Wall clock time and date at job start Thu Apr 9 2020 12:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46897 * 2 1 4 4 C 1.52994 * 109.47452 * 120.00055 * 2 1 3 5 5 C 1.53001 * 109.47367 * 185.00275 * 4 2 1 6 6 C 1.50697 * 109.46995 * 180.02562 * 5 4 2 7 7 H 1.07991 * 120.00449 * 359.72153 * 6 5 4 8 8 C 1.37885 * 119.99686 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99913 * 359.72095 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 179.72528 * 8 6 5 11 11 H 1.48493 * 109.47326 * 90.00142 * 10 8 6 12 12 H 1.48506 * 109.46545 * 209.99892 * 10 8 6 13 13 H 1.48498 * 109.47210 * 329.99603 * 10 8 6 14 14 N 1.46501 * 109.46911 * 240.00152 * 2 1 3 15 15 C 1.38309 * 119.99826 * 84.99891 * 14 2 1 16 16 C 1.41144 * 120.53963 * 359.71973 * 15 14 2 17 17 C 1.34924 * 119.76934 * 179.76140 * 16 15 14 18 18 N 1.35961 * 120.89919 * 0.52476 * 17 16 15 19 19 C 1.46494 * 119.43792 * 179.70872 * 18 17 16 20 20 C 1.34586 * 121.12731 * 359.72566 * 18 17 16 21 21 O 1.22140 * 119.91192 * 179.97438 * 20 18 17 22 22 C 1.38554 * 120.53749 * 179.97438 * 15 14 2 23 23 H 1.08994 * 109.47486 * 59.99898 * 1 2 3 24 24 H 1.09007 * 109.46897 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47060 * 299.99569 * 1 2 3 26 26 H 1.08998 * 109.47353 * 65.00053 * 4 2 1 27 27 H 1.09006 * 109.47395 * 305.00309 * 4 2 1 28 28 H 1.08998 * 109.47065 * 59.99602 * 5 4 2 29 29 H 1.09001 * 109.46892 * 299.99866 * 5 4 2 30 30 H 0.97000 * 119.99651 * 180.02562 * 9 8 6 31 31 H 0.96995 * 120.00500 * 264.99246 * 14 2 1 32 32 H 1.08004 * 120.11496 * 0.02562 * 16 15 14 33 33 H 1.07994 * 119.55121 * 180.25183 * 17 16 15 34 34 H 1.08997 * 109.47315 * 270.02101 * 19 18 17 35 35 H 1.09006 * 109.47422 * 30.01933 * 19 18 17 36 36 H 1.09002 * 109.47630 * 150.01823 * 19 18 17 37 37 H 1.08002 * 120.44988 * 359.94956 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 6 4.0673 -1.3241 2.5437 7 1 3.3686 -1.8011 3.2150 8 6 5.4187 -1.3612 2.8149 9 7 6.2696 -0.7808 1.9971 10 14 6.0408 -2.2359 4.3437 11 1 6.3190 -3.6585 4.0215 12 1 7.2881 -1.5820 4.8149 13 1 5.0100 -2.1623 5.4101 14 7 2.0183 -0.6906 -1.1962 15 6 2.1503 -0.0006 -2.3876 16 6 1.8124 1.3676 -2.4652 17 6 1.9518 2.0268 -3.6342 18 7 2.4047 1.3886 -4.7459 19 6 2.5377 2.1339 -6.0001 20 6 2.7326 0.0837 -4.7141 21 8 3.1367 -0.4677 -5.7262 22 6 2.6115 -0.6425 -3.5255 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.7518 -1.7715 1.2055 27 1 1.6055 -0.2618 2.1370 28 1 3.8532 0.4371 1.3572 29 1 3.9995 -1.0727 0.4259 30 1 7.2204 -0.8073 2.1878 31 1 2.2491 -1.6317 -1.1527 32 1 1.4475 1.8861 -1.5909 33 1 1.6960 3.0746 -3.6886 34 1 1.6055 2.0702 -6.5613 35 1 2.7589 3.1784 -5.7804 36 1 3.3479 1.7078 -6.5919 37 1 2.8741 -1.6896 -3.4948 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:26:24 Heat of formation + Delta-G solvation = -18.567638 kcal Electronic energy + Delta-G solvation = -17975.846522 eV Core-core repulsion = 15138.905449 eV Total energy + Delta-G solvation = -2836.941073 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.94102 -38.05744 -36.24615 -34.40973 -32.83513 -30.91806 -29.77751 -28.87473 -26.71066 -25.18860 -23.66681 -22.35896 -21.21921 -20.15447 -17.56249 -17.17417 -16.64588 -16.27208 -15.76516 -15.21596 -14.84414 -14.51704 -13.78876 -13.54039 -13.16359 -13.12156 -12.96950 -12.61243 -12.52224 -12.32569 -11.90839 -11.59616 -11.44854 -11.24267 -10.97517 -10.77902 -10.51885 -10.42076 -9.93726 -9.64367 -9.39869 -9.11765 -8.39765 -8.09118 -7.38716 -6.03877 -4.07475 1.24313 2.27951 2.90122 3.29066 3.35856 3.38120 3.62690 4.03556 4.41898 4.55675 4.80736 5.15856 5.20890 5.25941 5.31962 5.35580 5.41635 5.45790 5.58778 5.65762 5.84343 5.98665 6.04002 6.21283 6.27211 6.36000 6.48415 6.57378 6.62708 6.95620 7.39203 7.50939 7.61478 7.73617 7.87981 7.94905 8.35704 8.47363 8.99872 9.57334 11.06941 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027313 B = 0.004655 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.905582 B = 6013.108401 C = 6567.202731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.136 3.864 3 H 0.080 0.920 4 C -0.120 4.120 5 C 0.023 3.977 6 C -0.526 4.526 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.892 5.892 10 Si 0.891 3.109 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.700 5.700 15 C 0.311 3.689 16 C -0.254 4.254 17 C 0.150 3.850 18 N -0.519 5.519 19 C 0.064 3.936 20 C 0.535 3.465 21 O -0.580 6.580 22 C -0.374 4.374 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.014 0.986 29 H 0.020 0.980 30 H 0.261 0.739 31 H 0.407 0.593 32 H 0.146 0.854 33 H 0.159 0.841 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.962 8.090 -9.188 17.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.031 3.969 3 H 0.098 0.902 4 C -0.158 4.158 5 C -0.014 4.014 6 C -0.564 4.564 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.531 5.531 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 N -0.323 5.323 15 C 0.195 3.805 16 C -0.280 4.280 17 C 0.022 3.978 18 N -0.232 5.232 19 C -0.078 4.078 20 C 0.341 3.659 21 O -0.466 6.466 22 C -0.404 4.404 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.033 0.967 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.243 0.757 32 H 0.163 0.837 33 H 0.177 0.823 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.591 7.905 -9.676 17.043 hybrid contribution 0.575 -0.758 1.057 1.422 sum -11.016 7.147 -8.619 15.708 Atomic orbital electron populations 1.22303 0.96267 1.02227 1.01651 1.21324 0.92667 0.97505 0.85404 0.90207 1.21972 1.00776 0.99064 0.93992 1.19093 0.87928 0.97209 0.97203 1.21233 0.91990 1.34797 1.08392 0.92745 1.25022 0.97104 0.95528 0.96665 1.69966 1.02414 1.43876 1.36866 0.86617 0.78360 0.79789 0.83371 1.20654 1.21210 1.19893 1.44906 1.67500 1.13057 1.06841 1.18230 0.85644 0.90504 0.86129 1.20467 1.14781 0.94142 0.98620 1.21559 0.92626 0.97858 0.85720 1.45379 1.55723 1.11734 1.10363 1.21997 1.03850 0.96142 0.85780 1.16447 0.79359 0.79878 0.90185 1.90897 1.51450 1.68008 1.36284 1.21218 1.25293 1.02232 0.91679 0.92823 0.92487 0.91713 0.92698 0.91617 0.96746 0.96213 0.92945 0.75674 0.83668 0.82329 0.91388 0.90331 0.89169 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 9.44 37.16 0.35 -1.58 16 2 C 0.14 1.97 2.27 -67.93 -0.15 1.81 16 3 H 0.08 1.16 6.51 -51.92 -0.34 0.82 16 4 C -0.12 -2.18 4.69 -26.73 -0.13 -2.30 16 5 C 0.02 0.55 4.86 -27.88 -0.14 0.42 16 6 C -0.53 -14.40 9.11 -34.44 -0.31 -14.72 16 7 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 10 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 14 N -0.70 -10.58 4.65 -52.01 -0.24 -10.82 16 15 C 0.31 4.68 6.66 -83.72 -0.56 4.12 16 16 C -0.25 -3.08 8.79 -39.66 -0.35 -3.43 16 17 C 0.15 1.54 10.26 -16.90 -0.17 1.37 16 18 N -0.52 -6.69 2.99 -127.51 -0.38 -7.07 16 19 C 0.06 0.60 10.34 59.84 0.62 1.22 16 20 C 0.53 9.30 7.38 -15.76 -0.12 9.18 16 21 O -0.58 -12.02 16.61 4.79 0.08 -11.94 16 22 C -0.37 -6.36 9.88 -38.88 -0.38 -6.75 16 23 H 0.05 0.57 7.71 -51.93 -0.40 0.17 16 24 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.02 0.51 7.75 -51.93 -0.40 0.11 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 31 H 0.41 6.26 8.61 -40.82 -0.35 5.91 16 32 H 0.15 1.50 6.23 -52.48 -0.33 1.17 16 33 H 0.16 0.90 8.03 -52.49 -0.42 0.48 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.46 8.00 -51.93 -0.42 0.05 16 36 H 0.09 0.99 7.37 -51.93 -0.38 0.61 16 37 H 0.14 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 310.71 15.07 4.68 4.68 Total: -1.00 -34.12 310.71 -7.12 -41.24 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.54 Total: 2.53 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -1.44 Total: -9.10 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.11 Total: -43.77 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.12 -7.12 -41.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.671 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds