Wall clock time and date at job start Thu Apr 9 2020 12:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47473 * 180.02562 * 3 2 1 5 5 N 1.39935 * 125.75459 * 269.69426 * 4 3 2 6 6 C 1.30445 * 108.89588 * 179.84530 * 5 4 3 7 7 C 1.41294 * 108.02622 * 0.40636 * 6 5 4 8 8 C 1.47423 * 126.41955 * 179.71856 * 7 6 5 9 9 O 1.21603 * 120.00057 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99883 * 0.02826 * 8 7 6 11 11 C 1.46497 * 119.99934 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.46917 * 179.97438 * 11 10 8 13 13 H 1.07997 * 120.00571 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99745 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99696 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00161 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.47063 * 90.00507 * 16 14 12 18 18 H 1.48507 * 109.47461 * 210.00291 * 16 14 12 19 19 H 1.48502 * 109.47374 * 330.00397 * 16 14 12 20 20 C 1.34257 * 125.75382 * 90.00013 * 4 3 2 21 21 C 1.50707 * 126.29183 * 359.95729 * 20 4 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.07999 * 125.99405 * 180.16772 * 6 5 4 30 30 H 0.97002 * 119.99846 * 359.97438 * 10 8 7 31 31 H 1.09001 * 109.46714 * 299.99678 * 11 10 8 32 32 H 1.09000 * 109.47453 * 59.99665 * 11 10 8 33 33 H 0.97005 * 120.00086 * 179.97438 * 15 14 12 34 34 H 1.09002 * 109.47196 * 89.99968 * 21 20 4 35 35 H 1.08999 * 109.47138 * 210.00189 * 21 20 4 36 36 H 1.09006 * 109.46939 * 330.00183 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 7 4.3231 1.4485 1.1346 6 6 5.5713 1.4433 0.7558 7 6 5.5996 1.4432 -0.6568 8 6 6.8031 1.4441 -1.5082 9 8 6.6913 1.4444 -2.7191 10 7 8.0273 1.4444 -0.9445 11 6 9.2233 1.4458 -1.7905 12 6 10.4539 1.4466 -0.9206 13 1 10.3551 1.4465 0.1549 14 6 11.7061 1.4485 -1.4978 15 7 12.7800 1.4497 -0.7386 16 14 11.8772 1.4493 -3.3578 17 1 11.9208 2.8496 -3.8503 18 1 13.1309 0.7510 -3.7400 19 1 10.7160 0.7480 -3.9621 20 6 4.2890 1.4428 -1.0905 21 6 3.8238 1.4421 -2.5240 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 6.4325 1.4434 1.4076 30 1 8.1165 1.4445 0.0215 31 1 9.2237 0.5562 -2.4204 32 1 9.2227 2.3362 -2.4192 33 1 13.6610 1.4506 -1.1446 34 1 3.7110 2.4696 -2.8699 35 1 4.5585 0.9286 -3.1441 36 1 2.8654 0.9276 -2.5947 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120728364.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:07 Heat of formation + Delta-G solvation = -3.836873 kcal Electronic energy + Delta-G solvation = -17906.439393 eV Core-core repulsion = 15004.711183 eV Total energy + Delta-G solvation = -2901.728210 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.49376 -40.01642 -36.41190 -36.11797 -34.39435 -33.36562 -32.31414 -30.15575 -28.12949 -27.24702 -24.54485 -23.16062 -22.90109 -21.26883 -20.68335 -19.22346 -18.14439 -17.11746 -16.65394 -16.59580 -16.19895 -15.82815 -15.75564 -15.23361 -14.78860 -14.34743 -14.25050 -14.12129 -13.91152 -13.62490 -13.27575 -13.06580 -12.99156 -12.88811 -12.66860 -12.29346 -11.96465 -11.88825 -11.67757 -11.62606 -10.89008 -10.78465 -10.37007 -9.99650 -9.52361 -8.37110 -6.44005 0.50574 1.14673 1.35793 1.36439 1.38407 1.50907 2.31304 2.52060 2.60159 2.98587 3.48612 3.59518 3.85439 3.92441 4.00976 4.19963 4.25088 4.46863 4.52065 4.58122 4.64948 4.77965 4.82820 4.96090 5.07796 5.11525 5.12084 5.15577 5.29199 5.36263 5.42314 5.58615 5.92857 6.12917 6.51458 6.57121 6.92351 7.18840 7.46666 8.77783 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.047987 B = 0.004178 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.351056 B = 6700.531724 C = 7122.629828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.118 3.882 4 N -0.355 5.355 5 N -0.317 5.317 6 C 0.084 3.916 7 C -0.321 4.321 8 C 0.582 3.418 9 O -0.595 6.595 10 N -0.704 5.704 11 C 0.235 3.765 12 C -0.547 4.547 13 H 0.058 0.942 14 C 0.025 3.975 15 N -0.933 5.933 16 Si 0.939 3.061 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.258 1.258 20 C 0.158 3.842 21 C -0.095 4.095 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.123 0.877 28 H 0.107 0.893 29 H 0.206 0.794 30 H 0.405 0.595 31 H 0.014 0.986 32 H 0.013 0.987 33 H 0.272 0.728 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.664 -0.784 0.019 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C -0.001 4.001 4 N -0.135 5.135 5 N -0.136 5.136 6 C -0.103 4.103 7 C -0.336 4.336 8 C 0.371 3.629 9 O -0.478 6.478 10 N -0.352 5.352 11 C 0.112 3.888 12 C -0.585 4.585 13 H 0.076 0.924 14 C -0.175 4.175 15 N -0.572 5.572 16 Si 0.763 3.237 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.182 1.182 20 C 0.025 3.975 21 C -0.153 4.153 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.141 0.859 28 H 0.125 0.875 29 H 0.222 0.778 30 H 0.240 0.760 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -26.481 -0.774 0.220 26.493 hybrid contribution 1.551 -0.037 -0.578 1.656 sum -24.929 -0.811 -0.358 24.945 Atomic orbital electron populations 1.21670 0.92207 1.03045 1.03235 1.21895 0.98289 0.94773 1.02577 1.22305 0.71478 0.99702 1.06587 1.48826 1.07783 1.54448 1.02438 1.77091 1.01927 1.26029 1.08566 1.24329 0.95986 0.96360 0.93666 1.20046 0.92901 1.26516 0.94099 1.17664 0.82950 0.75385 0.86923 1.90635 1.87383 1.54215 1.15615 1.45795 1.05059 1.73439 1.10934 1.19089 0.82832 0.95772 0.91124 1.21308 0.90213 1.52542 0.94396 0.92391 1.25623 0.95160 0.93557 1.03173 1.69990 0.98705 1.50839 1.37649 0.85826 0.78424 0.79491 0.79973 1.18929 1.19877 1.18223 1.21825 0.89650 0.93714 0.92358 1.20722 1.03167 1.04909 0.86481 0.91730 0.91667 0.90824 0.92656 0.91579 0.85936 0.87461 0.77786 0.75971 0.96778 0.96884 0.91877 0.88485 0.89827 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.91 71.98 0.71 -0.33 16 2 C -0.14 -1.69 6.26 30.59 0.19 -1.50 16 3 C 0.12 1.61 6.03 86.38 0.52 2.13 16 4 N -0.36 -8.32 3.58 -333.00 -1.19 -9.51 16 5 N -0.32 -8.90 12.50 -56.27 -0.70 -9.60 16 6 C 0.08 2.45 11.50 85.65 0.99 3.44 16 7 C -0.32 -10.61 6.13 -20.15 -0.12 -10.73 16 8 C 0.58 23.78 7.81 86.66 0.68 24.46 16 9 O -0.60 -27.27 14.84 -4.04 -0.06 -27.33 16 10 N -0.70 -30.17 5.54 -470.12 -2.60 -32.78 16 11 C 0.24 11.89 4.50 85.63 0.38 12.28 16 12 C -0.55 -30.87 9.83 25.60 0.25 -30.62 16 13 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 14 C 0.02 1.43 5.47 84.66 0.46 1.89 16 15 N -0.93 -56.51 13.96 21.45 0.30 -56.22 16 16 Si 0.94 44.54 27.47 68.60 1.88 46.42 16 17 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.26 -12.07 6.54 99.48 0.65 -11.42 16 20 C 0.16 4.27 7.01 42.14 0.30 4.56 16 21 C -0.09 -2.00 9.34 71.24 0.67 -1.33 16 22 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 23 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 24 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.12 1.00 7.62 -2.39 -0.02 0.98 16 28 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.21 5.01 7.50 -2.91 -0.02 4.99 16 30 H 0.40 15.47 7.28 -92.71 -0.67 14.79 16 31 H 0.01 0.75 7.20 -2.39 -0.02 0.74 16 32 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 33 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 34 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 2.28 6.50 -2.39 -0.02 2.26 16 36 H 0.10 1.37 7.70 -2.38 -0.02 1.35 16 Total: -1.00 -72.58 306.93 3.00 -69.58 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.35 Total: 15.20 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 5.03 Total: 4.24 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -4.20 Total: -108.11 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.06 Total: -27.33 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Total: -72.58 3.00 -69.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120728364.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.740 kcal (2) G-P(sol) polarization free energy of solvation -72.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds