Wall clock time and date at job start Thu Apr 9 2020 12:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46754 * 2 1 4 4 C 1.47199 * 109.46903 * 120.00143 * 2 1 3 5 5 N 2.60800 * 109.47219 * 119.99971 * 2 1 3 6 6 C 1.50696 * 109.46963 * 240.00307 * 2 1 3 7 7 O 1.21281 * 119.99825 * 263.40613 * 6 2 1 8 8 N 1.34776 * 120.00426 * 83.41027 * 6 2 1 9 9 C 1.46924 * 120.62894 * 4.77267 * 8 6 2 10 10 C 1.52767 * 109.00896 * 233.58689 * 9 8 6 11 11 C 1.53040 * 109.37940 * 305.58797 * 10 9 8 12 12 N 1.46500 * 109.44538 * 181.25692 * 11 10 9 13 13 C 1.36935 * 120.00440 * 84.93909 * 12 11 10 14 14 H 1.07997 * 119.99536 * 359.97438 * 13 12 11 15 15 C 1.38809 * 120.00080 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00184 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99876 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47133 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46787 * 119.99983 * 17 15 13 20 20 H 1.48497 * 109.47114 * 239.99982 * 17 15 13 21 21 C 1.53041 * 109.53949 * 61.24125 * 11 10 9 22 22 C 1.46928 * 120.63166 * 185.05809 * 8 6 2 23 23 H 1.08994 * 109.47012 * 175.20587 * 1 2 3 24 24 H 1.08996 * 109.47094 * 295.20772 * 1 2 3 25 25 H 1.08998 * 109.46790 * 55.20652 * 1 2 3 26 26 H 1.09003 * 109.58546 * 353.41950 * 9 8 6 27 27 H 1.08994 * 109.58721 * 113.84497 * 9 8 6 28 28 H 1.09000 * 109.56257 * 185.55238 * 10 9 8 29 29 H 1.08993 * 109.35588 * 65.50001 * 10 9 8 30 30 H 1.09000 * 109.46212 * 301.21665 * 11 10 9 31 31 H 0.97010 * 119.99860 * 264.93641 * 12 11 10 32 32 H 0.97003 * 120.00139 * 179.97438 * 16 15 13 33 33 H 1.09000 * 109.49620 * 178.67849 * 21 11 10 34 34 H 1.09000 * 109.49530 * 58.58411 * 21 11 10 35 35 H 1.09001 * 109.58385 * 246.15239 * 22 8 6 36 36 H 1.09002 * 109.58502 * 6.43105 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3994 -1.2294 2.1294 6 6 2.0323 -0.7103 -1.2305 7 8 2.3482 -1.8797 -1.1691 8 7 2.1307 -0.0462 -2.3991 9 6 1.8520 1.3948 -2.4670 10 6 0.8086 1.6492 -3.5534 11 6 1.2892 1.0388 -4.8719 12 7 0.3036 1.3079 -5.9219 13 6 0.3395 2.4928 -6.6074 14 1 1.0943 3.2290 -6.3737 15 6 -0.5947 2.7479 -7.6018 16 7 -1.5149 1.8508 -7.8862 17 14 -0.5461 4.3646 -8.5364 18 1 0.5763 5.1951 -8.0308 19 1 -0.3485 4.0941 -9.9832 20 1 -1.8270 5.0894 -8.3387 21 6 1.4565 -0.4733 -4.7051 22 6 2.5126 -0.7506 -3.6307 23 1 -0.3633 -1.0240 -0.0859 24 1 -0.3633 0.4377 0.9298 25 1 -0.3633 0.5864 -0.8439 26 1 1.4684 1.7384 -1.5062 27 1 2.7679 1.9330 -2.7107 28 1 0.6673 2.7226 -3.6795 29 1 -0.1356 1.1892 -3.2622 30 1 2.2457 1.4815 -5.1498 31 1 -0.3746 0.6467 -6.1315 32 1 -2.1680 2.0293 -8.5808 33 1 1.7762 -0.9105 -5.6510 34 1 0.5061 -0.9133 -4.4032 35 1 3.4835 -0.3909 -3.9712 36 1 2.5672 -1.8219 -3.4369 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990262969.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:21 Heat of formation + Delta-G solvation = 0.425240 kcal Electronic energy + Delta-G solvation = -18427.491796 eV Core-core repulsion = 15525.948405 eV Total energy + Delta-G solvation = -2901.543391 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.51803 -37.76929 -36.62187 -34.68114 -33.59791 -31.97226 -30.80328 -29.31362 -25.83218 -24.72429 -23.13794 -22.77530 -20.85152 -19.28581 -17.77710 -17.52838 -17.12145 -15.63196 -15.46069 -14.90872 -14.50454 -14.16975 -13.79525 -13.63514 -13.56436 -13.29745 -13.16550 -12.78630 -12.58876 -12.37503 -12.04515 -12.01475 -11.71013 -11.61166 -11.04874 -10.95359 -10.89170 -10.57784 -10.26314 -9.92006 -9.85584 -9.73595 -8.98360 -8.66874 -7.05093 -5.84185 -3.13809 2.29899 2.35311 2.61274 3.05446 3.37862 3.43556 3.46065 3.63459 4.24209 4.51440 4.57001 4.64895 4.95552 5.18476 5.23736 5.28312 5.32187 5.39275 5.45911 5.52534 5.63622 5.77223 5.85200 5.90117 6.13525 6.25416 6.29158 6.41171 6.49007 6.79217 6.94577 7.23477 7.37985 7.62683 7.96731 8.33901 9.45495 10.02405 10.36610 11.38259 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.043843 B = 0.004479 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.484203 B = 6249.234228 C = 6473.064681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.015 4.015 3 H 0.137 0.863 4 C 0.225 3.775 5 N -0.419 5.419 6 C 0.524 3.476 7 O -0.537 6.537 8 N -0.598 5.598 9 C 0.100 3.900 10 C -0.153 4.153 11 C 0.178 3.822 12 N -0.724 5.724 13 C -0.241 4.241 14 H 0.071 0.929 15 C -0.012 4.012 16 N -0.931 5.931 17 Si 0.905 3.095 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.140 4.140 22 C 0.116 3.884 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.068 -0.218 12.186 13.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.040 4.040 3 H 0.154 0.846 4 C -0.094 4.094 5 N -0.094 5.094 6 C 0.309 3.691 7 O -0.414 6.414 8 N -0.331 5.331 9 C -0.023 4.023 10 C -0.194 4.194 11 C 0.068 3.932 12 N -0.364 5.364 13 C -0.373 4.373 14 H 0.089 0.911 15 C -0.208 4.208 16 N -0.579 5.579 17 Si 0.736 3.264 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.178 4.178 22 C -0.006 4.006 23 H 0.091 0.909 24 H 0.097 0.903 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.218 0.782 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.856 -1.476 13.503 14.792 hybrid contribution -0.494 1.045 -1.083 1.583 sum 5.362 -0.431 12.421 13.535 Atomic orbital electron populations 1.21789 0.89050 1.04657 1.04585 1.18932 0.99317 0.99972 0.85733 0.84604 1.28198 0.93657 0.93638 0.93938 1.81176 1.08098 1.08067 1.12097 1.19894 0.78258 0.86905 0.84012 1.90749 1.49433 1.16402 1.84830 1.48111 1.67169 1.10001 1.07810 1.21956 1.00253 0.79389 1.00681 1.22631 0.97682 1.02832 0.96232 1.20170 0.93500 0.91523 0.88041 1.42444 1.34684 1.19717 1.39605 1.19265 1.11233 0.94202 1.12550 0.91074 1.24750 0.98140 0.98220 0.99707 1.69668 1.19228 1.34479 1.34545 0.86149 0.77210 0.83222 0.79770 1.20532 1.21881 1.21868 1.22220 0.98854 0.98658 0.98118 1.21679 0.97901 0.98111 0.82891 0.90871 0.90308 0.89305 0.90139 0.90900 0.90342 0.91939 0.93327 0.78234 0.93498 0.90398 0.91697 0.91233 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.02 37.16 0.34 -0.70 16 2 C -0.02 -0.13 2.25 -94.56 -0.21 -0.35 16 3 H 0.14 0.73 6.36 -51.93 -0.33 0.40 16 4 C 0.22 2.68 14.00 -20.76 -0.29 2.39 16 5 N -0.42 -6.09 18.54 42.15 0.78 -5.31 16 6 C 0.52 6.42 6.80 -10.99 -0.07 6.35 16 7 O -0.54 -8.76 15.66 5.56 0.09 -8.68 16 8 N -0.60 -6.89 2.98 -173.03 -0.52 -7.40 16 9 C 0.10 0.98 6.13 -3.93 -0.02 0.96 16 10 C -0.15 -2.11 5.64 -26.83 -0.15 -2.26 16 11 C 0.18 3.02 2.73 -67.89 -0.19 2.83 16 12 N -0.72 -16.53 5.12 -53.39 -0.27 -16.80 16 13 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 14 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 15 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -26.92 13.06 55.49 0.72 -26.20 16 17 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C -0.14 -2.04 5.55 -26.61 -0.15 -2.19 16 22 C 0.12 1.46 6.42 -3.71 -0.02 1.43 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.09 0.60 7.66 -51.93 -0.40 0.20 16 26 H 0.08 0.54 5.07 -51.93 -0.26 0.27 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 31 H 0.38 9.52 7.80 -40.82 -0.32 9.20 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.18 7.03 -51.93 -0.37 0.82 16 LS Contribution 303.48 15.07 4.57 4.57 Total: -1.00 -32.31 303.48 -5.69 -38.00 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.02 Total: 3.85 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -1.02 Total: 1.70 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.72 Total: -55.71 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.31 -5.69 -38.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990262969.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.428 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds