Wall clock time and date at job start Thu Apr 9 2020 12:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46754 * 2 1 4 4 C 1.47199 * 109.46903 * 120.00143 * 2 1 3 5 5 N 2.60800 * 109.47219 * 119.99971 * 2 1 3 6 6 C 1.50696 * 109.46963 * 240.00307 * 2 1 3 7 7 O 1.21281 * 119.99825 * 263.40613 * 6 2 1 8 8 N 1.34776 * 120.00426 * 83.41027 * 6 2 1 9 9 C 1.46924 * 120.62894 * 4.77267 * 8 6 2 10 10 C 1.52767 * 109.00896 * 233.58689 * 9 8 6 11 11 C 1.53040 * 109.37940 * 305.58797 * 10 9 8 12 12 N 1.46500 * 109.44538 * 181.25692 * 11 10 9 13 13 C 1.36935 * 120.00440 * 84.93909 * 12 11 10 14 14 H 1.07997 * 119.99536 * 359.97438 * 13 12 11 15 15 C 1.38809 * 120.00080 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00184 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99876 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47133 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46787 * 119.99983 * 17 15 13 20 20 H 1.48497 * 109.47114 * 239.99982 * 17 15 13 21 21 C 1.53041 * 109.53949 * 61.24125 * 11 10 9 22 22 C 1.46928 * 120.63166 * 185.05809 * 8 6 2 23 23 H 1.08994 * 109.47012 * 175.20587 * 1 2 3 24 24 H 1.08996 * 109.47094 * 295.20772 * 1 2 3 25 25 H 1.08998 * 109.46790 * 55.20652 * 1 2 3 26 26 H 1.09003 * 109.58546 * 353.41950 * 9 8 6 27 27 H 1.08994 * 109.58721 * 113.84497 * 9 8 6 28 28 H 1.09000 * 109.56257 * 185.55238 * 10 9 8 29 29 H 1.08993 * 109.35588 * 65.50001 * 10 9 8 30 30 H 1.09000 * 109.46212 * 301.21665 * 11 10 9 31 31 H 0.97010 * 119.99860 * 264.93641 * 12 11 10 32 32 H 0.97003 * 120.00139 * 179.97438 * 16 15 13 33 33 H 1.09000 * 109.49620 * 178.67849 * 21 11 10 34 34 H 1.09000 * 109.49530 * 58.58411 * 21 11 10 35 35 H 1.09001 * 109.58385 * 246.15239 * 22 8 6 36 36 H 1.09002 * 109.58502 * 6.43105 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3994 -1.2294 2.1294 6 6 2.0323 -0.7103 -1.2305 7 8 2.3482 -1.8797 -1.1691 8 7 2.1307 -0.0462 -2.3991 9 6 1.8520 1.3948 -2.4670 10 6 0.8086 1.6492 -3.5534 11 6 1.2892 1.0388 -4.8719 12 7 0.3036 1.3079 -5.9219 13 6 0.3395 2.4928 -6.6074 14 1 1.0943 3.2290 -6.3737 15 6 -0.5947 2.7479 -7.6018 16 7 -1.5149 1.8508 -7.8862 17 14 -0.5461 4.3646 -8.5364 18 1 0.5763 5.1951 -8.0308 19 1 -0.3485 4.0941 -9.9832 20 1 -1.8270 5.0894 -8.3387 21 6 1.4565 -0.4733 -4.7051 22 6 2.5126 -0.7506 -3.6307 23 1 -0.3633 -1.0240 -0.0859 24 1 -0.3633 0.4377 0.9298 25 1 -0.3633 0.5864 -0.8439 26 1 1.4684 1.7384 -1.5062 27 1 2.7679 1.9330 -2.7107 28 1 0.6673 2.7226 -3.6795 29 1 -0.1356 1.1892 -3.2622 30 1 2.2457 1.4815 -5.1498 31 1 -0.3746 0.6467 -6.1315 32 1 -2.1680 2.0293 -8.5808 33 1 1.7762 -0.9105 -5.6510 34 1 0.5061 -0.9133 -4.4032 35 1 3.4835 -0.3909 -3.9712 36 1 2.5672 -1.8219 -3.4369 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990262969.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:19 Heat of formation + Delta-G solvation = -21.569606 kcal Electronic energy + Delta-G solvation = -18428.445564 eV Core-core repulsion = 15525.948405 eV Total energy + Delta-G solvation = -2902.497159 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.50129 -38.92735 -37.64039 -36.14843 -34.59345 -33.52828 -31.83056 -30.90279 -26.90357 -25.93689 -24.37177 -24.07133 -22.02593 -20.44409 -19.02153 -18.62492 -18.44198 -16.73221 -16.54528 -16.39439 -15.44250 -15.40492 -15.28783 -15.07662 -14.75713 -14.30449 -14.19665 -13.77399 -13.68481 -13.31273 -13.23013 -13.00245 -12.83065 -12.75577 -12.56977 -12.40737 -12.07164 -12.04682 -11.93091 -11.63885 -11.21433 -10.95704 -10.72737 -9.68439 -8.93299 -7.87912 -5.15560 1.37437 1.43511 1.52506 1.53637 1.62596 1.69449 2.14592 2.61851 2.80826 3.40406 3.46867 3.87542 3.92661 3.99018 4.04082 4.19120 4.28552 4.44737 4.51253 4.71564 4.79853 4.81185 4.89354 4.91752 4.94158 5.11942 5.17547 5.26256 5.37904 5.57642 5.62070 5.73493 6.30845 6.34692 6.48334 7.01978 7.40795 8.18352 8.39441 9.36002 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.043843 B = 0.004479 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.484203 B = 6249.234228 C = 6473.064681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.007 4.007 3 H 0.184 0.816 4 C 0.244 3.756 5 N -0.472 5.472 6 C 0.523 3.477 7 O -0.584 6.584 8 N -0.595 5.595 9 C 0.105 3.895 10 C -0.143 4.143 11 C 0.169 3.831 12 N -0.740 5.740 13 C -0.228 4.228 14 H 0.082 0.918 15 C -0.079 4.079 16 N -0.973 5.973 17 Si 0.966 3.034 18 H -0.262 1.262 19 H -0.301 1.301 20 H -0.297 1.297 21 C -0.128 4.128 22 C 0.123 3.877 23 H 0.054 0.946 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.124 0.876 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.370 0.630 32 H 0.248 0.752 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.992 1.691 13.581 14.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 H 0.201 0.799 4 C -0.074 4.074 5 N -0.148 5.148 6 C 0.310 3.690 7 O -0.464 6.464 8 N -0.327 5.327 9 C -0.017 4.017 10 C -0.183 4.183 11 C 0.061 3.939 12 N -0.379 5.379 13 C -0.360 4.360 14 H 0.099 0.901 15 C -0.270 4.270 16 N -0.624 5.624 17 Si 0.796 3.204 18 H -0.186 1.186 19 H -0.229 1.229 20 H -0.225 1.225 21 C -0.167 4.167 22 C 0.000 4.000 23 H 0.073 0.927 24 H 0.121 0.879 25 H 0.119 0.881 26 H 0.142 0.858 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.201 0.799 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.826 0.466 14.943 16.435 hybrid contribution -0.731 0.402 -1.511 1.726 sum 6.095 0.868 13.433 14.776 Atomic orbital electron populations 1.21853 0.87564 1.04111 1.06413 1.19185 1.00185 1.01228 0.82434 0.79943 1.28747 0.92291 0.92518 0.93833 1.81196 1.09883 1.09660 1.14034 1.20432 0.77263 0.86384 0.84913 1.90743 1.51438 1.18593 1.85608 1.48151 1.66564 1.10683 1.07267 1.22092 0.99962 0.78290 1.01319 1.22392 0.98674 1.01794 0.95477 1.20478 0.92081 0.93135 0.88177 1.42696 1.35451 1.18625 1.41089 1.19674 1.10105 0.94838 1.11422 0.90060 1.25492 0.98714 1.01298 1.01537 1.69822 1.20495 1.36479 1.35606 0.85166 0.77284 0.80018 0.77882 1.18600 1.22887 1.22473 1.22061 0.99109 0.96960 0.98591 1.21531 0.97686 0.98032 0.82754 0.92651 0.87923 0.88082 0.85823 0.88979 0.91047 0.92558 0.93328 0.79895 0.94345 0.91420 0.92783 0.89619 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.02 71.98 0.65 -0.89 16 2 C -0.01 -0.09 2.25 -13.34 -0.03 -0.12 16 3 H 0.18 0.82 6.36 -2.39 -0.02 0.81 16 4 C 0.24 5.29 14.00 89.44 1.25 6.54 16 5 N -0.47 -13.24 18.54 20.01 0.37 -12.87 16 6 C 0.52 11.43 6.80 87.66 0.60 12.03 16 7 O -0.58 -18.45 15.66 -3.03 -0.05 -18.50 16 8 N -0.60 -11.84 2.98 -819.74 -2.44 -14.28 16 9 C 0.11 1.58 6.13 86.22 0.53 2.11 16 10 C -0.14 -3.53 5.64 30.53 0.17 -3.35 16 11 C 0.17 5.49 2.73 45.02 0.12 5.62 16 12 N -0.74 -33.59 5.12 -322.82 -1.65 -35.25 16 13 C -0.23 -11.58 9.93 84.03 0.83 -10.74 16 14 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 15 C -0.08 -4.26 5.50 84.86 0.47 -3.80 16 16 N -0.97 -57.38 13.06 21.65 0.28 -57.09 16 17 Si 0.97 43.75 29.55 68.60 2.03 45.78 16 18 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 20 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 21 C -0.13 -3.65 5.55 30.67 0.17 -3.48 16 22 C 0.12 2.86 6.42 86.36 0.55 3.41 16 23 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.10 0.91 7.66 -2.39 -0.02 0.89 16 26 H 0.12 0.85 5.07 -2.39 -0.01 0.84 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.59 8.08 -2.39 -0.02 1.57 16 31 H 0.37 18.68 7.80 -92.70 -0.72 17.96 16 32 H 0.25 14.31 8.31 -92.71 -0.77 13.53 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 2.08 7.03 -2.39 -0.02 2.06 16 Total: -1.00 -72.55 303.48 4.22 -68.33 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.37 Total: 16.56 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 5.32 Total: 7.32 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -3.44 Total: -119.49 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.05 Total: -18.50 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -72.55 4.22 -68.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990262969.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.757 kcal (2) G-P(sol) polarization free energy of solvation -72.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds