Wall clock time and date at job start Thu Apr 9 2020 12:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47264 * 2 1 4 4 N 1.46501 * 109.46929 * 180.02562 * 3 2 1 5 5 C 1.34257 * 125.75897 * 125.00224 * 4 3 2 6 6 C 1.38037 * 107.42081 * 179.97438 * 5 4 3 7 7 C 1.47428 * 126.41638 * 179.97438 * 6 5 4 8 8 O 1.21602 * 120.00240 * 180.02562 * 7 6 5 9 9 N 1.34773 * 119.99961 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00012 * 180.02562 * 9 7 6 11 11 C 1.50705 * 109.47023 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99892 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99602 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00513 * 359.97438 * 13 11 10 15 15 Si 1.86810 * 119.99574 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47224 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47354 * 119.99908 * 15 13 11 18 18 H 1.48500 * 109.46489 * 239.99752 * 15 13 11 19 19 C 1.41295 * 107.17157 * 359.97438 * 6 5 4 20 20 C 1.50697 * 125.99163 * 179.73687 * 19 6 5 21 21 N 1.30444 * 108.01985 * 0.02562 * 19 6 5 22 22 H 1.08995 * 109.47735 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47022 * 300.00877 * 1 2 3 24 24 H 1.09005 * 109.46888 * 59.99777 * 1 2 3 25 25 H 1.09000 * 109.47129 * 239.99862 * 2 1 3 26 26 H 1.09005 * 109.46877 * 119.99668 * 2 1 3 27 27 H 1.09000 * 109.47160 * 59.99881 * 3 2 1 28 28 H 1.09005 * 109.46903 * 299.99652 * 3 2 1 29 29 H 1.08002 * 126.28642 * 359.97438 * 5 4 3 30 30 H 0.97000 * 120.00135 * 359.97438 * 9 7 6 31 31 H 1.09000 * 109.47052 * 299.99090 * 10 9 7 32 32 H 1.09000 * 109.47565 * 59.99816 * 10 9 7 33 33 H 0.96998 * 119.99991 * 180.02562 * 14 13 11 34 34 H 1.08997 * 109.47277 * 90.00006 * 20 19 6 35 35 H 1.08997 * 109.47543 * 210.00347 * 20 19 6 36 36 H 1.09009 * 109.46976 * 330.00007 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2892 2.0674 -0.8933 6 6 5.5996 1.8187 -0.5378 7 6 6.8034 2.3065 -1.2353 8 8 7.9079 2.0144 -0.8187 9 7 6.6798 3.0761 -2.3347 10 6 7.8759 3.5604 -3.0282 11 6 7.4657 4.3917 -4.2164 12 1 6.4188 4.5437 -4.4335 13 6 8.4272 4.9581 -5.0262 14 7 9.7021 4.7735 -4.7616 15 14 7.9187 5.9892 -6.4987 16 1 6.4368 6.0438 -6.5768 17 1 8.4580 7.3647 -6.3498 18 1 8.4572 5.3781 -7.7404 19 6 5.5713 1.0090 0.6198 20 6 6.7726 0.4828 1.3621 21 7 4.3230 0.7916 0.9298 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 1.6767 1.9564 0.8900 28 1 1.6767 1.9563 -0.8901 29 1 3.9560 2.6566 -1.7349 30 1 5.7988 3.3088 -2.6673 31 1 8.4698 4.1690 -2.3463 32 1 8.4686 2.7106 -3.3669 33 1 10.3784 5.1723 -5.3311 34 1 7.0670 1.1980 2.1302 35 1 6.5226 -0.4697 1.8293 36 1 7.5972 0.3396 0.6637 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120641723.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:00 Heat of formation + Delta-G solvation = -6.714335 kcal Electronic energy + Delta-G solvation = -17770.690476 eV Core-core repulsion = 14868.837490 eV Total energy + Delta-G solvation = -2901.852986 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.41877 -39.96142 -36.48305 -36.04547 -34.37237 -33.44139 -31.57782 -29.74645 -29.07216 -26.67184 -24.85395 -23.27813 -22.61647 -21.22373 -20.64394 -19.14276 -17.99083 -17.00186 -16.87053 -16.74670 -16.10060 -15.83222 -15.47126 -15.17115 -14.66275 -14.42650 -14.02385 -13.97064 -13.79668 -13.60822 -13.03771 -12.99972 -12.84505 -12.80373 -12.72609 -12.26530 -12.18320 -11.94153 -11.60544 -11.41591 -10.78287 -10.72382 -10.33080 -9.92283 -9.49886 -8.25521 -6.41884 0.55265 1.12803 1.41956 1.45994 1.47274 1.60434 2.36318 2.55439 2.69950 3.09759 3.33252 3.73294 3.91509 3.91867 4.12766 4.27655 4.40191 4.51693 4.53952 4.55998 4.75766 4.81030 4.95974 5.00532 5.14181 5.18769 5.19439 5.29815 5.37759 5.51385 5.57246 5.74778 5.88853 5.94078 6.55575 6.69290 7.00929 7.27279 7.56481 8.87111 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.024438 B = 0.004547 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.463845 B = 6155.982914 C = 7205.949809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.120 3.880 4 N -0.352 5.352 5 C 0.121 3.879 6 C -0.315 4.315 7 C 0.575 3.425 8 O -0.600 6.600 9 N -0.704 5.704 10 C 0.268 3.732 11 C -0.553 4.553 12 H 0.087 0.913 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.986 3.014 16 H -0.250 1.250 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.113 3.887 20 C -0.072 4.072 21 N -0.317 5.317 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.134 0.866 29 H 0.222 0.778 30 H 0.405 0.595 31 H -0.013 1.013 32 H -0.013 1.013 33 H 0.268 0.732 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.073 -6.079 7.463 23.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.001 3.999 4 N -0.130 5.130 5 C -0.031 4.031 6 C -0.330 4.330 7 C 0.364 3.636 8 O -0.483 6.483 9 N -0.353 5.353 10 C 0.145 3.855 11 C -0.591 4.591 12 H 0.105 0.895 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.809 3.191 16 H -0.174 1.174 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.053 4.053 20 C -0.131 4.131 21 N -0.140 5.140 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.118 0.882 28 H 0.152 0.848 29 H 0.239 0.761 30 H 0.241 0.759 31 H 0.005 0.995 32 H 0.005 0.995 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.113 -6.806 8.507 23.759 hybrid contribution 0.825 0.915 -1.324 1.808 sum -20.288 -5.891 7.184 22.314 Atomic orbital electron populations 1.21676 0.92434 1.02923 1.03167 1.21744 0.97922 0.94857 1.02512 1.22390 0.71016 0.99921 1.06535 1.48811 1.07963 1.36802 1.19418 1.23580 0.89143 0.95212 0.95203 1.20270 0.93037 1.15239 1.04418 1.17843 0.88049 0.77750 0.79998 1.90658 1.29068 1.60639 1.67947 1.45962 1.10889 1.50903 1.27527 1.18546 0.83463 0.92549 0.90894 1.21651 0.94567 1.32125 1.10718 0.89548 1.26081 0.94519 0.97632 1.01483 1.70153 1.01352 1.45303 1.40260 0.85100 0.79347 0.77411 0.77266 1.17353 1.20611 1.20621 1.22649 0.94028 0.94819 0.93847 1.20266 0.91981 1.01381 0.99465 1.77027 1.00851 1.21278 1.14843 0.91938 0.91556 0.90996 0.92250 0.92309 0.88169 0.84831 0.76130 0.75906 0.99455 0.99469 0.92319 0.89990 0.89377 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.91 71.98 0.71 -0.43 16 2 C -0.13 -1.72 6.11 30.59 0.19 -1.54 16 3 C 0.12 1.52 6.49 86.38 0.56 2.08 16 4 N -0.35 -7.96 3.65 -346.29 -1.26 -9.22 16 5 C 0.12 2.94 10.94 84.27 0.92 3.86 16 6 C -0.31 -10.81 6.13 -20.15 -0.12 -10.93 16 7 C 0.57 25.25 7.81 86.66 0.68 25.93 16 8 O -0.60 -31.38 14.92 -4.04 -0.06 -31.44 16 9 N -0.70 -30.71 5.54 -470.11 -2.60 -33.32 16 10 C 0.27 14.93 5.43 85.63 0.46 15.39 16 11 C -0.55 -29.89 9.28 25.60 0.24 -29.65 16 12 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 13 C 0.00 0.12 5.46 84.66 0.46 0.59 16 14 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 15 Si 0.99 41.88 29.54 68.60 2.03 43.90 16 16 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 17 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 19 C 0.11 3.75 7.26 43.52 0.32 4.07 16 20 C -0.07 -2.21 9.91 71.23 0.71 -1.51 16 21 N -0.32 -9.31 12.33 -46.68 -0.58 -9.88 16 22 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 23 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 24 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.13 0.80 8.06 -2.38 -0.02 0.78 16 29 H 0.22 3.36 7.46 -2.91 -0.02 3.34 16 30 H 0.41 14.12 7.24 -92.71 -0.67 13.45 16 31 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 32 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 33 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 2.59 6.56 -2.38 -0.02 2.58 16 Total: -1.00 -76.88 311.98 3.34 -73.54 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.41 Total: 14.67 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.12 Total: 7.86 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -4.16 Total: -108.53 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.06 Total: -31.44 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -76.88 3.34 -73.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120641723.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.827 kcal (2) G-P(sol) polarization free energy of solvation -76.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds