Wall clock time and date at job start Thu Apr 9 2020 12:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47116 * 60.00382 * 8 6 4 10 10 H 1.48503 * 109.46756 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47119 * 300.00049 * 8 6 4 12 12 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 13 13 C 1.46892 * 111.00363 * 85.00189 * 12 2 1 14 14 C 1.50698 * 109.47411 * 179.97438 * 13 12 2 15 15 N 1.31188 * 125.97569 * 269.68420 * 14 13 12 16 16 N 1.40408 * 108.29463 * 179.88921 * 15 14 13 17 17 H 0.97001 * 126.11050 * 180.10423 * 16 15 14 18 18 C 1.33937 * 107.77103 * 0.32692 * 16 15 14 19 19 C 1.36066 * 107.91619 * 359.86493 * 18 16 15 20 20 C 1.50828 * 123.05610 * 179.83565 * 19 18 16 21 21 O 1.43412 * 107.95764 * 344.95192 * 20 19 18 22 22 C 1.42996 * 114.40440 * 50.76086 * 21 20 19 23 23 C 1.50904 * 129.25250 * 179.97438 * 18 16 15 24 24 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 28 28 H 1.00902 * 110.99496 * 208.95308 * 12 2 1 29 29 H 1.08999 * 109.46953 * 300.00101 * 13 12 2 30 30 H 1.09001 * 109.47256 * 59.99520 * 13 12 2 31 31 H 1.08999 * 109.76292 * 104.56220 * 20 19 18 32 32 H 1.09005 * 109.76040 * 225.33201 * 20 19 18 33 33 H 1.08998 * 109.44471 * 169.03058 * 22 21 20 34 34 H 1.08996 * 109.41211 * 49.11858 * 22 21 20 35 35 H 1.08997 * 109.80758 * 283.69956 * 23 18 16 36 36 H 1.08998 * 109.81287 * 44.53751 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8077 -1.1190 4.0077 10 1 1.8280 -0.4193 5.2204 11 1 1.8282 -2.5198 4.0081 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2225 -2.3469 14 6 2.5884 -0.5216 -3.5558 15 7 3.8436 -0.6405 -3.9179 16 7 3.8927 -1.4083 -5.0925 17 1 4.6935 -1.6552 -5.5810 18 6 2.6357 -1.7345 -5.4204 19 6 1.8062 -1.1967 -4.4854 20 6 0.3067 -1.3536 -4.5282 21 8 -0.0525 -1.8141 -5.8380 22 6 0.6846 -2.9547 -6.2860 23 6 2.1339 -2.5464 -6.5892 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7091 1.1614 3.4844 28 1 2.9173 -1.1205 -1.0288 29 1 1.0871 0.6163 -2.5525 30 1 2.7588 1.0461 -2.1183 31 1 -0.0090 -2.0825 -3.7818 32 1 -0.1701 -0.3933 -4.3314 33 1 0.2233 -3.3527 -7.1898 34 1 0.6779 -3.7186 -5.5086 35 1 2.1662 -1.9449 -7.4977 36 1 2.7512 -3.4361 -6.7132 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119879326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:58 Heat of formation + Delta-G solvation = 2.419647 kcal Electronic energy + Delta-G solvation = -18387.498670 eV Core-core repulsion = 15486.041763 eV Total energy + Delta-G solvation = -2901.456907 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.61532 -39.02193 -37.82073 -35.02901 -33.66745 -32.48252 -31.13141 -30.13401 -27.44725 -26.25367 -25.93554 -24.55161 -21.82497 -21.03758 -20.22822 -18.85761 -18.39317 -17.14439 -16.88384 -16.69300 -15.87927 -15.80236 -15.47966 -15.30066 -15.05807 -14.53659 -14.20966 -13.98338 -13.55315 -13.19844 -13.04883 -12.76102 -12.70923 -12.51487 -12.19736 -12.16545 -11.96072 -11.85697 -11.58739 -10.91663 -10.76984 -10.56793 -10.36050 -9.33879 -9.11762 -8.12305 -6.26342 0.78890 1.43012 1.44848 1.52367 1.58331 1.83752 2.42833 2.92573 3.16238 3.45133 3.65871 3.88017 3.91271 4.07773 4.20957 4.36037 4.56042 4.57416 4.65039 4.69682 4.81752 4.85503 4.98599 5.00667 5.12265 5.19676 5.23342 5.47372 5.52185 5.66446 5.86886 6.21682 6.23452 6.38152 6.42539 6.64008 6.71212 6.94609 7.43391 8.93182 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.034363 B = 0.004773 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.629487 B = 5865.023007 C = 6169.456981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.216 3.784 3 H -0.028 1.028 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.672 5.672 13 C 0.141 3.859 14 C 0.096 3.904 15 N -0.329 5.329 16 N -0.452 5.452 17 H 0.452 0.548 18 C 0.096 3.904 19 C -0.288 4.288 20 C 0.148 3.852 21 O -0.394 6.394 22 C 0.057 3.943 23 C -0.082 4.082 24 H 0.058 0.942 25 H 0.027 0.973 26 H 0.029 0.971 27 H 0.263 0.737 28 H 0.329 0.671 29 H 0.090 0.910 30 H 0.024 0.976 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.134 0.866 34 H 0.055 0.945 35 H 0.110 0.890 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.491 -7.485 -19.500 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 H -0.010 1.010 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.196 1.196 12 N -0.303 5.303 13 C 0.010 3.990 14 C -0.069 4.069 15 N -0.154 5.154 16 N -0.160 5.160 17 H 0.299 0.701 18 C -0.036 4.036 19 C -0.300 4.300 20 C 0.071 3.929 21 O -0.313 6.313 22 C -0.020 4.020 23 C -0.120 4.120 24 H 0.077 0.923 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.146 0.854 29 H 0.108 0.892 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.152 0.848 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.851 -7.204 -19.347 20.728 hybrid contribution 1.065 0.114 1.170 1.587 sum 2.916 -7.090 -18.177 19.727 Atomic orbital electron populations 1.21530 0.97028 0.99108 0.99374 1.18970 0.93192 0.90805 0.86273 1.01031 1.21508 1.31909 1.12740 0.91673 0.92661 1.25693 0.95119 0.95658 1.01879 1.70004 1.37256 1.23863 1.24295 0.85553 0.78579 0.78719 0.78393 1.19891 1.20681 1.19618 1.60695 1.32055 1.32643 1.04941 1.20186 0.99785 0.92260 0.86773 1.21820 0.90514 0.97975 0.96547 1.77512 1.19928 1.17249 1.00728 1.45837 1.07610 1.41660 1.20926 0.70131 1.21353 0.84871 0.98833 0.98562 1.20622 0.98687 1.10910 0.99802 1.20840 0.87927 1.00004 0.84126 1.87971 1.61819 1.48392 1.33110 1.22881 0.90104 0.87425 1.01542 1.21265 0.97777 0.99791 0.93213 0.92349 0.95357 0.95133 0.92735 0.85442 0.89229 0.95807 0.92270 0.88384 0.84834 0.92614 0.87154 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.61 9.19 71.98 0.66 -4.94 16 2 C 0.22 11.29 2.60 44.17 0.11 11.41 16 3 H -0.03 -1.60 7.80 -2.39 -0.02 -1.62 16 4 C -0.54 -30.41 8.59 25.60 0.22 -30.19 16 5 H 0.06 3.08 7.62 -2.91 -0.02 3.05 16 6 C 0.02 0.90 5.30 84.66 0.45 1.35 16 7 N -0.92 -53.10 11.32 21.45 0.24 -52.85 16 8 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 N -0.67 -30.26 6.29 -499.48 -3.14 -33.40 16 13 C 0.14 5.55 5.94 85.56 0.51 6.06 16 14 C 0.10 3.41 6.72 42.83 0.29 3.70 16 15 N -0.33 -11.28 12.72 -47.76 -0.61 -11.89 16 16 N -0.45 -11.07 7.33 -47.95 -0.35 -11.42 16 17 H 0.45 7.30 8.96 -213.12 -1.91 5.39 16 18 C 0.10 2.28 7.20 41.80 0.30 2.58 16 19 C -0.29 -8.74 6.01 -20.15 -0.12 -8.86 16 20 C 0.15 4.13 7.12 71.28 0.51 4.64 16 21 O -0.39 -9.47 10.74 -148.98 -1.60 -11.07 16 22 C 0.06 0.90 6.79 72.18 0.49 1.39 16 23 C -0.08 -1.10 6.56 30.11 0.20 -0.90 16 24 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 25 H 0.03 1.24 7.45 -2.39 -0.02 1.22 16 26 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.33 15.22 8.22 -89.69 -0.74 14.48 16 29 H 0.09 3.35 7.42 -2.39 -0.02 3.34 16 30 H 0.02 0.99 8.06 -2.39 -0.02 0.97 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 33 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 0.91 8.09 -2.39 -0.02 0.89 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -68.04 298.14 -1.36 -69.40 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -1.54 Total: 18.91 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 3.62 Total: -13.77 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -3.86 Total: -109.57 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -1.60 Total: -11.07 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -68.04 -1.36 -69.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119879326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.820 kcal (2) G-P(sol) polarization free energy of solvation -68.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds