Wall clock time and date at job start Thu Apr 9 2020 12:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.46966 * 2 1 4 4 C 1.35519 * 116.99553 * 180.02562 * 3 2 1 5 5 C 1.39440 * 120.45753 * 180.02562 * 4 3 2 6 6 C 1.38201 * 118.49939 * 179.97438 * 5 4 3 7 7 N 1.32455 * 119.27212 * 359.74717 * 6 5 4 8 8 C 1.32468 * 120.89038 * 0.50844 * 7 6 5 9 9 N 1.38388 * 119.19218 * 179.75730 * 8 7 6 10 10 C 1.46499 * 120.00029 * 359.73427 * 9 8 7 11 11 H 1.08996 * 109.47509 * 34.99397 * 10 9 8 12 12 C 1.50702 * 109.47375 * 154.99953 * 10 9 8 13 13 H 1.08000 * 120.00247 * 95.21429 * 12 10 9 14 14 C 1.37878 * 119.99564 * 275.21045 * 12 10 9 15 15 N 1.31508 * 120.00333 * 355.34421 * 14 12 10 16 16 Si 1.86801 * 119.99561 * 175.33945 * 14 12 10 17 17 H 1.48501 * 109.47197 * 90.00548 * 16 14 12 18 18 H 1.48500 * 109.46853 * 210.00346 * 16 14 12 19 19 H 1.48494 * 109.47283 * 330.00216 * 16 14 12 20 20 C 1.53009 * 109.46852 * 274.99625 * 10 9 8 21 21 C 1.52995 * 109.46925 * 65.73549 * 20 10 9 22 22 N 1.32489 * 121.61886 * 359.48138 * 8 7 6 23 23 H 1.08994 * 109.47422 * 60.00072 * 1 2 3 24 24 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47236 * 300.00134 * 1 2 3 26 26 H 1.08995 * 109.47394 * 239.99785 * 2 1 3 27 27 H 1.09008 * 109.47311 * 119.99818 * 2 1 3 28 28 H 1.07994 * 120.75479 * 359.95554 * 5 4 3 29 29 H 1.08002 * 120.36175 * 180.02562 * 6 5 4 30 30 H 0.97002 * 120.00131 * 179.72667 * 9 8 7 31 31 H 0.97004 * 119.99870 * 5.27134 * 15 14 12 32 32 H 1.08993 * 109.46761 * 185.73941 * 20 10 9 33 33 H 1.08999 * 109.46836 * 305.73734 * 20 10 9 34 34 H 1.09003 * 109.47564 * 300.00340 * 21 20 10 35 35 H 1.09007 * 109.47058 * 60.00119 * 21 20 10 36 36 H 1.09003 * 109.47286 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3498 1.5248 -0.0005 5 6 3.8931 2.8090 0.0000 6 6 5.2686 2.9431 -0.0001 7 7 6.0253 1.8560 0.0045 8 6 5.4808 0.6484 -0.0010 9 7 6.3047 -0.4635 -0.0010 10 6 7.7602 -0.2967 -0.0009 11 1 8.0253 0.5810 0.5885 12 6 8.4059 -1.5188 0.5995 13 1 8.7589 -2.3131 -0.0415 14 6 8.5462 -1.6228 1.9672 15 7 8.2007 -0.6178 2.7419 16 14 9.2267 -3.1912 2.7196 17 1 10.7044 -3.0888 2.8255 18 1 8.6457 -3.3837 4.0726 19 1 8.8711 -4.3480 1.8591 20 6 8.2526 -0.1137 -1.4380 21 6 7.7103 1.2023 -1.9992 22 7 4.1668 0.4789 -0.0010 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.2535 3.6792 0.0001 29 1 5.7215 3.9236 0.0007 30 1 5.9186 -1.3533 -0.0010 31 1 7.7767 0.1662 2.3592 32 1 9.3423 -0.0916 -1.4486 33 1 7.9000 -0.9429 -2.0512 34 1 6.6206 1.1803 -1.9885 35 1 8.0630 2.0316 -1.3859 36 1 8.0615 1.3330 -3.0228 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:29:15 Heat of formation + Delta-G solvation = 5.272376 kcal Electronic energy + Delta-G solvation = -18673.698727 eV Core-core repulsion = 15772.365523 eV Total energy + Delta-G solvation = -2901.333204 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -40.52177 -38.37170 -36.17694 -32.94159 -32.64624 -31.93422 -30.90364 -29.32840 -26.44893 -24.22486 -23.26886 -22.44821 -22.27835 -20.10738 -18.17387 -17.83154 -16.62690 -16.16045 -15.55079 -14.85843 -14.66273 -14.24961 -13.85378 -13.76420 -13.47093 -13.20798 -12.90371 -12.55181 -12.42930 -12.30849 -11.56290 -11.07647 -10.95132 -10.84374 -10.74812 -10.58008 -10.25907 -10.21517 -10.00306 -9.65183 -9.03156 -8.81415 -8.60567 -8.42715 -7.06688 -6.58051 -4.39903 1.82986 1.93268 3.16989 3.33198 3.36635 3.53012 3.87333 4.37312 4.57821 4.79453 5.02210 5.06507 5.18750 5.29563 5.46559 5.63001 5.74729 5.82437 5.82700 5.94816 6.00795 6.04728 6.06495 6.23828 6.62085 6.70192 6.83769 6.95916 7.05522 7.27083 7.41947 7.68246 7.76874 8.10572 8.25644 8.53400 8.68524 9.18978 9.41207 10.78831 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.021050 B = 0.006474 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.837354 B = 4323.855359 C = 5030.460243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 O -0.309 6.309 4 C 0.397 3.603 5 C -0.337 4.337 6 C 0.210 3.790 7 N -0.575 5.575 8 C 0.594 3.406 9 N -0.661 5.661 10 C 0.249 3.751 11 H 0.062 0.938 12 C -0.607 4.607 13 H 0.057 0.943 14 C 0.033 3.967 15 N -0.886 5.886 16 Si 1.072 2.928 17 H -0.284 1.284 18 H -0.284 1.284 19 H -0.286 1.286 20 C -0.117 4.117 21 C -0.135 4.135 22 N -0.640 5.640 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.135 0.865 29 H 0.163 0.837 30 H 0.397 0.603 31 H 0.278 0.722 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.058 0.942 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.578 3.404 -5.607 11.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.214 6.214 4 C 0.208 3.792 5 C -0.365 4.365 6 C 0.042 3.958 7 N -0.303 5.303 8 C 0.238 3.762 9 N -0.292 5.292 10 C 0.150 3.850 11 H 0.080 0.920 12 C -0.646 4.646 13 H 0.075 0.925 14 C -0.177 4.177 15 N -0.519 5.519 16 Si 0.899 3.101 17 H -0.211 1.211 18 H -0.209 1.209 19 H -0.212 1.212 20 C -0.157 4.157 21 C -0.193 4.193 22 N -0.381 5.381 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.153 0.847 29 H 0.180 0.820 30 H 0.234 0.766 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.518 2.055 -4.166 9.702 hybrid contribution -1.308 0.841 -1.449 2.125 sum -9.825 2.896 -5.615 11.681 Atomic orbital electron populations 1.21808 0.93325 1.02671 1.03025 1.22563 0.94303 0.81417 1.02760 1.86183 1.17389 1.30460 1.87383 1.19681 0.83285 0.89756 0.86494 1.21266 0.96938 0.95681 1.22637 1.22653 0.89022 0.97148 0.86977 1.68250 1.39526 0.97614 1.24867 1.19579 0.83424 0.87909 0.85321 1.46856 1.06952 1.03414 1.72016 1.19035 0.74893 0.98835 0.92252 0.91979 1.22176 1.42281 1.05802 0.94366 0.92465 1.26032 0.94896 1.02546 0.94210 1.70716 1.35526 1.06146 1.39490 0.83512 0.76524 0.74179 0.75864 1.21077 1.20928 1.21189 1.21828 0.99915 0.95771 0.98140 1.21830 1.00405 0.98909 0.98127 1.67553 1.05233 1.34251 1.31110 0.91855 0.90482 0.91785 0.91693 0.91542 0.84716 0.82030 0.76618 0.90982 0.92182 0.93908 0.93859 0.92284 0.95518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.15 0.38 -1.13 16 2 C 0.07 0.90 6.06 37.15 0.23 1.12 16 3 O -0.31 -5.05 10.13 -18.25 -0.18 -5.23 16 4 C 0.40 7.33 7.53 -16.72 -0.13 7.21 16 5 C -0.34 -5.54 10.12 -39.15 -0.40 -5.93 16 6 C 0.21 3.54 11.29 -17.30 -0.20 3.35 16 7 N -0.58 -11.85 6.39 -14.00 -0.09 -11.94 16 8 C 0.59 13.00 7.02 -322.87 -2.27 10.74 16 9 N -0.66 -15.17 5.16 -56.93 -0.29 -15.46 16 10 C 0.25 6.04 1.95 -69.08 -0.13 5.91 16 11 H 0.06 1.67 6.04 -51.93 -0.31 1.36 16 12 C -0.61 -15.96 8.50 -34.44 -0.29 -16.25 16 13 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 14 C 0.03 0.89 5.45 -17.82 -0.10 0.79 16 15 N -0.89 -25.81 13.62 55.43 0.76 -25.06 16 16 Si 1.07 23.91 29.91 -169.99 -5.08 18.83 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 20 C -0.12 -2.51 5.58 -26.73 -0.15 -2.66 16 21 C -0.14 -2.62 8.45 37.16 0.31 -2.30 16 22 N -0.64 -13.16 9.40 -13.99 -0.13 -13.29 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 27 H 0.07 0.98 8.12 -51.92 -0.42 0.56 16 28 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 29 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.40 9.02 8.71 -40.82 -0.36 8.67 16 31 H 0.28 8.29 6.66 -40.82 -0.27 8.02 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.04 0.88 5.58 -51.93 -0.29 0.59 16 35 H 0.06 1.15 7.70 -51.93 -0.40 0.75 16 36 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 301.86 15.07 4.55 4.55 Total: -1.00 -29.39 301.86 -8.28 -37.67 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.06 Total: 9.09 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -2.74 Total: 0.85 kcal Atomic # 7 Polarization: -65.99 SS G_CDS: 0.24 Total: -65.75 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.18 Total: -5.23 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.08 Total: 18.83 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.39 -8.28 -37.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.940 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds