Wall clock time and date at job start Thu Apr 9 2020 12:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47473 * 180.02562 * 3 2 1 5 5 N 1.39935 * 125.75459 * 269.69426 * 4 3 2 6 6 C 1.30445 * 108.89588 * 179.84530 * 5 4 3 7 7 C 1.41294 * 108.02622 * 0.40636 * 6 5 4 8 8 C 1.47423 * 126.41955 * 179.71856 * 7 6 5 9 9 O 1.21603 * 120.00057 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99883 * 0.02826 * 8 7 6 11 11 C 1.46497 * 119.99934 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.46917 * 179.97438 * 11 10 8 13 13 H 1.07997 * 120.00571 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99745 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99696 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00161 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.47063 * 90.00507 * 16 14 12 18 18 H 1.48507 * 109.47461 * 210.00291 * 16 14 12 19 19 H 1.48502 * 109.47374 * 330.00397 * 16 14 12 20 20 C 1.34257 * 125.75382 * 90.00013 * 4 3 2 21 21 C 1.50707 * 126.29183 * 359.95729 * 20 4 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.07999 * 125.99405 * 180.16772 * 6 5 4 30 30 H 0.97002 * 119.99846 * 359.97438 * 10 8 7 31 31 H 1.09001 * 109.46714 * 299.99678 * 11 10 8 32 32 H 1.09000 * 109.47453 * 59.99665 * 11 10 8 33 33 H 0.97005 * 120.00086 * 179.97438 * 15 14 12 34 34 H 1.09002 * 109.47196 * 89.99968 * 21 20 4 35 35 H 1.08999 * 109.47138 * 210.00189 * 21 20 4 36 36 H 1.09006 * 109.46939 * 330.00183 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 7 4.3231 1.4485 1.1346 6 6 5.5713 1.4433 0.7558 7 6 5.5996 1.4432 -0.6568 8 6 6.8031 1.4441 -1.5082 9 8 6.6913 1.4444 -2.7191 10 7 8.0273 1.4444 -0.9445 11 6 9.2233 1.4458 -1.7905 12 6 10.4539 1.4466 -0.9206 13 1 10.3551 1.4465 0.1549 14 6 11.7061 1.4485 -1.4978 15 7 12.7800 1.4497 -0.7386 16 14 11.8772 1.4493 -3.3578 17 1 11.9208 2.8496 -3.8503 18 1 13.1309 0.7510 -3.7400 19 1 10.7160 0.7480 -3.9621 20 6 4.2890 1.4428 -1.0905 21 6 3.8238 1.4421 -2.5240 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 6.4325 1.4434 1.4076 30 1 8.1165 1.4445 0.0215 31 1 9.2237 0.5562 -2.4204 32 1 9.2227 2.3362 -2.4192 33 1 13.6610 1.4506 -1.1446 34 1 3.7110 2.4696 -2.8699 35 1 4.5585 0.9286 -3.1441 36 1 2.8654 0.9276 -2.5947 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120728364.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:07 Heat of formation + Delta-G solvation = 19.848149 kcal Electronic energy + Delta-G solvation = -17905.412333 eV Core-core repulsion = 15004.711183 eV Total energy + Delta-G solvation = -2900.701151 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.36609 -38.39640 -35.66586 -34.25832 -32.54626 -32.15635 -31.27874 -28.42640 -26.83574 -26.42513 -22.87967 -22.31781 -21.48698 -19.93456 -19.41737 -17.59690 -16.49144 -15.83722 -15.54154 -15.24716 -14.90129 -14.33009 -14.21518 -14.04581 -13.55630 -13.10049 -12.95280 -12.75055 -12.58200 -12.43005 -12.23708 -12.07445 -12.05486 -11.70520 -11.24953 -10.97164 -10.72931 -10.69483 -9.92417 -9.44120 -9.35312 -9.14985 -8.73038 -8.51463 -7.97413 -6.16756 -4.18391 1.66300 2.31751 2.39963 3.30414 3.37000 3.45657 4.02233 4.11057 4.35873 4.38828 4.43053 4.59499 4.73682 4.83167 4.95754 5.08401 5.15993 5.18805 5.26258 5.46891 5.53411 5.57494 5.62656 5.71015 5.80710 5.96562 6.18692 6.53402 6.89611 6.92098 7.14644 7.32759 7.46777 7.64212 8.22334 8.61941 8.81794 9.06390 9.43957 10.95319 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.047987 B = 0.004178 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.351056 B = 6700.531724 C = 7122.629828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.130 3.870 4 N -0.366 5.366 5 N -0.304 5.304 6 C 0.084 3.916 7 C -0.286 4.286 8 C 0.580 3.420 9 O -0.567 6.567 10 N -0.701 5.701 11 C 0.222 3.778 12 C -0.542 4.542 13 H 0.080 0.920 14 C 0.077 3.923 15 N -0.894 5.894 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.260 1.260 20 C 0.148 3.852 21 C -0.097 4.097 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.191 0.809 30 H 0.395 0.605 31 H 0.025 0.975 32 H 0.021 0.979 33 H 0.267 0.733 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.239 -0.976 0.860 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.009 3.991 4 N -0.146 5.146 5 N -0.123 5.123 6 C -0.104 4.104 7 C -0.300 4.300 8 C 0.367 3.633 9 O -0.448 6.448 10 N -0.348 5.348 11 C 0.100 3.900 12 C -0.580 4.580 13 H 0.098 0.902 14 C -0.127 4.127 15 N -0.531 5.531 16 Si 0.703 3.297 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.184 1.184 20 C 0.017 3.983 21 C -0.155 4.155 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.208 0.792 30 H 0.229 0.771 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.011 -0.966 1.018 24.051 hybrid contribution 0.932 0.032 -0.922 1.311 sum -23.079 -0.934 0.095 23.098 Atomic orbital electron populations 1.21694 0.94231 1.02542 1.02203 1.21951 0.96686 0.95789 1.03680 1.21811 0.74171 0.98577 1.04563 1.48461 1.06383 1.56291 1.03466 1.77122 1.01916 1.25721 1.07490 1.24094 0.95237 0.96863 0.94165 1.20261 0.93306 1.22812 0.93629 1.17246 0.82524 0.76670 0.86900 1.90662 1.86942 1.52943 1.14259 1.45953 1.05548 1.72648 1.10696 1.19473 0.82333 0.96759 0.91406 1.21115 0.88894 1.53044 0.94929 0.90229 1.24797 0.95469 0.93936 0.98475 1.69885 0.98022 1.49656 1.35556 0.86813 0.78176 0.79014 0.85661 1.19886 1.20992 1.18434 1.21478 0.90182 0.95756 0.90926 1.20661 1.02177 1.03916 0.88773 0.91917 0.92247 0.92294 0.90781 0.91180 0.88856 0.88507 0.79237 0.77149 0.95681 0.96145 0.92322 0.89825 0.87340 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.14 -1.06 6.26 -26.73 -0.17 -1.23 16 3 C 0.13 1.09 6.03 -4.04 -0.02 1.07 16 4 N -0.37 -4.68 3.58 -56.60 -0.20 -4.89 16 5 N -0.30 -4.47 12.50 30.86 0.39 -4.08 16 6 C 0.08 1.25 11.50 -16.98 -0.20 1.06 16 7 C -0.29 -4.80 6.13 -105.07 -0.64 -5.44 16 8 C 0.58 11.82 7.81 -12.52 -0.10 11.72 16 9 O -0.57 -12.93 14.84 5.27 0.08 -12.86 16 10 N -0.70 -14.85 5.54 -62.57 -0.35 -15.20 16 11 C 0.22 5.57 4.50 -5.20 -0.02 5.55 16 12 C -0.54 -15.04 9.83 -34.44 -0.34 -15.38 16 13 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 14 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 15 N -0.89 -26.77 13.96 55.43 0.77 -25.99 16 16 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 20 C 0.15 2.12 7.01 -81.60 -0.57 1.55 16 21 C -0.10 -1.14 9.34 36.01 0.34 -0.80 16 22 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 0.59 7.62 -51.93 -0.40 0.19 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.19 2.35 7.50 -52.49 -0.39 1.96 16 30 H 0.39 7.41 7.28 -40.82 -0.30 7.11 16 31 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 32 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 33 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.11 1.53 6.50 -51.93 -0.34 1.20 16 36 H 0.07 0.56 7.70 -51.93 -0.40 0.16 16 LS Contribution 306.93 15.07 4.63 4.63 Total: -1.00 -33.61 306.93 -5.94 -39.55 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.13 Total: 2.14 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.45 Total: -0.23 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.61 Total: -50.16 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.61 -5.94 -39.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120728364.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.394 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds