Wall clock time and date at job start Thu Apr 9 2020 12:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47069 * 2 1 4 4 H 1.09000 * 109.47360 * 305.00120 * 3 2 1 5 5 C 1.47196 * 109.47107 * 65.00283 * 3 2 1 6 6 N 3.43547 * 86.99867 * 40.50957 * 2 1 3 7 7 C 1.50699 * 109.46876 * 184.99814 * 3 2 1 8 8 O 1.21283 * 120.00507 * 0.02562 * 7 3 2 9 9 N 1.34783 * 119.99815 * 179.97438 * 7 3 2 10 10 C 1.46962 * 120.59426 * 359.72521 * 9 7 3 11 11 C 1.53807 * 108.39941 * 124.75725 * 10 9 7 12 12 N 1.46961 * 108.58121 * 49.63399 * 11 10 9 13 13 C 1.36936 * 120.59507 * 124.62883 * 12 11 10 14 14 H 1.08007 * 120.00132 * 207.36739 * 13 12 11 15 15 C 1.38813 * 120.00002 * 27.35746 * 13 12 11 16 16 N 1.31622 * 119.99917 * 215.24579 * 15 13 12 17 17 Si 1.86793 * 119.99713 * 35.25473 * 15 13 12 18 18 H 1.48503 * 109.47734 * 95.36813 * 17 15 13 19 19 H 1.48501 * 109.47118 * 215.36838 * 17 15 13 20 20 H 1.48501 * 109.47173 * 335.36789 * 17 15 13 21 21 C 1.46970 * 118.81521 * 304.65168 * 12 11 10 22 22 C 1.46970 * 120.59349 * 180.02562 * 9 7 3 23 23 H 1.09001 * 109.47451 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47263 * 299.99787 * 1 2 3 25 25 H 1.09002 * 109.46974 * 59.99611 * 1 2 3 26 26 H 1.08996 * 109.46830 * 240.00013 * 2 1 3 27 27 H 1.09002 * 109.46974 * 120.00389 * 2 1 3 28 28 H 1.09000 * 109.60772 * 244.53580 * 10 9 7 29 29 H 1.08995 * 109.60881 * 5.04625 * 10 9 7 30 30 H 1.09003 * 109.74423 * 289.84817 * 11 10 9 31 31 H 1.08997 * 109.53651 * 169.30471 * 11 10 9 32 32 H 0.97004 * 119.99675 * 180.02562 * 16 15 13 33 33 H 1.09004 * 109.60496 * 295.48028 * 21 12 11 34 34 H 1.08995 * 109.61054 * 174.96776 * 21 12 11 35 35 H 1.09006 * 109.60536 * 354.95119 * 22 9 7 36 36 H 1.09003 * 109.60632 * 115.45817 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6506 2.1005 1.2578 6 7 1.3501 2.6084 2.2285 7 6 3.5419 1.4442 -0.1238 8 8 4.1450 0.3951 -0.2046 9 7 4.2149 2.6118 -0.1458 10 6 3.4967 3.8908 -0.0559 11 6 4.0761 4.6911 1.1229 12 7 5.5406 4.7081 1.0026 13 6 6.2244 5.8943 0.9795 14 1 7.1752 5.9598 0.4713 15 6 5.6954 7.0127 1.6089 16 7 5.8774 8.2081 1.0891 17 14 4.7254 6.8211 3.1937 18 1 5.6250 7.0413 4.3546 19 1 3.6250 7.8178 3.2242 20 1 4.1550 5.4517 3.2625 21 6 6.2584 3.4291 0.9071 22 6 5.6795 2.6288 -0.2666 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.6293 4.4506 -0.9818 29 1 2.4363 3.7039 0.1128 30 1 3.7918 4.2192 2.0634 31 1 3.6947 5.7118 1.0930 32 1 5.5080 8.9897 1.5292 33 1 6.1294 2.8673 1.8323 34 1 7.3182 3.6164 0.7347 35 1 6.0608 1.6080 -0.2370 36 1 5.9635 3.1009 -1.2072 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593477708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:19 Heat of formation + Delta-G solvation = 27.142533 kcal Electronic energy + Delta-G solvation = -19055.787556 eV Core-core repulsion = 16155.402714 eV Total energy + Delta-G solvation = -2900.384842 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.34929 -37.38757 -36.87358 -34.32345 -34.05511 -31.73022 -30.83654 -28.96824 -27.01282 -23.73919 -23.36190 -22.50047 -21.13994 -19.40051 -18.01331 -17.25688 -16.35394 -16.09828 -15.10400 -14.85119 -14.60926 -14.31088 -14.03110 -13.86548 -13.60124 -13.06653 -12.94387 -12.73826 -12.52461 -12.24677 -12.20526 -12.00705 -11.89620 -11.36068 -11.14018 -11.09267 -10.87139 -10.51133 -10.43565 -10.22001 -9.70527 -9.50751 -8.84089 -8.33530 -7.07634 -6.13711 -3.36195 2.31375 2.63582 2.73684 3.14510 3.34484 3.46423 3.53460 3.78772 4.37839 4.48289 4.54971 4.73456 4.79440 5.09580 5.18089 5.21229 5.41293 5.44820 5.51431 5.69967 5.76052 5.81491 5.83463 5.95739 5.99505 6.03591 6.13105 6.43048 6.52911 6.68974 6.75891 7.39555 7.53170 7.82462 8.14480 8.19962 8.82343 9.61313 10.00380 11.00547 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.028967 B = 0.007115 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.386093 B = 3934.129507 C = 4548.074265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.100 4.100 3 C -0.011 4.011 4 H 0.137 0.863 5 C 0.205 3.795 6 N -0.405 5.405 7 C 0.520 3.480 8 O -0.537 6.537 9 N -0.592 5.592 10 C 0.080 3.920 11 C 0.133 3.867 12 N -0.599 5.599 13 C -0.276 4.276 14 H 0.084 0.916 15 C 0.041 3.959 16 N -0.880 5.880 17 Si 0.832 3.168 18 H -0.291 1.291 19 H -0.293 1.293 20 H -0.256 1.256 21 C 0.131 3.869 22 C 0.095 3.905 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.264 0.736 33 H 0.026 0.974 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.839 -13.723 -5.466 17.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.139 4.139 3 C -0.035 4.035 4 H 0.155 0.845 5 C -0.113 4.113 6 N -0.081 5.081 7 C 0.304 3.696 8 O -0.415 6.415 9 N -0.324 5.324 10 C -0.045 4.045 11 C 0.006 3.994 12 N -0.322 5.322 13 C -0.403 4.403 14 H 0.102 0.898 15 C -0.160 4.160 16 N -0.520 5.520 17 Si 0.659 3.341 18 H -0.218 1.218 19 H -0.220 1.220 20 H -0.180 1.180 21 C 0.004 3.996 22 C -0.028 4.028 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.942 -13.278 -4.042 16.511 hybrid contribution -0.452 0.174 0.695 0.847 sum -9.394 -13.105 -3.347 16.467 Atomic orbital electron populations 1.21868 0.94873 1.02541 1.02195 1.21377 0.95789 0.91619 1.05109 1.19135 0.94797 0.98771 0.90822 0.84532 1.28338 0.94469 0.93909 0.94578 1.81293 1.07894 1.08251 1.10629 1.19902 0.88095 0.84006 0.77563 1.90693 1.69042 1.30806 1.50916 1.48087 1.08369 1.05670 1.70226 1.22748 0.94860 0.84378 1.02475 1.21784 0.85090 0.98674 0.93877 1.44282 1.00258 1.02051 1.85632 1.18777 1.06584 0.84883 1.30082 0.89802 1.25216 0.97702 0.94780 0.98322 1.70076 1.45944 0.98803 1.37156 0.87672 0.79649 0.78806 0.87944 1.21820 1.21953 1.18032 1.21375 0.96608 0.87021 0.94557 1.22308 0.78159 1.01694 1.00642 0.91676 0.92804 0.92026 0.88880 0.90428 0.90057 0.91271 0.94747 0.90450 0.92648 0.95609 0.90422 0.89359 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.72 37.16 0.36 -0.79 16 2 C -0.10 -0.91 4.73 -26.73 -0.13 -1.04 16 3 C -0.01 -0.12 1.84 -94.56 -0.17 -0.29 16 4 H 0.14 1.07 7.90 -51.93 -0.41 0.66 16 5 C 0.21 2.83 10.92 -20.76 -0.23 2.60 16 6 N -0.40 -6.70 18.54 42.16 0.78 -5.92 16 7 C 0.52 7.57 7.06 -10.98 -0.08 7.49 16 8 O -0.54 -8.94 15.32 5.55 0.09 -8.85 16 9 N -0.59 -9.45 2.94 -172.19 -0.51 -9.95 16 10 C 0.08 1.31 6.04 -3.37 -0.02 1.29 16 11 C 0.13 2.81 4.53 -3.37 -0.02 2.79 16 12 N -0.60 -13.72 2.70 -171.74 -0.46 -14.19 16 13 C -0.28 -7.39 9.86 -15.06 -0.15 -7.54 16 14 H 0.08 2.38 8.06 -52.48 -0.42 1.95 16 15 C 0.04 1.16 4.85 -17.43 -0.08 1.07 16 16 N -0.88 -25.93 13.97 55.49 0.78 -25.16 16 17 Si 0.83 21.22 26.43 -169.99 -4.49 16.72 16 18 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 19 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 20 H -0.26 -6.37 4.82 56.52 0.27 -6.09 16 21 C 0.13 2.51 6.67 -3.58 -0.02 2.49 16 22 C 0.10 1.56 6.59 -3.58 -0.02 1.53 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.46 7.38 -51.93 -0.38 0.07 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.79 7.95 -51.93 -0.41 0.38 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.07 0.97 4.61 -51.93 -0.24 0.73 16 30 H 0.03 0.78 6.69 -51.93 -0.35 0.43 16 31 H 0.08 1.77 5.59 -51.93 -0.29 1.48 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 1.43 7.93 -51.93 -0.41 1.01 16 35 H 0.09 1.37 6.99 -51.93 -0.36 1.01 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 292.02 15.07 4.40 4.40 Total: -1.00 -31.92 292.02 -5.06 -36.98 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -5.08 Total: -3.64 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -0.56 Total: 9.60 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.59 Total: -55.21 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.49 Total: 16.72 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.92 -5.06 -36.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593477708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.123 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds