Wall clock time and date at job start Thu Apr 9 2020 12:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46766 * 2 1 4 4 C 1.47202 * 109.47011 * 119.99149 * 2 1 3 5 5 N 2.60796 * 109.47128 * 119.99211 * 2 1 3 6 6 C 1.50694 * 109.47355 * 239.99485 * 2 1 3 7 7 O 1.21284 * 120.00353 * 246.69743 * 6 2 1 8 8 N 1.34779 * 120.00126 * 66.70555 * 6 2 1 9 9 C 1.47419 * 125.65043 * 185.79077 * 8 6 2 10 10 C 1.54911 * 104.83193 * 204.15997 * 9 8 6 11 11 C 1.55154 * 101.58262 * 322.98950 * 10 9 8 12 12 H 1.08999 * 110.86915 * 277.06893 * 11 10 9 13 13 N 1.46491 * 110.72175 * 153.86792 * 11 10 9 14 14 C 1.36936 * 120.00557 * 91.47507 * 13 11 10 15 15 H 1.07997 * 119.99693 * 0.02562 * 14 13 11 16 16 C 1.38812 * 120.00250 * 179.72601 * 14 13 11 17 17 N 1.31612 * 120.00126 * 0.27450 * 16 14 13 18 18 Si 1.86799 * 119.99830 * 180.27510 * 16 14 13 19 19 H 1.48505 * 109.46890 * 90.00093 * 18 16 14 20 20 H 1.48497 * 109.47440 * 209.99809 * 18 16 14 21 21 H 1.48496 * 109.47462 * 330.00282 * 18 16 14 22 22 C 1.47019 * 125.64723 * 5.82671 * 8 6 2 23 23 H 1.09003 * 109.88553 * 298.32522 * 22 8 6 24 24 C 1.52996 * 109.88434 * 59.49045 * 22 8 6 25 25 H 1.08999 * 109.47187 * 53.72055 * 1 2 3 26 26 H 1.09001 * 109.46734 * 173.71232 * 1 2 3 27 27 H 1.08993 * 109.47610 * 293.70894 * 1 2 3 28 28 H 1.09002 * 110.36489 * 322.99561 * 9 8 6 29 29 H 1.09001 * 110.37043 * 85.32202 * 9 8 6 30 30 H 1.09004 * 111.00102 * 204.91256 * 10 9 8 31 31 H 1.09003 * 111.00496 * 81.06845 * 10 9 8 32 32 H 0.97002 * 120.00266 * 271.48005 * 13 11 10 33 33 H 0.97006 * 120.00382 * 179.97438 * 17 16 14 34 34 H 1.09000 * 109.47660 * 170.69978 * 24 22 8 35 35 H 1.08999 * 109.47578 * 290.69774 * 24 22 8 36 36 H 1.08999 * 109.47275 * 50.69430 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6937 1.2020 5 7 2.3993 -1.2291 2.1296 6 6 2.0323 -0.7105 -1.2303 7 8 2.6263 -1.7625 -1.1231 8 7 1.8218 -0.1768 -2.4499 9 6 2.1492 -0.8178 -3.7365 10 6 2.3144 0.3561 -4.7337 11 6 1.2123 1.3345 -4.2485 12 1 0.2413 1.0611 -4.6615 13 7 1.5531 2.7150 -4.6005 14 6 1.1210 3.2459 -5.7866 15 1 0.5286 2.6469 -6.4623 16 6 1.4391 4.5559 -6.1175 17 7 2.1607 5.2861 -5.2938 18 14 0.8432 5.2824 -7.7319 19 1 -0.4834 5.9182 -7.5288 20 1 1.8137 6.3024 -8.2040 21 1 0.7253 4.2044 -8.7464 22 6 1.2283 1.1414 -2.7175 23 1 0.2105 1.1755 -2.3289 24 6 2.0748 2.2356 -2.0640 25 1 -0.3633 0.6081 -0.8284 26 1 -0.3633 -1.0215 -0.1126 27 1 -0.3634 0.4132 0.9408 28 1 3.0797 -1.3796 -3.6544 29 1 1.3366 -1.4720 -4.0521 30 1 2.1247 0.0297 -5.7562 31 1 3.3031 0.8069 -4.6462 32 1 2.0849 3.2532 -3.9935 33 1 2.3833 6.2014 -5.5252 34 1 1.7282 3.2127 -2.4003 35 1 1.9799 2.1698 -0.9801 36 1 3.1195 2.1038 -2.3458 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074567903.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:29 Heat of formation + Delta-G solvation = 18.477847 kcal Electronic energy + Delta-G solvation = -18731.784585 eV Core-core repulsion = 15831.024013 eV Total energy + Delta-G solvation = -2900.760571 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.48796 -37.99209 -36.53611 -34.30960 -33.63186 -31.56980 -30.75082 -28.90311 -25.61920 -25.44556 -23.64374 -22.72585 -20.04753 -19.42646 -17.97634 -17.28889 -17.03181 -15.94040 -15.32569 -15.01172 -14.56790 -14.09944 -13.90541 -13.54336 -13.28705 -13.02074 -12.72192 -12.67446 -12.37582 -12.33846 -12.10024 -11.81849 -11.67412 -11.56923 -11.20942 -11.00400 -10.86011 -10.53899 -10.27922 -10.12182 -9.86903 -9.74945 -9.04813 -8.57641 -7.14179 -5.92035 -3.22188 2.41168 2.45644 2.72711 3.15820 3.35326 3.41639 3.42891 3.72059 4.34316 4.48849 4.63722 4.73753 4.95037 5.08788 5.21948 5.32893 5.37457 5.41777 5.49423 5.58249 5.67549 5.81244 5.88235 5.99004 6.09008 6.17134 6.26232 6.43951 6.51688 6.59755 6.82755 7.40381 7.57165 7.59068 8.06671 8.26434 9.38599 9.91214 10.25604 11.30261 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.040188 B = 0.005053 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.566688 B = 5539.676654 C = 5874.522975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.022 4.022 3 H 0.146 0.854 4 C 0.227 3.773 5 N -0.421 5.421 6 C 0.541 3.459 7 O -0.540 6.540 8 N -0.602 5.602 9 C 0.106 3.894 10 C -0.155 4.155 11 C 0.175 3.825 12 H 0.070 0.930 13 N -0.716 5.716 14 C -0.248 4.248 15 H 0.072 0.928 16 C -0.008 4.008 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.109 3.891 23 H 0.083 0.917 24 C -0.174 4.174 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.390 0.610 33 H 0.257 0.743 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 -7.008 5.920 10.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.046 4.046 3 H 0.163 0.837 4 C -0.092 4.092 5 N -0.096 5.096 6 C 0.326 3.674 7 O -0.418 6.418 8 N -0.335 5.335 9 C -0.017 4.017 10 C -0.196 4.196 11 C 0.063 3.937 12 H 0.088 0.912 13 N -0.360 5.360 14 C -0.379 4.379 15 H 0.090 0.910 16 C -0.204 4.204 17 N -0.579 5.579 18 Si 0.739 3.261 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.005 3.995 23 H 0.101 0.899 24 C -0.232 4.232 25 H 0.108 0.892 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.229 0.771 33 H 0.067 0.933 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.415 -8.321 7.278 11.571 hybrid contribution -0.160 0.892 -1.135 1.452 sum -3.576 -7.429 6.143 10.282 Atomic orbital electron populations 1.21854 0.89517 1.04301 1.04698 1.19157 0.99146 1.00771 0.85513 0.83682 1.28176 0.93547 0.93567 0.93887 1.81150 1.08038 1.08180 1.12257 1.19488 0.79617 0.85118 0.83138 1.90753 1.41519 1.23526 1.85991 1.48484 1.61014 1.18979 1.05028 1.22305 1.00743 0.96283 0.82330 1.23588 1.02282 0.95700 0.98058 1.21155 0.96368 0.87094 0.89047 0.91247 1.42703 1.63242 1.07880 1.22176 1.19243 1.27565 0.95343 0.95721 0.90970 1.24737 1.00379 0.96713 0.98582 1.69637 1.42214 1.09222 1.36789 0.86187 0.77935 0.78842 0.83167 1.21609 1.21757 1.20677 1.22197 0.96566 0.81443 0.99300 0.89936 1.22370 1.01154 1.00644 0.99022 0.89193 0.91148 0.90317 0.90902 0.91524 0.90411 0.90675 0.77124 0.93293 0.88557 0.92965 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.00 37.16 0.33 -0.82 16 2 C -0.02 -0.23 2.43 -94.56 -0.23 -0.46 16 3 H 0.15 1.26 4.94 -51.93 -0.26 1.00 16 4 C 0.23 3.05 13.89 -20.76 -0.29 2.76 16 5 N -0.42 -6.64 18.54 42.15 0.78 -5.86 16 6 C 0.54 7.48 6.88 -10.99 -0.08 7.41 16 7 O -0.54 -9.59 16.27 5.55 0.09 -9.50 16 8 N -0.60 -7.92 3.08 -163.03 -0.50 -8.42 16 9 C 0.11 1.41 6.94 -2.53 -0.02 1.39 16 10 C -0.15 -2.33 6.77 -24.58 -0.17 -2.50 16 11 C 0.18 2.86 3.49 -66.10 -0.23 2.63 16 12 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 13 N -0.72 -15.29 4.91 -51.66 -0.25 -15.54 16 14 C -0.25 -6.12 9.96 -15.06 -0.15 -6.27 16 15 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 17 N -0.93 -25.76 13.06 55.49 0.72 -25.04 16 18 Si 0.91 20.75 29.55 -169.99 -5.02 15.73 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 C 0.11 1.42 2.98 -66.96 -0.20 1.22 16 23 H 0.08 0.91 5.77 -51.93 -0.30 0.61 16 24 C -0.17 -2.30 8.02 37.16 0.30 -2.00 16 25 H 0.09 0.64 5.50 -51.93 -0.29 0.35 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.50 8.13 -51.93 -0.42 0.07 16 28 H 0.07 1.01 7.98 -51.93 -0.41 0.60 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.39 8.72 4.96 -40.82 -0.20 8.52 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.10 1.51 6.26 -51.93 -0.32 1.18 16 35 H 0.05 0.52 5.05 -51.93 -0.26 0.26 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 296.10 15.07 4.46 4.46 Total: -1.00 -30.64 296.10 -5.09 -35.73 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.55 Total: 5.37 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -0.82 Total: 3.06 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.75 Total: -54.86 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.64 -5.09 -35.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074567903.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.211 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds