Wall clock time and date at job start Thu Apr 9 2020 12:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47419 * 328.82444 * 3 2 1 5 5 C 1.37101 * 120.00354 * 270.27885 * 4 3 2 6 6 H 1.08000 * 120.00242 * 196.16946 * 5 4 3 7 7 C 1.38959 * 119.99455 * 16.16932 * 5 4 3 8 8 N 1.31409 * 120.00205 * 10.64053 * 7 5 4 9 9 Si 1.86800 * 119.99577 * 190.64696 * 7 5 4 10 10 H 1.48496 * 109.47370 * 90.00047 * 9 7 5 11 11 H 1.48500 * 109.47098 * 209.99925 * 9 7 5 12 12 H 1.48497 * 109.47191 * 329.99534 * 9 7 5 13 13 C 1.34779 * 120.00052 * 89.99580 * 4 3 2 14 14 O 1.21290 * 120.00138 * 354.66313 * 13 4 3 15 15 C 1.50705 * 120.00061 * 174.66343 * 13 4 3 16 16 O 1.42898 * 109.47167 * 184.75107 * 15 13 4 17 17 C 1.42895 * 114.00238 * 174.42094 * 16 15 13 18 18 C 1.52998 * 112.84809 * 59.98605 * 17 16 15 19 19 C 1.53776 * 113.61425 * 288.79193 * 17 16 15 20 20 C 1.53963 * 87.02036 * 220.04596 * 19 17 16 21 21 C 1.53779 * 113.61677 * 191.17940 * 17 16 15 22 22 H 4.40641 * 5.51433 * 180.02562 * 4 1 2 23 23 H 1.08997 * 109.46831 * 208.82649 * 3 2 1 24 24 H 1.08998 * 109.47286 * 88.82131 * 3 2 1 25 25 H 0.97000 * 120.00278 * 184.98968 * 8 7 5 26 26 H 1.09003 * 109.46996 * 304.75152 * 15 13 4 27 27 H 1.08998 * 109.46904 * 64.74968 * 15 13 4 28 28 H 1.08994 * 109.47507 * 52.12730 * 18 17 16 29 29 H 1.08998 * 109.47362 * 172.12885 * 18 17 16 30 30 H 1.09006 * 109.47001 * 292.12680 * 18 17 16 31 31 H 1.09003 * 113.61600 * 334.56383 * 19 17 16 32 32 H 1.09005 * 113.61962 * 105.46875 * 19 17 16 33 33 H 1.08993 * 113.53102 * 270.81081 * 20 19 17 34 34 H 1.08997 * 113.74241 * 139.93987 * 20 19 17 35 35 H 1.09000 * 113.61897 * 254.52959 * 21 17 16 36 36 H 1.09005 * 113.61394 * 25.43849 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1808 0.7150 5 6 3.3580 -1.1208 2.0664 6 1 3.9532 -1.8814 2.5498 7 6 2.8183 -0.0813 2.8141 8 7 1.9290 0.7226 2.2757 9 14 3.3571 0.1735 4.5844 10 1 4.5273 1.0870 4.6191 11 1 2.2405 0.7699 5.3607 12 1 3.7317 -1.1338 5.1809 13 6 3.3600 -2.3286 0.0452 14 8 3.0670 -2.4132 -1.1287 15 6 3.9758 -3.5068 0.7550 16 8 4.2144 -4.5571 -0.1841 17 6 4.9135 -5.6774 0.3619 18 6 4.1651 -6.3369 1.5219 19 6 6.3932 -5.3909 0.6670 20 6 6.6944 -6.8009 0.1270 21 6 5.4045 -6.6747 -0.7007 22 1 -1.0498 -0.0004 0.0000 23 1 3.0089 0.9011 0.4955 24 1 3.0094 -0.0203 -1.0274 25 1 1.6060 1.4907 2.7722 26 1 4.9193 -3.2047 1.2096 27 1 3.2957 -3.8600 1.5301 28 1 3.1441 -6.5625 1.2142 29 1 4.6720 -7.2598 1.8035 30 1 4.1459 -5.6581 2.3746 31 1 6.8174 -4.5911 0.0599 32 1 6.6055 -5.2749 1.7299 33 1 6.6493 -7.5779 0.8900 34 1 7.5986 -6.8548 -0.4792 35 1 4.8195 -7.5936 -0.7405 36 1 5.5578 -6.2265 -1.6825 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798805226.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:26:42 Heat of formation + Delta-G solvation = 10.461586 kcal Electronic energy + Delta-G solvation = -18691.428589 eV Core-core repulsion = 15758.027655 eV Total energy + Delta-G solvation = -2933.400934 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.71321 -38.47124 -35.60677 -34.76457 -31.78896 -31.41064 -28.98006 -28.01960 -26.00093 -25.50572 -24.27538 -22.93646 -19.31624 -18.62406 -17.81351 -16.91748 -16.56396 -15.74340 -15.30403 -14.76563 -14.65290 -14.32182 -13.76666 -13.72941 -13.17483 -12.73100 -12.32788 -12.23058 -12.01657 -11.89248 -11.58728 -11.38942 -11.18749 -11.10605 -10.88492 -10.62523 -10.57749 -10.48055 -9.99070 -9.47005 -9.21861 -9.04740 -8.60989 -8.34677 -7.94915 -6.33588 -4.02185 3.06713 3.15595 3.18504 3.63830 3.79795 4.07519 4.24316 4.40786 4.64761 4.65791 4.85002 4.87135 4.99638 5.23485 5.44441 5.55442 5.73749 5.78201 5.80548 5.87381 5.90000 5.91468 6.04037 6.06414 6.11302 6.21913 6.32407 6.50132 6.71595 6.99251 7.26727 7.27833 7.63703 7.70306 8.28906 8.99234 9.10305 9.40525 9.80819 10.60111 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.022637 B = 0.006614 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.612715 B = 4232.490236 C = 5088.644421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.085 4.085 3 C 0.246 3.754 4 N -0.443 5.443 5 C -0.341 4.341 6 H 0.099 0.901 7 C 0.036 3.964 8 N -0.859 5.859 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.464 3.536 14 O -0.584 6.584 15 C 0.065 3.935 16 O -0.349 6.349 17 C 0.083 3.917 18 C -0.159 4.159 19 C -0.164 4.164 20 C -0.139 4.139 21 C -0.119 4.119 22 H 0.195 0.805 23 H 0.111 0.889 24 H 0.064 0.936 25 H 0.270 0.730 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.630 -8.799 1.248 11.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.087 4.087 3 C 0.124 3.876 4 N -0.163 5.163 5 C -0.468 4.468 6 H 0.117 0.883 7 C -0.169 4.169 8 N -0.496 5.496 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.252 3.748 14 O -0.468 6.468 15 C -0.014 4.014 16 O -0.268 6.268 17 C 0.043 3.957 18 C -0.217 4.217 19 C -0.202 4.202 20 C -0.176 4.176 21 C -0.157 4.157 22 H 0.212 0.788 23 H 0.128 0.872 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.290 -8.680 0.576 10.735 hybrid contribution -0.054 0.317 1.530 1.564 sum 6.236 -8.364 2.106 10.643 Atomic orbital electron populations 1.24111 0.95269 1.03541 1.07549 1.23045 0.94244 0.97222 0.94187 1.18157 0.84347 0.90235 0.94890 1.43641 1.56955 1.07759 1.07967 1.19662 1.31880 1.13317 0.81979 0.88310 1.25297 0.94482 0.97137 1.00010 1.70042 1.25890 1.15317 1.38358 0.85975 0.78199 0.78825 0.81977 1.20224 1.20858 1.19506 1.19836 0.83899 0.83553 0.87523 1.90567 1.56630 1.82555 1.17050 1.21988 0.99938 0.87665 0.91795 1.88048 1.76949 1.26327 1.35435 1.22968 0.90140 0.87998 0.94611 1.22056 1.01108 1.00744 0.97766 1.23624 0.97181 0.97753 1.01619 1.22713 0.97942 0.97246 0.99733 1.23014 0.96075 0.98002 0.98572 0.78755 0.87158 0.91850 0.91847 0.91559 0.91256 0.91408 0.91529 0.91747 0.89240 0.91287 0.90186 0.91062 0.91034 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.79 19.25 29.55 0.57 -6.22 16 2 C -0.09 -2.18 11.20 -37.12 -0.42 -2.60 16 3 C 0.25 6.16 5.14 -6.83 -0.04 6.12 16 4 N -0.44 -11.34 2.59 -117.93 -0.30 -11.64 16 5 C -0.34 -8.48 9.27 -14.93 -0.14 -8.62 16 6 H 0.10 2.27 6.44 -52.49 -0.34 1.93 16 7 C 0.04 0.88 5.17 -17.47 -0.09 0.79 16 8 N -0.86 -22.08 8.56 55.50 0.47 -21.61 16 9 Si 0.92 19.01 29.57 -169.99 -5.03 13.98 16 10 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 13 C 0.46 11.78 7.69 -10.98 -0.08 11.69 16 14 O -0.58 -16.54 16.14 -14.32 -0.23 -16.77 16 15 C 0.07 1.37 4.32 36.01 0.16 1.52 16 16 O -0.35 -7.09 9.82 -55.10 -0.54 -7.63 16 17 C 0.08 1.25 1.35 -89.81 -0.12 1.13 16 18 C -0.16 -2.08 8.60 37.16 0.32 -1.76 16 19 C -0.16 -2.14 6.82 -25.83 -0.18 -2.32 16 20 C -0.14 -1.48 7.74 -25.82 -0.20 -1.68 16 21 C -0.12 -1.52 7.49 -25.92 -0.19 -1.71 16 22 H 0.20 3.82 7.80 -54.10 -0.42 3.39 16 23 H 0.11 2.75 6.42 -51.93 -0.33 2.41 16 24 H 0.06 1.54 7.50 -51.93 -0.39 1.15 16 25 H 0.27 6.65 8.32 -40.82 -0.34 6.31 16 26 H 0.07 1.27 7.14 -51.93 -0.37 0.90 16 27 H 0.07 1.40 7.18 -51.93 -0.37 1.03 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.70 7.33 -51.93 -0.38 0.32 16 30 H 0.06 0.84 7.42 -51.93 -0.39 0.46 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.08 0.73 7.63 -51.93 -0.40 0.34 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 303.95 15.07 4.58 4.58 Total: -1.00 -30.58 303.95 -6.51 -37.09 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.06 Total: 5.64 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -0.41 Total: -3.65 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.17 Total: -33.25 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.77 Total: -24.40 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.58 -6.51 -37.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798805226.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.553 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds