Wall clock time and date at job start Thu Apr 9 2020 12:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47506 * 2 1 4 4 N 1.46498 * 109.47502 * 180.02562 * 3 2 1 5 5 N 1.39938 * 125.74934 * 269.69198 * 4 3 2 6 6 C 1.30442 * 108.91318 * 179.80723 * 5 4 3 7 7 C 1.41322 * 108.02822 * 0.44453 * 6 5 4 8 8 C 1.47353 * 126.42289 * 179.69443 * 7 6 5 9 9 O 1.21633 * 119.99869 * 169.61493 * 8 7 6 10 10 N 1.34773 * 120.00114 * 349.61863 * 8 7 6 11 11 C 1.46500 * 119.99765 * 359.97438 * 10 8 7 12 12 C 1.36983 * 119.99946 * 179.97438 * 10 8 7 13 13 H 1.07995 * 119.99965 * 24.99894 * 12 10 8 14 14 C 1.38978 * 119.99892 * 204.99103 * 12 10 8 15 15 N 1.31408 * 119.99810 * 17.95192 * 14 12 10 16 16 Si 1.86803 * 119.99914 * 197.94942 * 14 12 10 17 17 H 1.48503 * 109.46816 * 95.02470 * 16 14 12 18 18 H 1.48497 * 109.47047 * 215.02253 * 16 14 12 19 19 H 1.48504 * 109.47279 * 335.02367 * 16 14 12 20 20 C 1.34288 * 125.75326 * 89.99595 * 4 3 2 21 21 C 1.50703 * 126.29449 * 359.97438 * 20 4 3 22 22 H 1.09005 * 109.46930 * 300.00171 * 1 2 3 23 23 H 1.08996 * 109.47490 * 60.00016 * 1 2 3 24 24 H 1.08997 * 109.47326 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46923 * 120.00054 * 2 1 3 26 26 H 1.09005 * 109.46930 * 239.99829 * 2 1 3 27 27 H 1.09005 * 109.47074 * 299.99962 * 3 2 1 28 28 H 1.09001 * 109.47427 * 59.99553 * 3 2 1 29 29 H 1.07992 * 125.98815 * 180.18109 * 6 5 4 30 30 H 1.08995 * 109.46937 * 83.68882 * 11 10 8 31 31 H 1.09001 * 109.46868 * 203.68654 * 11 10 8 32 32 H 1.08993 * 109.46927 * 323.68341 * 11 10 8 33 33 H 0.97001 * 119.99452 * 179.97438 * 15 14 12 34 34 H 1.09004 * 109.46985 * 90.00016 * 21 20 4 35 35 H 1.09005 * 109.46344 * 209.99746 * 21 20 4 36 36 H 1.08997 * 109.47145 * 329.99453 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 7 4.3231 1.4483 1.1347 6 6 5.5714 1.4422 0.7564 7 6 5.6003 1.4424 -0.6565 8 6 6.8035 1.4429 -1.5070 9 8 6.7022 1.2531 -2.7042 10 7 8.0164 1.6536 -0.9585 11 6 8.1384 1.8826 0.4834 12 6 9.1351 1.6535 -1.7491 13 1 9.0536 1.8893 -2.7998 14 6 10.3748 1.3503 -1.1989 15 7 10.4465 0.7312 -0.0420 16 14 11.9391 1.8228 -2.1040 17 1 12.4295 3.1292 -1.5959 18 1 12.9750 0.7832 -1.8779 19 1 11.6561 1.9318 -3.5578 20 6 4.2892 1.4425 -1.0908 21 6 3.8241 1.4420 -2.5242 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 6.4321 1.4418 1.4086 30 1 8.1631 0.9246 1.0026 31 1 9.0583 2.4304 0.6877 32 1 7.2846 2.4633 0.8325 33 1 11.3118 0.5192 0.3417 34 1 3.7116 2.4696 -2.8700 35 1 4.5588 0.9283 -3.1443 36 1 2.8657 0.9278 -2.5951 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120688190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:04 Heat of formation + Delta-G solvation = 53.803694 kcal Electronic energy + Delta-G solvation = -18592.954425 eV Core-core repulsion = 15693.725697 eV Total energy + Delta-G solvation = -2899.228728 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.95191 -37.94260 -35.37909 -34.64974 -32.20484 -31.52661 -30.73668 -27.32484 -26.64021 -25.72536 -24.44050 -22.14248 -21.30817 -20.04916 -18.28107 -17.01256 -16.43077 -15.63727 -15.14071 -14.94620 -14.39029 -14.16079 -13.87004 -13.74463 -13.20285 -12.78696 -12.56337 -12.45545 -12.27633 -12.16717 -11.69850 -11.67082 -11.48302 -11.25735 -11.10183 -11.01464 -10.55746 -10.30100 -10.24461 -10.15171 -8.93469 -8.90105 -8.29931 -7.93775 -7.55293 -6.28895 -3.78880 2.10050 2.73145 2.88805 3.24697 3.29679 3.35579 4.19428 4.51318 4.53709 4.67570 4.88773 4.96724 5.07140 5.14891 5.25242 5.27556 5.44453 5.45951 5.55568 5.74887 5.84034 5.87756 5.97825 6.05742 6.10835 6.29801 6.36074 6.60792 6.83267 7.01744 7.15876 7.35938 7.63202 8.08414 8.26300 8.58918 9.27523 9.51276 10.13018 10.77496 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.048058 B = 0.005076 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.490715 B = 5514.491421 C = 5896.025969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.133 3.867 4 N -0.371 5.371 5 N -0.315 5.315 6 C 0.056 3.944 7 C -0.257 4.257 8 C 0.522 3.478 9 O -0.595 6.595 10 N -0.438 5.438 11 C 0.095 3.905 12 C -0.304 4.304 13 H 0.099 0.901 14 C 0.031 3.969 15 N -0.876 5.876 16 Si 0.923 3.077 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.269 1.269 20 C 0.126 3.874 21 C -0.093 4.093 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.208 0.792 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.267 0.733 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.869 1.361 2.323 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.012 3.988 4 N -0.153 5.153 5 N -0.135 5.135 6 C -0.130 4.130 7 C -0.271 4.271 8 C 0.311 3.689 9 O -0.481 6.481 10 N -0.155 5.155 11 C -0.048 4.048 12 C -0.432 4.432 13 H 0.117 0.883 14 C -0.173 4.173 15 N -0.515 5.515 16 Si 0.750 3.250 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.193 1.193 20 C -0.004 4.004 21 C -0.151 4.151 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.224 0.776 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.128 0.872 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.658 1.218 2.886 15.968 hybrid contribution 1.449 0.099 -0.701 1.613 sum -14.209 1.317 2.185 14.436 Atomic orbital electron populations 1.21690 0.94506 1.02326 1.02052 1.21950 0.96387 0.96170 1.03617 1.21685 0.74932 0.98174 1.04056 1.48376 1.05935 1.57281 1.03685 1.77065 1.02214 1.26503 1.07705 1.25185 0.95150 0.97410 0.95241 1.20456 0.93644 1.19470 0.93516 1.17041 0.82281 0.82581 0.86977 1.90524 1.86077 1.56161 1.15343 1.43297 1.05005 1.60266 1.06933 1.22011 1.00106 1.00085 0.82641 1.19636 0.83760 1.45090 0.94743 0.88332 1.25328 0.99540 0.95596 0.96808 1.70023 1.25709 1.36794 1.18950 0.85963 0.80959 0.78107 0.80005 1.20474 1.21044 1.19295 1.21380 0.90294 0.98169 0.90569 1.20593 1.01847 1.03285 0.89381 0.92373 0.92391 0.92087 0.90902 0.91227 0.89257 0.88925 0.77648 0.92743 0.91084 0.93774 0.92290 0.90568 0.87167 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.14 -1.43 6.26 -26.74 -0.17 -1.60 16 3 C 0.13 1.50 6.03 -4.05 -0.02 1.47 16 4 N -0.37 -6.06 3.58 -56.58 -0.20 -6.26 16 5 N -0.31 -5.79 12.50 30.87 0.39 -5.40 16 6 C 0.06 1.09 9.86 -16.97 -0.17 0.92 16 7 C -0.26 -5.57 5.95 -105.06 -0.62 -6.19 16 8 C 0.52 13.53 7.61 -12.55 -0.10 13.44 16 9 O -0.59 -16.73 14.55 5.25 0.08 -16.66 16 10 N -0.44 -11.63 3.00 -123.45 -0.37 -12.00 16 11 C 0.10 2.17 7.03 59.85 0.42 2.59 16 12 C -0.30 -8.64 9.19 -14.98 -0.14 -8.78 16 13 H 0.10 2.91 7.49 -52.49 -0.39 2.52 16 14 C 0.03 0.83 4.90 -17.46 -0.09 0.74 16 15 N -0.88 -23.73 11.21 55.50 0.62 -23.10 16 16 Si 0.92 20.87 29.59 -169.99 -5.03 15.84 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 C 0.13 2.33 7.01 -81.56 -0.57 1.75 16 21 C -0.09 -1.43 9.46 36.01 0.34 -1.09 16 22 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.09 0.82 7.62 -51.93 -0.40 0.42 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.21 3.72 4.53 -52.49 -0.24 3.48 16 30 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 31 H 0.07 1.68 6.86 -51.93 -0.36 1.32 16 32 H 0.04 0.87 4.89 -51.93 -0.25 0.62 16 33 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.11 2.02 6.35 -51.93 -0.33 1.69 16 36 H 0.06 0.71 7.70 -51.93 -0.40 0.31 16 LS Contribution 297.06 15.07 4.48 4.48 Total: -1.00 -32.81 297.06 -5.63 -38.44 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.84 Total: 2.10 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -0.74 Total: 2.56 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.44 Total: -46.76 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.08 Total: -16.66 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.81 -5.63 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120688190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.245 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds