Wall clock time and date at job start Thu Apr 9 2020 12:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47116 * 60.00382 * 8 6 4 10 10 H 1.48503 * 109.46756 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47119 * 300.00049 * 8 6 4 12 12 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 13 13 C 1.46892 * 111.00363 * 85.00189 * 12 2 1 14 14 C 1.50698 * 109.47411 * 179.97438 * 13 12 2 15 15 N 1.31188 * 125.97569 * 269.68420 * 14 13 12 16 16 N 1.40408 * 108.29463 * 179.88921 * 15 14 13 17 17 H 0.97001 * 126.11050 * 180.10423 * 16 15 14 18 18 C 1.33937 * 107.77103 * 0.32692 * 16 15 14 19 19 C 1.36066 * 107.91619 * 359.86493 * 18 16 15 20 20 C 1.50828 * 123.05610 * 179.83565 * 19 18 16 21 21 O 1.43412 * 107.95764 * 344.95192 * 20 19 18 22 22 C 1.42996 * 114.40440 * 50.76086 * 21 20 19 23 23 C 1.50904 * 129.25250 * 179.97438 * 18 16 15 24 24 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 28 28 H 1.00902 * 110.99496 * 208.95308 * 12 2 1 29 29 H 1.08999 * 109.46953 * 300.00101 * 13 12 2 30 30 H 1.09001 * 109.47256 * 59.99520 * 13 12 2 31 31 H 1.08999 * 109.76292 * 104.56220 * 20 19 18 32 32 H 1.09005 * 109.76040 * 225.33201 * 20 19 18 33 33 H 1.08998 * 109.44471 * 169.03058 * 22 21 20 34 34 H 1.08996 * 109.41211 * 49.11858 * 22 21 20 35 35 H 1.08997 * 109.80758 * 283.69956 * 23 18 16 36 36 H 1.08998 * 109.81287 * 44.53751 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8077 -1.1190 4.0077 10 1 1.8280 -0.4193 5.2204 11 1 1.8282 -2.5198 4.0081 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2225 -2.3469 14 6 2.5884 -0.5216 -3.5558 15 7 3.8436 -0.6405 -3.9179 16 7 3.8927 -1.4083 -5.0925 17 1 4.6935 -1.6552 -5.5810 18 6 2.6357 -1.7345 -5.4204 19 6 1.8062 -1.1967 -4.4854 20 6 0.3067 -1.3536 -4.5282 21 8 -0.0525 -1.8141 -5.8380 22 6 0.6846 -2.9547 -6.2860 23 6 2.1339 -2.5464 -6.5892 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7091 1.1614 3.4844 28 1 2.9173 -1.1205 -1.0288 29 1 1.0871 0.6163 -2.5525 30 1 2.7588 1.0461 -2.1183 31 1 -0.0090 -2.0825 -3.7818 32 1 -0.1701 -0.3933 -4.3314 33 1 0.2233 -3.3527 -7.1898 34 1 0.6779 -3.7186 -5.5086 35 1 2.1662 -1.9449 -7.4977 36 1 2.7512 -3.4361 -6.7132 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119879326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:58 Heat of formation + Delta-G solvation = 25.827742 kcal Electronic energy + Delta-G solvation = -18386.483619 eV Core-core repulsion = 15486.041763 eV Total energy + Delta-G solvation = -2900.441856 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.48581 -38.06540 -36.00577 -33.41876 -32.24042 -31.24987 -29.96815 -28.43500 -25.46688 -24.90399 -24.45507 -23.71619 -19.96389 -19.61423 -19.14299 -17.75331 -16.41884 -16.21310 -15.66761 -14.92301 -14.67524 -14.45279 -14.08431 -13.96442 -13.56174 -13.27142 -13.02160 -12.39159 -12.16404 -11.81432 -11.48500 -11.13764 -11.08055 -10.85685 -10.76756 -10.52916 -10.20749 -10.12199 -10.02380 -9.80410 -9.18448 -8.80511 -8.44756 -8.20704 -7.27496 -6.00286 -4.06399 1.90235 2.84343 2.86522 3.33524 3.37553 3.40767 3.80674 4.41208 4.44085 4.67600 4.85494 5.00327 5.05207 5.30929 5.40447 5.41437 5.51685 5.58145 5.62782 5.80797 5.83841 6.18532 6.24067 6.29249 6.75493 6.90410 7.12758 7.16145 7.23797 7.35045 7.51145 7.79638 7.83098 7.91743 8.29107 8.38955 8.66443 9.02965 9.59174 11.06066 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.034363 B = 0.004773 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.629487 B = 5865.023007 C = 6169.456981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.680 5.680 13 C 0.135 3.865 14 C 0.115 3.885 15 N -0.295 5.295 16 N -0.469 5.469 17 H 0.434 0.566 18 C 0.079 3.921 19 C -0.260 4.260 20 C 0.143 3.857 21 O -0.383 6.383 22 C 0.068 3.932 23 C -0.088 4.088 24 H 0.081 0.919 25 H 0.005 0.995 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.334 0.666 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 -5.825 -17.798 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.556 4.556 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.312 5.312 13 C 0.003 3.997 14 C -0.051 4.051 15 N -0.119 5.119 16 N -0.175 5.175 17 H 0.278 0.722 18 C -0.051 4.051 19 C -0.272 4.272 20 C 0.066 3.934 21 O -0.301 6.301 22 C -0.010 4.010 23 C -0.127 4.127 24 H 0.099 0.901 25 H 0.024 0.976 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.151 0.849 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.455 -5.538 -17.621 18.528 hybrid contribution 1.149 -0.374 0.779 1.437 sum 2.604 -5.913 -16.842 18.039 Atomic orbital electron populations 1.21721 0.97683 0.99425 0.99449 1.19139 0.92716 0.92433 0.85255 0.97929 1.21202 1.31509 1.12533 0.90404 0.92320 1.24900 0.95044 0.94988 0.98974 1.69880 1.36593 1.22813 1.23566 0.86581 0.79077 0.79766 0.82084 1.20373 1.21295 1.20218 1.60771 1.32461 1.32519 1.05441 1.20308 0.99613 0.92853 0.86905 1.22104 0.89685 0.96837 0.96486 1.77622 1.19933 1.15603 0.98703 1.45850 1.06475 1.43008 1.22123 0.72234 1.20696 0.85694 1.00369 0.98383 1.20401 0.97718 1.09899 0.99193 1.21005 0.88619 1.00337 0.83446 1.87988 1.60995 1.47035 1.34090 1.22527 0.89614 0.88586 1.00259 1.21051 0.98096 0.98878 0.94678 0.90063 0.97563 0.94883 0.92867 0.84897 0.89793 0.94503 0.91224 0.87966 0.88201 0.92396 0.89204 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 9.19 37.16 0.34 -2.72 16 2 C 0.21 5.39 2.60 -68.86 -0.18 5.21 16 3 H 0.00 0.08 7.80 -51.93 -0.40 -0.32 16 4 C -0.52 -14.34 8.59 -34.44 -0.30 -14.63 16 5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.68 -14.92 6.29 -109.22 -0.69 -15.61 16 13 C 0.13 2.57 5.94 -4.98 -0.03 2.54 16 14 C 0.11 2.03 6.72 -82.59 -0.55 1.48 16 15 N -0.29 -5.10 12.72 33.55 0.43 -4.68 16 16 N -0.47 -6.21 7.33 33.49 0.25 -5.96 16 17 H 0.43 4.09 8.96 -182.36 -1.63 2.46 16 18 C 0.08 1.04 7.20 -82.35 -0.59 0.44 16 19 C -0.26 -4.05 6.01 -105.06 -0.63 -4.69 16 20 C 0.14 2.03 7.12 36.07 0.26 2.28 16 21 O -0.38 -4.97 10.74 -35.23 -0.38 -5.34 16 22 C 0.07 0.64 6.79 37.46 0.25 0.90 16 23 C -0.09 -0.77 6.56 -27.48 -0.18 -0.95 16 24 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 25 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.33 7.51 8.22 -39.29 -0.32 7.18 16 29 H 0.08 1.53 7.42 -51.93 -0.39 1.14 16 30 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 298.14 15.07 4.49 4.49 Total: -1.00 -31.25 298.14 -8.36 -39.61 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.36 Total: 4.37 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -1.71 Total: -8.49 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.61 Total: -51.06 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.38 Total: -5.34 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.25 -8.36 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119879326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.437 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds