Wall clock time and date at job start Thu Apr 9 2020 12:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 C 1.50699 * 109.47505 * 180.02562 * 13 12 2 15 15 N 1.31188 * 125.97140 * 269.69476 * 14 13 12 16 16 N 1.40412 * 108.29167 * 179.88902 * 15 14 13 17 17 H 0.97000 * 126.11021 * 180.09268 * 16 15 14 18 18 C 1.33946 * 107.77248 * 0.31882 * 16 15 14 19 19 C 1.36067 * 107.91108 * 359.86950 * 18 16 15 20 20 C 1.50826 * 123.05574 * 179.83578 * 19 18 16 21 21 O 1.43426 * 107.95565 * 344.95561 * 20 19 18 22 22 C 1.42991 * 114.40142 * 50.75155 * 21 20 19 23 23 C 1.50889 * 129.25301 * 179.97438 * 18 16 15 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 28 28 H 1.00902 * 110.99927 * 151.04624 * 12 2 1 29 29 H 1.09004 * 109.46925 * 300.00216 * 13 12 2 30 30 H 1.09001 * 109.46797 * 59.99650 * 13 12 2 31 31 H 1.09000 * 109.76544 * 104.55836 * 20 19 18 32 32 H 1.08991 * 109.76367 * 225.33400 * 20 19 18 33 33 H 1.09008 * 109.43490 * 169.03397 * 22 21 20 34 34 H 1.08999 * 109.41058 * 49.13109 * 22 21 20 35 35 H 1.09008 * 109.80971 * 283.69515 * 23 18 16 36 36 H 1.08993 * 109.81852 * 44.53821 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5885 -0.5214 3.5558 15 7 1.8498 -1.1539 4.4363 16 7 2.6998 -1.7153 5.4027 17 1 2.4245 -2.2393 6.1711 18 6 3.9585 -1.3938 5.0764 19 6 3.9189 -0.6525 3.9361 20 6 5.1550 -0.1050 3.2674 21 8 6.2394 -0.1939 4.2018 22 6 6.3997 -1.4829 4.7998 23 6 5.2465 -1.7447 5.7798 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7089 1.1612 -3.4844 28 1 2.9173 -1.1204 1.0288 29 1 2.7588 1.0463 2.1182 30 1 1.0870 0.6164 2.5525 31 1 5.3849 -0.6934 2.3791 32 1 4.9928 0.9362 2.9888 33 1 7.3475 -1.5180 5.3371 34 1 6.3953 -2.2462 4.0217 35 1 5.3654 -1.1208 6.6657 36 1 5.2361 -2.7960 6.0671 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119879325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:55 Heat of formation + Delta-G solvation = 26.136990 kcal Electronic energy + Delta-G solvation = -18389.053735 eV Core-core repulsion = 15488.625289 eV Total energy + Delta-G solvation = -2900.428446 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.50231 -38.10592 -36.02155 -33.43486 -32.26409 -31.26200 -29.97882 -28.45946 -25.45070 -24.95562 -24.45283 -23.75237 -20.00891 -19.66594 -19.13111 -17.71897 -16.45634 -16.28073 -15.71615 -14.88952 -14.72136 -14.56338 -14.24602 -13.70934 -13.36101 -13.28310 -13.21591 -12.54735 -12.23084 -11.83149 -11.51776 -11.12815 -11.11006 -10.87106 -10.75180 -10.42711 -10.26367 -10.09125 -10.00342 -9.85884 -9.17702 -8.78639 -8.46130 -8.24886 -7.26411 -6.00958 -4.07210 1.90208 2.82724 2.86661 3.30301 3.38217 3.42440 3.74844 4.39205 4.42936 4.64900 4.84551 4.97110 5.00890 5.30329 5.33538 5.37365 5.46836 5.53313 5.67361 5.70040 5.77046 6.13761 6.18957 6.29078 6.74565 6.92503 7.06079 7.18770 7.25683 7.34526 7.51883 7.79742 7.85151 7.91844 8.29591 8.39603 8.66840 9.02955 9.58640 11.05428 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.028525 B = 0.005131 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.355296 B = 5456.134795 C = 6042.686574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.004 0.996 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.679 5.679 13 C 0.134 3.866 14 C 0.115 3.885 15 N -0.279 5.279 16 N -0.469 5.469 17 H 0.435 0.565 18 C 0.083 3.917 19 C -0.276 4.276 20 C 0.141 3.859 21 O -0.381 6.381 22 C 0.068 3.932 23 C -0.088 4.088 24 H 0.031 0.969 25 H 0.081 0.919 26 H 0.005 0.995 27 H 0.260 0.740 28 H 0.331 0.669 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.252 -3.746 15.781 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.555 4.555 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.311 5.311 13 C 0.002 3.998 14 C -0.051 4.051 15 N -0.102 5.102 16 N -0.175 5.175 17 H 0.278 0.722 18 C -0.048 4.048 19 C -0.288 4.288 20 C 0.064 3.936 21 O -0.299 6.299 22 C -0.010 4.010 23 C -0.128 4.128 24 H 0.050 0.950 25 H 0.099 0.901 26 H 0.024 0.976 27 H 0.070 0.930 28 H 0.149 0.851 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.459 -4.020 16.167 18.253 hybrid contribution 1.332 -0.310 -0.842 1.606 sum 8.791 -4.331 15.325 18.191 Atomic orbital electron populations 1.21720 0.97764 0.99445 0.99404 1.19143 0.92738 0.92397 0.85224 0.97865 1.21273 1.31406 1.12483 0.90351 0.92176 1.24908 0.95044 0.94996 0.99010 1.69905 1.36624 1.22923 1.23358 0.86470 0.78594 0.79608 0.82890 1.19792 1.21009 1.21079 1.60715 1.32221 1.32743 1.05451 1.20299 1.00375 0.92491 0.86590 1.22083 0.90542 0.96537 0.95955 1.77682 1.15409 1.16107 1.01029 1.45948 1.03644 1.44050 1.23863 0.72209 1.20669 0.87687 0.99185 0.97230 1.20465 0.96237 1.11299 1.00827 1.21012 0.81202 1.01581 0.89834 1.87998 1.51054 1.31128 1.59706 1.22544 0.96985 0.86302 0.95197 1.21053 0.90018 1.02440 0.99257 0.94951 0.90056 0.97584 0.92972 0.85140 0.94019 0.90164 0.91668 0.87943 0.88121 0.92385 0.89145 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 9.19 37.16 0.34 -2.84 16 2 C 0.21 5.41 2.60 -68.87 -0.18 5.23 16 3 H 0.00 0.10 7.80 -51.93 -0.40 -0.30 16 4 C -0.52 -14.17 8.59 -34.44 -0.30 -14.47 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.68 -14.96 6.29 -109.22 -0.69 -15.65 16 13 C 0.13 2.56 5.94 -4.98 -0.03 2.53 16 14 C 0.12 2.04 6.72 -82.59 -0.55 1.48 16 15 N -0.28 -4.91 12.72 33.55 0.43 -4.48 16 16 N -0.47 -6.24 7.33 33.49 0.25 -5.99 16 17 H 0.43 4.11 8.96 -182.36 -1.63 2.47 16 18 C 0.08 1.08 7.20 -82.36 -0.59 0.48 16 19 C -0.28 -4.22 6.01 -105.06 -0.63 -4.85 16 20 C 0.14 1.93 7.12 36.07 0.26 2.19 16 21 O -0.38 -4.85 10.74 -35.23 -0.38 -5.23 16 22 C 0.07 0.63 6.79 37.46 0.25 0.88 16 23 C -0.09 -0.77 6.56 -27.49 -0.18 -0.95 16 24 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 26 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.33 7.12 8.22 -39.29 -0.32 6.80 16 29 H 0.04 0.76 8.04 -51.93 -0.42 0.34 16 30 H 0.08 1.59 7.44 -51.93 -0.39 1.20 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.09 0.69 8.14 -51.92 -0.42 0.26 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 298.13 15.07 4.49 4.49 Total: -1.00 -31.66 298.13 -8.36 -40.02 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.36 Total: 4.04 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -1.71 Total: -8.69 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.61 Total: -50.88 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.38 Total: -5.23 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.66 -8.36 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119879325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.156 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds