Wall clock time and date at job start Thu Apr 9 2020 12:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46766 * 2 1 4 4 C 1.47202 * 109.47011 * 119.99149 * 2 1 3 5 5 N 2.60796 * 109.47128 * 119.99211 * 2 1 3 6 6 C 1.50694 * 109.47355 * 239.99485 * 2 1 3 7 7 O 1.21284 * 120.00353 * 246.69743 * 6 2 1 8 8 N 1.34779 * 120.00126 * 66.70555 * 6 2 1 9 9 C 1.47419 * 125.65043 * 185.79077 * 8 6 2 10 10 C 1.54911 * 104.83193 * 204.15997 * 9 8 6 11 11 C 1.55154 * 101.58262 * 322.98950 * 10 9 8 12 12 H 1.08999 * 110.86915 * 277.06893 * 11 10 9 13 13 N 1.46491 * 110.72175 * 153.86792 * 11 10 9 14 14 C 1.36936 * 120.00557 * 91.47507 * 13 11 10 15 15 H 1.07997 * 119.99693 * 0.02562 * 14 13 11 16 16 C 1.38812 * 120.00250 * 179.72601 * 14 13 11 17 17 N 1.31612 * 120.00126 * 0.27450 * 16 14 13 18 18 Si 1.86799 * 119.99830 * 180.27510 * 16 14 13 19 19 H 1.48505 * 109.46890 * 90.00093 * 18 16 14 20 20 H 1.48497 * 109.47440 * 209.99809 * 18 16 14 21 21 H 1.48496 * 109.47462 * 330.00282 * 18 16 14 22 22 C 1.47019 * 125.64723 * 5.82671 * 8 6 2 23 23 H 1.09003 * 109.88553 * 298.32522 * 22 8 6 24 24 C 1.52996 * 109.88434 * 59.49045 * 22 8 6 25 25 H 1.08999 * 109.47187 * 53.72055 * 1 2 3 26 26 H 1.09001 * 109.46734 * 173.71232 * 1 2 3 27 27 H 1.08993 * 109.47610 * 293.70894 * 1 2 3 28 28 H 1.09002 * 110.36489 * 322.99561 * 9 8 6 29 29 H 1.09001 * 110.37043 * 85.32202 * 9 8 6 30 30 H 1.09004 * 111.00102 * 204.91256 * 10 9 8 31 31 H 1.09003 * 111.00496 * 81.06845 * 10 9 8 32 32 H 0.97002 * 120.00266 * 271.48005 * 13 11 10 33 33 H 0.97006 * 120.00382 * 179.97438 * 17 16 14 34 34 H 1.09000 * 109.47660 * 170.69978 * 24 22 8 35 35 H 1.08999 * 109.47578 * 290.69774 * 24 22 8 36 36 H 1.08999 * 109.47275 * 50.69430 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6937 1.2020 5 7 2.3993 -1.2291 2.1296 6 6 2.0323 -0.7105 -1.2303 7 8 2.6263 -1.7625 -1.1231 8 7 1.8218 -0.1768 -2.4499 9 6 2.1492 -0.8178 -3.7365 10 6 2.3144 0.3561 -4.7337 11 6 1.2123 1.3345 -4.2485 12 1 0.2413 1.0611 -4.6615 13 7 1.5531 2.7150 -4.6005 14 6 1.1210 3.2459 -5.7866 15 1 0.5286 2.6469 -6.4623 16 6 1.4391 4.5559 -6.1175 17 7 2.1607 5.2861 -5.2938 18 14 0.8432 5.2824 -7.7319 19 1 -0.4834 5.9182 -7.5288 20 1 1.8137 6.3024 -8.2040 21 1 0.7253 4.2044 -8.7464 22 6 1.2283 1.1414 -2.7175 23 1 0.2105 1.1755 -2.3289 24 6 2.0748 2.2356 -2.0640 25 1 -0.3633 0.6081 -0.8284 26 1 -0.3633 -1.0215 -0.1126 27 1 -0.3634 0.4132 0.9408 28 1 3.0797 -1.3796 -3.6544 29 1 1.3366 -1.4720 -4.0521 30 1 2.1247 0.0297 -5.7562 31 1 3.3031 0.8069 -4.6462 32 1 2.0849 3.2532 -3.9935 33 1 2.3833 6.2014 -5.5252 34 1 1.7282 3.2127 -2.4003 35 1 1.9799 2.1698 -0.9801 36 1 3.1195 2.1038 -2.3458 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074567903.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:26 Heat of formation + Delta-G solvation = -1.597905 kcal Electronic energy + Delta-G solvation = -18732.655134 eV Core-core repulsion = 15831.024013 eV Total energy + Delta-G solvation = -2901.631121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -41.61155 -39.21231 -37.65949 -35.87665 -34.65818 -33.17818 -31.84997 -30.39629 -26.76758 -26.43316 -25.30630 -23.87418 -21.30050 -20.56305 -19.48588 -18.53792 -18.14312 -17.08089 -16.72509 -16.16746 -16.02399 -15.47142 -15.18781 -14.86051 -14.45805 -14.22196 -13.91501 -13.68512 -13.44550 -13.32778 -13.23684 -13.03048 -12.87892 -12.79275 -12.74522 -12.56046 -12.23460 -11.92733 -11.87069 -11.50710 -11.32950 -10.98691 -10.83772 -9.69997 -8.92973 -7.87923 -5.14780 1.34384 1.41223 1.55099 1.56508 1.63354 1.67297 2.09217 2.63017 2.75815 3.33422 3.44904 3.72321 3.88901 3.93584 3.99922 4.06458 4.25146 4.38179 4.46875 4.64310 4.78536 4.79835 4.83987 4.89969 4.93742 5.16382 5.21739 5.29548 5.32872 5.45606 5.56336 5.63992 6.33804 6.36560 6.50948 6.97053 7.43918 8.17903 8.40628 9.35266 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.040188 B = 0.005053 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.566688 B = 5539.676654 C = 5874.522975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.014 4.014 3 H 0.170 0.830 4 C 0.245 3.755 5 N -0.468 5.468 6 C 0.541 3.459 7 O -0.583 6.583 8 N -0.597 5.597 9 C 0.110 3.890 10 C -0.147 4.147 11 C 0.165 3.835 12 H 0.078 0.922 13 N -0.727 5.727 14 C -0.236 4.236 15 H 0.079 0.921 16 C -0.069 4.069 17 N -0.967 5.967 18 Si 0.963 3.037 19 H -0.288 1.288 20 H -0.304 1.304 21 H -0.271 1.271 22 C 0.119 3.881 23 H 0.116 0.884 24 C -0.171 4.171 25 H 0.104 0.896 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.384 0.616 33 H 0.249 0.751 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.891 -7.548 6.128 11.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.037 4.037 3 H 0.187 0.813 4 C -0.074 4.074 5 N -0.144 5.144 6 C 0.328 3.672 7 O -0.463 6.463 8 N -0.329 5.329 9 C -0.012 4.012 10 C -0.188 4.188 11 C 0.055 3.945 12 H 0.096 0.904 13 N -0.370 5.370 14 C -0.368 4.368 15 H 0.097 0.903 16 C -0.261 4.261 17 N -0.618 5.618 18 Si 0.794 3.206 19 H -0.216 1.216 20 H -0.231 1.231 21 H -0.196 1.196 22 C 0.016 3.984 23 H 0.134 0.866 24 C -0.228 4.228 25 H 0.123 0.877 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.221 0.779 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.086 -8.902 7.478 12.689 hybrid contribution 0.359 0.966 -1.218 1.595 sum -4.727 -7.935 6.260 11.158 Atomic orbital electron populations 1.21942 0.86851 1.04743 1.06557 1.19344 1.01044 1.00768 0.82570 0.81330 1.28666 0.92312 0.92591 0.93795 1.81167 1.09612 1.09609 1.13970 1.19957 0.78741 0.84630 0.83830 1.90748 1.43486 1.25570 1.86537 1.48459 1.60614 1.18831 1.04983 1.22269 1.01354 0.95635 0.81943 1.23408 1.00562 0.95952 0.98921 1.21399 0.96818 0.84702 0.91609 0.90368 1.42864 1.63130 1.09813 1.21232 1.19630 1.25565 0.95096 0.96498 0.90263 1.25387 1.01780 0.97641 1.01337 1.69771 1.44499 1.09081 1.38421 0.85291 0.76937 0.77938 0.80474 1.21563 1.23089 1.19637 1.22122 0.98255 0.81118 0.96925 0.86621 1.22307 0.99837 0.99355 1.01347 0.87725 0.91417 0.88110 0.91580 0.89413 0.90002 0.92882 0.77919 0.94194 0.90818 0.89352 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.00 71.98 0.65 -1.01 16 2 C -0.01 -0.25 2.43 -13.35 -0.03 -0.28 16 3 H 0.17 2.22 4.94 -2.39 -0.01 2.21 16 4 C 0.24 6.09 13.89 89.44 1.24 7.33 16 5 N -0.47 -14.31 18.54 20.01 0.37 -13.94 16 6 C 0.54 13.68 6.88 87.65 0.60 14.28 16 7 O -0.58 -19.94 16.27 -3.04 -0.05 -19.99 16 8 N -0.60 -14.15 3.08 -788.08 -2.43 -16.57 16 9 C 0.11 2.72 6.94 86.86 0.60 3.32 16 10 C -0.15 -4.24 6.77 31.99 0.22 -4.02 16 11 C 0.16 5.03 3.49 46.18 0.16 5.19 16 12 H 0.08 2.29 8.09 -2.39 -0.02 2.27 16 13 N -0.73 -30.42 4.91 -317.36 -1.56 -31.97 16 14 C -0.24 -11.44 9.96 84.03 0.84 -10.60 16 15 H 0.08 3.66 7.83 -2.91 -0.02 3.64 16 16 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 17 N -0.97 -54.22 13.06 21.65 0.28 -53.93 16 18 Si 0.96 42.61 29.55 68.60 2.03 44.64 16 19 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 20 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 22 C 0.12 2.75 2.98 45.34 0.14 2.88 16 23 H 0.12 2.00 5.77 -2.39 -0.01 1.98 16 24 C -0.17 -4.14 8.02 71.98 0.58 -3.57 16 25 H 0.10 0.94 5.50 -2.39 -0.01 0.92 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.10 0.80 8.13 -2.39 -0.02 0.78 16 28 H 0.07 1.76 7.98 -2.39 -0.02 1.74 16 29 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.38 17.12 4.96 -92.71 -0.46 16.67 16 33 H 0.25 13.79 8.31 -92.70 -0.77 13.02 16 34 H 0.07 2.21 6.26 -2.39 -0.01 2.20 16 35 H 0.09 1.45 5.05 -2.39 -0.01 1.44 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -67.07 296.10 4.75 -62.32 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.65 Total: 19.04 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 5.46 Total: 10.41 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -3.33 Total: -116.42 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.05 Total: -19.99 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -67.07 4.75 -62.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074567903.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.726 kcal (2) G-P(sol) polarization free energy of solvation -67.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds