Wall clock time and date at job start Thu Apr 9 2020 12:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00144 * 2 1 4 4 H 1.48502 * 109.47331 * 179.72317 * 3 2 1 5 5 H 1.48510 * 109.47131 * 299.72273 * 3 2 1 6 6 H 1.48500 * 109.47511 * 59.72151 * 3 2 1 7 7 C 1.37876 * 120.00016 * 179.71974 * 2 1 3 8 8 H 1.07998 * 120.00489 * 180.27476 * 7 2 1 9 9 C 1.50703 * 119.99890 * 0.27955 * 7 2 1 10 10 N 1.46906 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99728 * 185.14804 * 10 9 7 12 12 H 1.08998 * 109.43457 * 324.20700 * 11 10 9 13 13 C 1.53065 * 109.43742 * 84.12703 * 11 10 9 14 14 C 1.53408 * 108.29346 * 168.26621 * 13 11 10 15 15 O 1.42830 * 108.36580 * 295.25089 * 14 13 11 16 16 C 1.35894 * 117.86571 * 49.14298 * 15 14 13 17 17 C 1.39126 * 118.47154 * 162.98510 * 16 15 14 18 18 C 1.37972 * 120.25550 * 179.82031 * 17 16 15 19 19 C 1.38475 * 119.92725 * 359.97438 * 18 17 16 20 20 F 1.35104 * 120.03424 * 180.02562 * 19 18 17 21 21 C 1.38287 * 119.93474 * 0.08271 * 19 18 17 22 22 C 1.38293 * 121.77803 * 342.89277 * 16 15 14 23 23 H 0.96995 * 119.99671 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47234 * 299.99659 * 9 7 2 25 25 H 1.08996 * 109.47588 * 60.00046 * 9 7 2 26 26 H 1.00901 * 110.99896 * 61.19286 * 10 9 7 27 27 H 1.09002 * 109.69635 * 287.96920 * 13 11 10 28 28 H 1.09010 * 109.70075 * 48.52414 * 13 11 10 29 29 H 1.09007 * 109.68251 * 54.96250 * 14 13 11 30 30 H 1.08998 * 109.68552 * 175.48802 * 14 13 11 31 31 H 1.08001 * 119.87155 * 359.84100 * 17 16 15 32 32 H 1.07995 * 120.03299 * 180.02562 * 18 17 16 33 33 H 1.07997 * 119.85612 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0068 5 1 1.8955 2.3935 -1.2159 6 1 1.8854 2.3994 1.2091 7 6 2.0046 -1.1940 0.0058 8 1 3.0845 -1.1941 0.0103 9 6 1.2510 -2.4991 0.0059 10 7 2.2057 -3.6157 0.0132 11 6 1.5101 -4.9038 -0.1096 12 1 0.5627 -4.8570 0.4275 13 6 1.2438 -5.2000 -1.5875 14 6 0.7923 -6.6608 -1.7121 15 8 1.8766 -7.5022 -1.3165 16 6 2.5022 -7.2225 -0.1430 17 6 3.2981 -8.2063 0.4352 18 6 3.9531 -7.9606 1.6243 19 6 3.8191 -6.7302 2.2455 20 9 4.4600 -6.4871 3.4097 21 6 3.0277 -5.7510 1.6735 22 6 2.3674 -5.9951 0.4797 23 1 -0.4849 -0.8400 0.0004 24 1 0.6206 -2.5547 0.8934 25 1 0.6281 -2.5591 -0.8866 26 1 2.7818 -3.5934 0.8413 27 1 0.4597 -4.5401 -1.9590 28 1 2.1565 -5.0464 -2.1633 29 1 -0.0650 -6.8369 -1.0623 30 1 0.5195 -6.8739 -2.7456 31 1 3.4038 -9.1660 -0.0489 32 1 4.5704 -8.7267 2.0698 33 1 2.9244 -4.7918 2.1588 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572751663.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:26:20 Heat of formation + Delta-G solvation = -63.725482 kcal Electronic energy + Delta-G solvation = -18084.705909 eV Core-core repulsion = 15024.627677 eV Total energy + Delta-G solvation = -3060.078231 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.77800 -40.71900 -37.34055 -36.29840 -33.32797 -31.12693 -30.69119 -29.77073 -26.30523 -24.31918 -23.67068 -22.60006 -21.59023 -19.91319 -18.08173 -17.44927 -16.97370 -16.66974 -15.60819 -15.20824 -14.96206 -14.75747 -14.34147 -14.13607 -13.72297 -13.49669 -13.33998 -12.97113 -12.88340 -12.06198 -11.97276 -11.78840 -11.20683 -10.97950 -10.77206 -10.74339 -10.62445 -10.30340 -10.12864 -9.08335 -8.71620 -8.46989 -8.09792 -7.54996 -6.43839 -4.13433 1.10800 1.19167 3.22144 3.42364 3.45807 3.52794 3.60459 4.26381 4.46892 4.58715 4.64381 4.75591 4.85798 4.98680 5.17850 5.30302 5.32700 5.38420 5.48949 5.59536 5.72134 5.80172 5.96405 6.09436 6.16897 6.29262 6.40784 6.68648 6.81073 6.98756 7.35908 7.64018 8.03406 8.28638 8.51347 8.80154 9.58075 10.95879 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.005782 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.882971 B = 4841.716641 C = 5781.822159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.079 2.921 4 H -0.288 1.288 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.595 4.595 8 H 0.058 0.942 9 C 0.183 3.817 10 N -0.672 5.672 11 C 0.124 3.876 12 H 0.052 0.948 13 C -0.146 4.146 14 C 0.062 3.938 15 O -0.315 6.315 16 C 0.129 3.871 17 C -0.124 4.124 18 C -0.124 4.124 19 C 0.065 3.935 20 F -0.142 7.142 21 C -0.114 4.114 22 C -0.119 4.119 23 H 0.267 0.733 24 H -0.023 1.023 25 H 0.021 0.979 26 H 0.335 0.665 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.667 -16.318 0.398 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.188 4.188 3 Si 0.907 3.093 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.633 4.633 8 H 0.076 0.924 9 C 0.056 3.944 10 N -0.305 5.305 11 C 0.014 3.986 12 H 0.070 0.930 13 C -0.185 4.185 14 C -0.014 4.014 15 O -0.229 6.229 16 C 0.083 3.917 17 C -0.143 4.143 18 C -0.143 4.143 19 C 0.046 3.954 20 F -0.121 7.121 21 C -0.134 4.134 22 C -0.120 4.120 23 H 0.077 0.923 24 H -0.005 1.005 25 H 0.039 0.961 26 H 0.155 0.845 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.128 0.872 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.665 -14.735 -0.367 15.188 hybrid contribution -0.246 -1.414 1.167 1.850 sum 3.418 -16.149 0.800 16.526 Atomic orbital electron populations 1.70752 1.06898 1.30413 1.46961 1.25881 0.96461 1.02805 0.93699 0.83405 0.74483 0.74478 0.76952 1.21393 1.21275 1.21369 1.22027 0.94992 0.91004 1.55290 0.92384 1.19760 0.91062 0.88936 0.94664 1.60737 1.24236 0.99924 1.45603 1.20325 0.94420 0.88897 0.94935 0.93039 1.22247 1.03867 0.95215 0.97128 1.23073 0.87232 0.89828 1.01233 1.85957 1.46906 1.54967 1.35087 1.18649 0.94557 0.92299 0.86150 1.20370 0.99534 0.98918 0.95485 1.20845 1.01444 0.96101 0.95923 1.17447 0.98051 0.95266 0.84636 1.91486 1.80002 1.94876 1.45713 1.20926 0.97160 0.99441 0.95834 1.19903 1.01552 0.94670 0.95897 0.92312 1.00503 0.96122 0.84547 0.89612 0.89426 0.91912 0.87234 0.84319 0.84299 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.62 13.65 55.43 0.76 -26.87 16 2 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.08 25.36 29.90 -169.99 -5.08 20.28 16 4 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.59 -16.87 9.36 -34.44 -0.32 -17.19 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.18 4.63 4.53 -4.97 -0.02 4.61 16 10 N -0.67 -14.29 6.26 -109.14 -0.68 -14.97 16 11 C 0.12 2.18 2.65 -68.79 -0.18 1.99 16 12 H 0.05 0.92 7.87 -51.93 -0.41 0.52 16 13 C -0.15 -2.26 5.57 -26.49 -0.15 -2.41 16 14 C 0.06 0.75 7.03 37.37 0.26 1.02 16 15 O -0.32 -4.37 10.27 -19.41 -0.20 -4.57 16 16 C 0.13 1.87 6.47 -39.23 -0.25 1.61 16 17 C -0.12 -1.52 9.93 -39.35 -0.39 -1.91 16 18 C -0.12 -1.48 10.02 -39.59 -0.40 -1.88 16 19 C 0.07 0.93 7.30 -39.48 -0.29 0.64 16 20 F -0.14 -2.07 17.27 2.25 0.04 -2.03 16 21 C -0.11 -1.77 8.91 -39.43 -0.35 -2.12 16 22 C -0.12 -1.88 5.56 -104.44 -0.58 -2.46 16 23 H 0.27 8.00 7.22 -40.82 -0.29 7.70 16 24 H -0.02 -0.60 8.00 -51.93 -0.42 -1.02 16 25 H 0.02 0.55 7.38 -51.93 -0.38 0.16 16 26 H 0.33 6.92 6.24 -39.29 -0.25 6.67 16 27 H 0.09 1.34 7.68 -51.93 -0.40 0.94 16 28 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.14 2.17 6.60 -52.49 -0.35 1.82 16 LS Contribution 280.81 15.07 4.23 4.23 Total: -1.00 -30.87 280.81 -7.52 -38.39 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -3.81 Total: 3.29 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -2.77 Total: -17.76 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.07 Total: -41.84 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.20 Total: -4.57 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.87 -7.52 -38.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572751663.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.338 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds