Wall clock time and date at job start Thu Apr 9 2020 12:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47173 * 2 1 4 4 H 1.09000 * 109.47254 * 305.11274 * 3 2 1 5 5 C 1.50700 * 109.47461 * 185.11239 * 3 2 1 6 6 H 1.08005 * 119.99498 * 245.45707 * 5 3 2 7 7 C 1.37871 * 119.99922 * 65.45458 * 5 3 2 8 8 N 1.31520 * 119.99751 * 193.26604 * 7 5 3 9 9 Si 1.86794 * 120.00273 * 13.26708 * 7 5 3 10 10 H 1.48498 * 109.47353 * 84.53801 * 9 7 5 11 11 H 1.48500 * 109.47342 * 204.53867 * 9 7 5 12 12 H 1.48498 * 109.47150 * 324.54079 * 9 7 5 13 13 N 1.46502 * 109.47160 * 65.10853 * 3 2 1 14 14 C 1.39354 * 120.00314 * 259.69629 * 13 3 2 15 15 C 1.39589 * 120.07312 * 359.76059 * 14 13 3 16 16 C 1.38355 * 117.96125 * 180.02562 * 15 14 13 17 17 C 1.39588 * 117.96699 * 359.97438 * 16 15 14 18 18 N 1.39358 * 120.07441 * 180.02562 * 17 16 15 19 19 C 1.46502 * 120.00222 * 5.01115 * 18 17 16 20 20 C 1.46504 * 119.99995 * 185.00202 * 18 17 16 21 21 N 1.32278 * 119.84858 * 0.02562 * 17 16 15 22 22 N 1.28343 * 122.18424 * 359.70578 * 21 17 16 23 23 H 1.08997 * 109.47051 * 302.90407 * 1 2 3 24 24 H 1.09002 * 109.47670 * 62.90448 * 1 2 3 25 25 H 1.09006 * 109.46936 * 182.90157 * 1 2 3 26 26 H 1.09008 * 109.46738 * 240.00630 * 2 1 3 27 27 H 1.08991 * 109.47574 * 120.00576 * 2 1 3 28 28 H 0.96999 * 119.99722 * 179.97438 * 8 7 5 29 29 H 0.97006 * 119.99754 * 79.41547 * 13 3 2 30 30 H 1.07993 * 121.01819 * 359.97438 * 15 14 13 31 31 H 1.08007 * 121.01724 * 180.02562 * 16 15 14 32 32 H 1.08997 * 109.47577 * 89.99212 * 19 18 17 33 33 H 1.08998 * 109.46981 * 209.99430 * 19 18 17 34 34 H 1.09005 * 109.46876 * 329.99113 * 19 18 17 35 35 H 1.08993 * 109.46756 * 60.00341 * 20 18 17 36 36 H 1.09000 * 109.47063 * 180.02562 * 20 18 17 37 37 H 1.09002 * 109.46848 * 300.00750 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9821 -0.8406 5 6 3.5417 1.4444 -0.1266 6 1 4.1516 1.8082 0.6871 7 6 4.1367 0.9818 -1.2810 8 7 5.4287 0.7367 -1.3022 9 14 3.1080 0.7031 -2.8151 10 1 2.9691 1.9819 -3.5570 11 1 3.7740 -0.3021 -3.6819 12 1 1.7632 0.2080 -2.4261 13 7 1.6547 2.0967 1.2529 14 6 0.5523 2.9487 1.2839 15 6 -0.1829 3.1838 0.1208 16 6 -1.2686 4.0376 0.2011 17 6 -1.5610 4.6100 1.4402 18 7 -2.6449 5.4760 1.5711 19 6 -3.5437 5.7013 0.4363 20 6 -2.8857 6.1610 2.8435 21 7 -0.8069 4.3284 2.4899 22 7 0.1972 3.5325 2.4165 23 1 -0.3633 0.5583 0.8628 24 1 -0.3634 0.4681 -0.9149 25 1 -0.3633 -1.0264 0.0520 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 5.8473 0.4109 -2.1143 29 1 2.1645 1.9336 2.0620 30 1 0.0880 2.7142 -0.8132 31 1 -1.8719 4.2540 -0.6682 32 1 -4.3549 4.9739 0.4653 33 1 -3.9566 6.7084 0.4943 34 1 -2.9883 5.5894 -0.4949 35 1 -2.0232 6.7792 3.0922 36 1 -3.7712 6.7905 2.7553 37 1 -3.0422 5.4224 3.6298 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:41 Heat of formation + Delta-G solvation = 79.491227 kcal Electronic energy + Delta-G solvation = -18436.860340 eV Core-core repulsion = 15636.464170 eV Total energy + Delta-G solvation = -2800.396171 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46944 -37.33590 -36.13325 -32.95088 -32.22452 -31.79804 -29.53267 -28.28870 -27.23328 -24.97445 -23.57214 -22.77798 -21.73112 -19.88394 -18.04996 -17.12525 -16.72409 -16.06884 -15.36360 -15.21690 -14.51406 -14.20511 -14.05247 -13.58784 -13.30356 -13.03581 -12.87581 -12.59887 -12.33255 -12.01369 -11.95590 -11.85598 -11.28080 -11.10918 -10.90944 -10.81338 -10.44364 -10.02809 -9.85453 -9.58400 -9.39842 -8.93849 -8.61225 -8.35013 -6.66436 -6.26495 -4.25425 1.33170 1.95009 3.03876 3.15750 3.22914 3.26975 3.98537 4.25132 4.26315 4.85031 4.91611 4.97161 5.03797 5.20211 5.29019 5.34172 5.47431 5.56374 5.67884 5.80988 5.85484 5.87109 5.94405 6.06546 6.18123 6.37163 6.40402 6.53874 6.72284 6.84306 7.16479 7.21094 7.41551 7.44937 7.82990 8.34858 8.51834 8.80399 9.34624 9.54848 10.86110 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.034007 B = 0.005546 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.171661 B = 5047.533698 C = 5237.559358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.142 4.142 3 C 0.253 3.747 4 H 0.037 0.963 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.082 3.918 8 N -0.885 5.885 9 Si 0.857 3.143 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.247 1.247 13 N -0.688 5.688 14 C 0.322 3.678 15 C -0.141 4.141 16 C -0.137 4.137 17 C 0.270 3.730 18 N -0.624 5.624 19 C 0.102 3.898 20 C 0.112 3.888 21 N -0.266 5.266 22 N -0.296 5.296 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.267 0.733 29 H 0.403 0.597 30 H 0.146 0.854 31 H 0.138 0.862 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.764 6.244 0.619 17.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.181 4.181 3 C 0.148 3.852 4 H 0.055 0.945 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.122 4.122 8 N -0.521 5.521 9 Si 0.684 3.316 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.172 1.172 13 N -0.320 5.320 14 C 0.076 3.924 15 C -0.176 4.176 16 C -0.170 4.170 17 C 0.027 3.973 18 N -0.346 5.346 19 C -0.042 4.042 20 C -0.031 4.031 21 N -0.113 5.113 22 N -0.147 5.147 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.238 0.762 30 H 0.164 0.836 31 H 0.156 0.844 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.336 6.386 1.941 17.647 hybrid contribution -0.451 -0.449 -2.265 2.353 sum -16.787 5.937 -0.324 17.809 Atomic orbital electron populations 1.21881 0.98131 1.00210 1.00668 1.22440 0.93277 1.00070 1.02287 1.19078 0.95912 0.88336 0.81860 0.94549 1.21060 0.88687 1.44108 1.03639 0.90157 1.24821 0.94827 0.94031 0.98547 1.69931 1.10498 1.43338 1.28359 0.87355 0.82006 0.78657 0.83628 1.20128 1.21037 1.17159 1.44764 1.27199 1.46408 1.13585 1.20080 0.89821 0.91503 0.90997 1.21873 0.95807 1.00248 0.99633 1.21630 0.99025 0.99059 0.97265 1.19661 0.91543 0.94387 0.91676 1.45731 1.27615 1.48267 1.13020 1.21601 0.92879 1.00795 0.88930 1.21398 1.00326 0.96275 0.85108 1.72558 1.02224 1.11862 1.24699 1.72722 1.10873 1.09283 1.21803 0.93323 0.93807 0.93989 0.91264 0.92125 0.92287 0.76193 0.83617 0.84391 0.93651 0.91472 0.91569 0.92979 0.91748 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.82 37.16 0.33 -2.29 16 2 C -0.14 -2.86 4.94 -26.73 -0.13 -2.99 16 3 C 0.25 5.51 1.71 -69.08 -0.12 5.40 16 4 H 0.04 0.80 4.45 -51.93 -0.23 0.57 16 5 C -0.54 -14.10 9.23 -34.44 -0.32 -14.42 16 6 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 7 C 0.08 2.20 5.36 -17.82 -0.10 2.11 16 8 N -0.89 -25.63 13.96 55.43 0.77 -24.86 16 9 Si 0.86 19.43 25.86 -169.99 -4.40 15.03 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.25 -5.11 5.32 56.52 0.30 -4.81 16 13 N -0.69 -14.07 4.80 -54.86 -0.26 -14.34 16 14 C 0.32 6.31 6.68 -154.61 -1.03 5.28 16 15 C -0.14 -2.45 8.23 -39.03 -0.32 -2.77 16 16 C -0.14 -2.07 9.34 -39.03 -0.36 -2.43 16 17 C 0.27 4.37 7.46 -154.61 -1.15 3.21 16 18 N -0.62 -7.91 3.40 -189.43 -0.64 -8.55 16 19 C 0.10 0.88 10.27 59.85 0.61 1.50 16 20 C 0.11 1.22 10.22 59.85 0.61 1.83 16 21 N -0.27 -5.03 10.74 31.28 0.34 -4.70 16 22 N -0.30 -6.02 11.52 31.28 0.36 -5.66 16 23 H 0.05 0.86 6.51 -51.93 -0.34 0.52 16 24 H 0.04 0.71 7.77 -51.93 -0.40 0.31 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.45 4.70 -51.92 -0.24 1.21 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.40 8.17 8.88 -40.82 -0.36 7.80 16 30 H 0.15 2.44 5.52 -52.49 -0.29 2.15 16 31 H 0.14 1.59 6.14 -52.48 -0.32 1.26 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.44 7.92 -51.93 -0.41 0.03 16 34 H 0.07 0.54 6.03 -51.93 -0.31 0.22 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.49 7.79 -51.93 -0.40 0.09 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 294.85 15.07 4.44 4.44 Total: -1.00 -30.18 294.85 -6.46 -36.64 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.09 Total: 7.57 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -1.98 Total: -5.59 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.56 Total: -58.10 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.40 Total: 15.03 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.18 -6.46 -36.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.131 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds