Wall clock time and date at job start Thu Apr 9 2020 12:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 C 1.50699 * 109.47505 * 180.02562 * 13 12 2 15 15 N 1.31188 * 125.97140 * 269.69476 * 14 13 12 16 16 N 1.40412 * 108.29167 * 179.88902 * 15 14 13 17 17 H 0.97000 * 126.11021 * 180.09268 * 16 15 14 18 18 C 1.33946 * 107.77248 * 0.31882 * 16 15 14 19 19 C 1.36067 * 107.91108 * 359.86950 * 18 16 15 20 20 C 1.50826 * 123.05574 * 179.83578 * 19 18 16 21 21 O 1.43426 * 107.95565 * 344.95561 * 20 19 18 22 22 C 1.42991 * 114.40142 * 50.75155 * 21 20 19 23 23 C 1.50889 * 129.25301 * 179.97438 * 18 16 15 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 28 28 H 1.00902 * 110.99927 * 151.04624 * 12 2 1 29 29 H 1.09004 * 109.46925 * 300.00216 * 13 12 2 30 30 H 1.09001 * 109.46797 * 59.99650 * 13 12 2 31 31 H 1.09000 * 109.76544 * 104.55836 * 20 19 18 32 32 H 1.08991 * 109.76367 * 225.33400 * 20 19 18 33 33 H 1.09008 * 109.43490 * 169.03397 * 22 21 20 34 34 H 1.08999 * 109.41058 * 49.13109 * 22 21 20 35 35 H 1.09008 * 109.80971 * 283.69515 * 23 18 16 36 36 H 1.08993 * 109.81852 * 44.53821 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5885 -0.5214 3.5558 15 7 1.8498 -1.1539 4.4363 16 7 2.6998 -1.7153 5.4027 17 1 2.4245 -2.2393 6.1711 18 6 3.9585 -1.3938 5.0764 19 6 3.9189 -0.6525 3.9361 20 6 5.1550 -0.1050 3.2674 21 8 6.2394 -0.1939 4.2018 22 6 6.3997 -1.4829 4.7998 23 6 5.2465 -1.7447 5.7798 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7089 1.1612 -3.4844 28 1 2.9173 -1.1204 1.0288 29 1 2.7588 1.0463 2.1182 30 1 1.0870 0.6164 2.5525 31 1 5.3849 -0.6934 2.3791 32 1 4.9928 0.9362 2.9888 33 1 7.3475 -1.5180 5.3371 34 1 6.3953 -2.2462 4.0217 35 1 5.3654 -1.1208 6.6657 36 1 5.2361 -2.7960 6.0671 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119879325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:54 Heat of formation + Delta-G solvation = 2.405179 kcal Electronic energy + Delta-G solvation = -18390.082824 eV Core-core repulsion = 15488.625289 eV Total energy + Delta-G solvation = -2901.457535 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.62262 -39.04424 -37.83566 -35.03365 -33.67192 -32.50112 -31.10250 -30.19388 -27.45674 -26.25030 -25.95848 -24.57418 -21.84015 -21.11144 -20.20960 -18.77479 -18.44769 -17.17698 -16.99502 -16.58925 -16.06270 -15.67864 -15.55824 -15.25330 -14.88206 -14.56534 -14.25694 -14.02690 -13.68356 -13.34459 -12.98716 -12.81266 -12.67492 -12.40672 -12.24960 -12.19546 -11.97292 -11.87031 -11.52936 -10.91328 -10.79551 -10.57223 -10.35092 -9.36629 -9.08956 -8.11642 -6.25616 0.80328 1.43323 1.45117 1.55519 1.58194 1.84579 2.43832 2.88682 3.17313 3.44823 3.68374 3.80680 3.91978 4.06405 4.26014 4.33731 4.48936 4.54388 4.58171 4.69397 4.78114 4.84484 4.95033 4.97399 5.09231 5.18034 5.20916 5.44880 5.51217 5.67836 5.84829 6.17727 6.21804 6.39425 6.45012 6.65697 6.74487 6.98088 7.44487 8.94498 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.028525 B = 0.005131 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.355296 B = 5456.134795 C = 6042.686574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.217 3.783 3 H -0.021 1.021 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.278 1.278 12 N -0.678 5.678 13 C 0.140 3.860 14 C 0.097 3.903 15 N -0.317 5.317 16 N -0.453 5.453 17 H 0.452 0.548 18 C 0.099 3.901 19 C -0.301 4.301 20 C 0.145 3.855 21 O -0.393 6.393 22 C 0.057 3.943 23 C -0.082 4.082 24 H 0.024 0.976 25 H 0.060 0.940 26 H 0.019 0.981 27 H 0.263 0.737 28 H 0.334 0.666 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.134 0.866 34 H 0.057 0.943 35 H 0.110 0.890 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.933 -5.154 17.092 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.109 3.891 3 H -0.004 1.004 4 C -0.573 4.573 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.204 1.204 12 N -0.310 5.310 13 C 0.009 3.991 14 C -0.068 4.068 15 N -0.142 5.142 16 N -0.161 5.161 17 H 0.299 0.701 18 C -0.033 4.033 19 C -0.313 4.313 20 C 0.068 3.932 21 O -0.312 6.312 22 C -0.020 4.020 23 C -0.121 4.121 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.152 0.848 34 H 0.076 0.924 35 H 0.128 0.872 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.138 -5.440 17.508 20.485 hybrid contribution 0.840 0.103 -1.115 1.400 sum 9.978 -5.338 16.393 19.919 Atomic orbital electron populations 1.21559 0.97904 0.98715 0.99059 1.18945 0.92608 0.91183 0.86365 1.00359 1.21552 1.31705 1.12661 0.91429 0.92321 1.25714 0.95124 0.95658 1.01972 1.70024 1.37386 1.24060 1.24163 0.85425 0.78067 0.78598 0.79011 1.19141 1.20746 1.20410 1.60597 1.32416 1.33070 1.04938 1.20146 0.99976 0.92488 0.86491 1.21806 0.91842 0.97435 0.95731 1.77560 1.16994 1.17350 1.02288 1.45917 1.03490 1.43247 1.23490 0.70140 1.21333 0.88793 0.96943 0.96225 1.20674 0.95651 1.12723 1.02279 1.20879 0.81243 1.01118 0.89998 1.87980 1.50336 1.33281 1.59600 1.22896 0.98783 0.84780 0.95521 1.21267 0.86849 1.04896 0.99094 0.95673 0.92109 0.96150 0.92782 0.84886 0.93461 0.91390 0.92105 0.88555 0.84833 0.92440 0.87176 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.94 9.19 71.98 0.66 -5.28 16 2 C 0.22 11.36 2.60 44.17 0.11 11.47 16 3 H -0.02 -1.19 7.80 -2.39 -0.02 -1.21 16 4 C -0.54 -29.73 8.59 25.60 0.22 -29.51 16 5 H 0.06 3.20 7.62 -2.91 -0.02 3.18 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -53.05 11.32 21.45 0.24 -52.80 16 8 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 9 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 N -0.68 -30.54 6.29 -499.47 -3.14 -33.68 16 13 C 0.14 5.51 5.94 85.56 0.51 6.02 16 14 C 0.10 3.44 6.72 42.83 0.29 3.73 16 15 N -0.32 -11.04 12.72 -47.76 -0.61 -11.64 16 16 N -0.45 -11.15 7.33 -47.95 -0.35 -11.50 16 17 H 0.45 7.36 8.96 -213.12 -1.91 5.45 16 18 C 0.10 2.33 7.20 41.79 0.30 2.63 16 19 C -0.30 -8.97 6.01 -20.15 -0.12 -9.09 16 20 C 0.15 3.92 7.12 71.28 0.51 4.43 16 21 O -0.39 -9.29 10.74 -148.98 -1.60 -10.89 16 22 C 0.06 0.87 6.79 72.18 0.49 1.35 16 23 C -0.08 -1.08 6.56 30.11 0.20 -0.89 16 24 H 0.02 1.28 8.14 -2.39 -0.02 1.27 16 25 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 26 H 0.02 0.95 7.45 -2.38 -0.02 0.93 16 27 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.33 14.63 8.22 -89.69 -0.74 13.89 16 29 H 0.05 1.79 8.04 -2.39 -0.02 1.77 16 30 H 0.07 2.79 7.44 -2.39 -0.02 2.77 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.06 0.89 8.09 -2.39 -0.02 0.87 16 35 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -68.54 298.13 -1.36 -69.90 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -1.54 Total: 18.83 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 3.62 Total: -13.87 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -3.86 Total: -109.63 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.60 Total: -10.89 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -68.54 -1.36 -69.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119879325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.308 kcal (2) G-P(sol) polarization free energy of solvation -68.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds