 0.85368 0.87961 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.82 71.98 0.63 -2.60 16 2 C -0.09 -1.97 2.42 -10.79 -0.03 -2.00 16 3 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 4 C -0.11 -2.17 5.05 30.59 0.15 -2.01 16 5 C 0.08 1.25 6.80 71.98 0.49 1.74 16 6 O -0.60 -10.46 13.66 -148.98 -2.04 -12.50 16 7 C 0.14 4.43 4.27 86.38 0.37 4.80 16 8 N -0.73 -29.55 5.45 -344.98 -1.88 -31.43 16 9 C 0.39 19.77 7.65 133.42 1.02 20.79 16 10 C -0.37 -17.24 9.34 22.74 0.21 -17.03 16 11 C -0.03 -1.41 10.15 22.39 0.23 -1.18 16 12 C -0.34 -18.12 9.83 22.87 0.22 -17.90 16 13 C 0.26 15.10 6.55 40.18 0.26 15.37 16 14 C -0.47 -26.69 9.14 23.46 0.21 -26.48 16 15 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 16 C 0.03 1.37 5.50 85.29 0.47 1.84 16 17 N -0.75 -41.14 11.46 21.84 0.25 -40.88 16 18 Si 0.99 39.03 29.56 68.60 2.03 41.06 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 20 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 22 N -0.57 -32.59 7.89 -186.59 -1.47 -34.06 16 23 H 0.08 1.32 6.56 -2.39 -0.02 1.31 16 24 H 0.04 1.15 7.18 -2.39 -0.02 1.13 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 0.85 6.56 -2.39 -0.02 0.83 16 29 H 0.05 0.79 8.14 -2.38 -0.02 0.78 16 30 H 0.40 3.10 9.12 -74.06 -0.68 2.42 16 31 H 0.05 1.58 7.91 -2.39 -0.02 1.56 16 32 H 0.05 1.59 7.93 -2.39 -0.02 1.57 16 33 H 0.39 15.97 7.77 -92.71 -0.72 15.25 16 34 H 0.12 4.69 6.68 -2.91 -0.02 4.67 16 35 H 0.13 4.94 8.06 -2.91 -0.02 4.91 16 36 H 0.10 5.01 8.06 -2.91 -0.02 4.98 16 37 H 0.28 13.60 8.29 -92.70 -0.77 12.83 16 Total: -1.00 -68.55 307.54 0.83 -67.73 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.32 Total: 34.75 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 4.25 Total: -24.66 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -3.10 Total: -106.38 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -2.04 Total: -12.50 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -68.55 0.83 -67.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381363849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.669 kcal (2) G-P(sol) polarization free energy of solvation -68.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds