Wall clock time and date at job start Thu Apr 9 2020 12:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47419 * 328.82444 * 3 2 1 5 5 C 1.37101 * 120.00354 * 270.27885 * 4 3 2 6 6 H 1.08000 * 120.00242 * 196.16946 * 5 4 3 7 7 C 1.38959 * 119.99455 * 16.16932 * 5 4 3 8 8 N 1.31409 * 120.00205 * 10.64053 * 7 5 4 9 9 Si 1.86800 * 119.99577 * 190.64696 * 7 5 4 10 10 H 1.48496 * 109.47370 * 90.00047 * 9 7 5 11 11 H 1.48500 * 109.47098 * 209.99925 * 9 7 5 12 12 H 1.48497 * 109.47191 * 329.99534 * 9 7 5 13 13 C 1.34779 * 120.00052 * 89.99580 * 4 3 2 14 14 O 1.21290 * 120.00138 * 354.66313 * 13 4 3 15 15 C 1.50705 * 120.00061 * 174.66343 * 13 4 3 16 16 O 1.42898 * 109.47167 * 184.75107 * 15 13 4 17 17 C 1.42895 * 114.00238 * 174.42094 * 16 15 13 18 18 C 1.52998 * 112.84809 * 59.98605 * 17 16 15 19 19 C 1.53776 * 113.61425 * 288.79193 * 17 16 15 20 20 C 1.53963 * 87.02036 * 220.04596 * 19 17 16 21 21 C 1.53779 * 113.61677 * 191.17940 * 17 16 15 22 22 H 4.40641 * 5.51433 * 180.02562 * 4 1 2 23 23 H 1.08997 * 109.46831 * 208.82649 * 3 2 1 24 24 H 1.08998 * 109.47286 * 88.82131 * 3 2 1 25 25 H 0.97000 * 120.00278 * 184.98968 * 8 7 5 26 26 H 1.09003 * 109.46996 * 304.75152 * 15 13 4 27 27 H 1.08998 * 109.46904 * 64.74968 * 15 13 4 28 28 H 1.08994 * 109.47507 * 52.12730 * 18 17 16 29 29 H 1.08998 * 109.47362 * 172.12885 * 18 17 16 30 30 H 1.09006 * 109.47001 * 292.12680 * 18 17 16 31 31 H 1.09003 * 113.61600 * 334.56383 * 19 17 16 32 32 H 1.09005 * 113.61962 * 105.46875 * 19 17 16 33 33 H 1.08993 * 113.53102 * 270.81081 * 20 19 17 34 34 H 1.08997 * 113.74241 * 139.93987 * 20 19 17 35 35 H 1.09000 * 113.61897 * 254.52959 * 21 17 16 36 36 H 1.09005 * 113.61394 * 25.43849 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1808 0.7150 5 6 3.3580 -1.1208 2.0664 6 1 3.9532 -1.8814 2.5498 7 6 2.8183 -0.0813 2.8141 8 7 1.9290 0.7226 2.2757 9 14 3.3571 0.1735 4.5844 10 1 4.5273 1.0870 4.6191 11 1 2.2405 0.7699 5.3607 12 1 3.7317 -1.1338 5.1809 13 6 3.3600 -2.3286 0.0452 14 8 3.0670 -2.4132 -1.1287 15 6 3.9758 -3.5068 0.7550 16 8 4.2144 -4.5571 -0.1841 17 6 4.9135 -5.6774 0.3619 18 6 4.1651 -6.3369 1.5219 19 6 6.3932 -5.3909 0.6670 20 6 6.6944 -6.8009 0.1270 21 6 5.4045 -6.6747 -0.7007 22 1 -1.0498 -0.0004 0.0000 23 1 3.0089 0.9011 0.4955 24 1 3.0094 -0.0203 -1.0274 25 1 1.6060 1.4907 2.7722 26 1 4.9193 -3.2047 1.2096 27 1 3.2957 -3.8600 1.5301 28 1 3.1441 -6.5625 1.2142 29 1 4.6720 -7.2598 1.8035 30 1 4.1459 -5.6581 2.3746 31 1 6.8174 -4.5911 0.0599 32 1 6.6055 -5.2749 1.7299 33 1 6.6493 -7.5779 0.8900 34 1 7.5986 -6.8548 -0.4792 35 1 4.8195 -7.5936 -0.7405 36 1 5.5578 -6.2265 -1.6825 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798805226.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:26:42 Heat of formation + Delta-G solvation = -6.494324 kcal Electronic energy + Delta-G solvation = -18692.163852 eV Core-core repulsion = 15758.027655 eV Total energy + Delta-G solvation = -2934.136197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03024 -40.22002 -37.27520 -36.45932 -33.70858 -33.35910 -30.07322 -29.71894 -27.75708 -26.68235 -26.04592 -24.00917 -21.22573 -19.87547 -19.57585 -18.51980 -18.25587 -17.37245 -16.76689 -16.42830 -16.11437 -15.95558 -15.33091 -15.31067 -14.51578 -14.34326 -13.93071 -13.86356 -13.38368 -13.18488 -13.11775 -12.83956 -12.78190 -12.51622 -12.16521 -12.11268 -11.99618 -11.65233 -11.35217 -11.18783 -11.07033 -10.57231 -10.38316 -10.31042 -9.90985 -8.21673 -5.97972 1.42578 1.48955 1.60058 1.82384 1.97866 2.33255 2.44969 2.61862 3.10901 3.38524 3.65997 3.68098 3.89143 3.91275 3.95368 4.20677 4.32230 4.42322 4.52919 4.63971 4.74855 4.76732 4.87152 4.88617 5.00327 5.02652 5.08190 5.14223 5.30948 5.38026 5.41517 5.51919 5.71381 6.26662 6.43341 7.06658 7.16918 7.46909 7.86963 8.71934 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.022637 B = 0.006614 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.612715 B = 4232.490236 C = 5088.644421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.132 4.132 3 C 0.246 3.754 4 N -0.448 5.448 5 C -0.362 4.362 6 H 0.116 0.884 7 C -0.005 4.005 8 N -0.883 5.883 9 Si 0.995 3.005 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.257 1.257 13 C 0.445 3.555 14 O -0.626 6.626 15 C 0.083 3.917 16 O -0.382 6.382 17 C 0.058 3.942 18 C -0.155 4.155 19 C -0.166 4.166 20 C -0.118 4.118 21 C -0.123 4.123 22 H 0.233 0.767 23 H 0.106 0.894 24 H 0.058 0.942 25 H 0.271 0.729 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.424 -10.197 3.221 13.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.134 4.134 3 C 0.124 3.876 4 N -0.167 5.167 5 C -0.489 4.489 6 H 0.133 0.867 7 C -0.208 4.208 8 N -0.520 5.520 9 Si 0.819 3.181 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.180 1.180 13 C 0.234 3.766 14 O -0.513 6.513 15 C 0.004 3.996 16 O -0.301 6.301 17 C 0.019 3.981 18 C -0.213 4.213 19 C -0.204 4.204 20 C -0.156 4.156 21 C -0.160 4.160 22 H 0.249 0.751 23 H 0.123 0.877 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.123 0.877 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.099 -10.089 2.557 12.598 hybrid contribution -0.360 0.771 0.866 1.214 sum 6.740 -9.318 3.423 11.999 Atomic orbital electron populations 1.25040 0.96316 1.01744 1.05753 1.23427 0.95080 0.98969 0.95902 1.18084 0.84742 0.90226 0.94567 1.43898 1.56309 1.07912 1.08562 1.20128 1.32643 1.14322 0.81759 0.86663 1.26211 0.94100 0.96457 1.04007 1.70181 1.26483 1.15514 1.39861 0.84882 0.77485 0.79181 0.76583 1.19587 1.21461 1.18050 1.20682 0.83900 0.84581 0.87389 1.90517 1.58549 1.83422 1.18852 1.21721 1.00219 0.86490 0.91182 1.88014 1.78023 1.27533 1.36530 1.23574 0.90983 0.87116 0.96383 1.22049 1.00660 1.01886 0.96656 1.23608 0.95517 0.99002 1.02259 1.22698 0.97191 0.96056 0.99614 1.23076 0.97572 0.97773 0.97590 0.75059 0.87659 0.92361 0.91897 0.90030 0.90676 0.92455 0.88343 0.92018 0.90923 0.90017 0.87682 0.89693 0.89485 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.69 19.25 74.32 1.43 -11.26 16 2 C -0.13 -6.88 11.20 31.12 0.35 -6.54 16 3 C 0.25 12.75 5.14 84.57 0.43 13.18 16 4 N -0.45 -23.38 2.59 -645.41 -1.67 -25.04 16 5 C -0.36 -17.89 9.27 84.04 0.78 -17.12 16 6 H 0.12 5.16 6.44 -2.91 -0.02 5.14 16 7 C -0.01 -0.25 5.17 84.93 0.44 0.19 16 8 N -0.88 -45.39 8.56 21.67 0.19 -45.21 16 9 Si 1.00 37.94 29.57 68.60 2.03 39.97 16 10 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 11 H -0.29 -11.22 7.11 99.48 0.71 -10.51 16 12 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 13 C 0.44 23.18 7.69 87.66 0.67 23.85 16 14 O -0.63 -36.87 16.14 15.93 0.26 -36.61 16 15 C 0.08 3.48 4.32 71.24 0.31 3.79 16 16 O -0.38 -15.66 9.82 -129.99 -1.28 -16.94 16 17 C 0.06 1.69 1.35 -10.27 -0.01 1.68 16 18 C -0.16 -3.73 8.60 71.98 0.62 -3.11 16 19 C -0.17 -4.03 6.82 31.18 0.21 -3.82 16 20 C -0.12 -2.15 7.74 31.18 0.24 -1.91 16 21 C -0.12 -2.93 7.49 31.12 0.23 -2.70 16 22 H 0.23 8.59 7.80 -4.43 -0.03 8.56 16 23 H 0.11 5.44 6.42 -2.39 -0.02 5.43 16 24 H 0.06 2.98 7.50 -2.39 -0.02 2.97 16 25 H 0.27 13.27 8.32 -92.71 -0.77 12.49 16 26 H 0.08 3.10 7.14 -2.39 -0.02 3.08 16 27 H 0.08 3.02 7.18 -2.39 -0.02 3.00 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.10 1.70 7.33 -2.39 -0.02 1.68 16 30 H 0.06 1.49 7.42 -2.38 -0.02 1.47 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 1.75 8.10 -2.38 -0.02 1.73 16 33 H 0.10 1.43 7.63 -2.39 -0.02 1.41 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.77 8.10 -2.39 -0.02 1.75 16 36 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -66.70 303.95 6.29 -60.41 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 1.06 Total: 27.17 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 5.71 Total: -3.75 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -1.48 Total: -70.25 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -1.02 Total: -53.55 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -66.70 6.29 -60.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798805226.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.916 kcal (2) G-P(sol) polarization free energy of solvation -66.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds