Wall clock time and date at job start Thu Apr 9 2020 12:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.47088 * 2 1 4 4 C 1.35451 * 116.99892 * 180.02562 * 3 2 1 5 5 N 1.32321 * 119.15630 * 0.02562 * 4 3 2 6 6 C 1.32508 * 120.94743 * 180.02562 * 5 4 3 7 7 C 1.38119 * 119.27260 * 0.02562 * 6 5 4 8 8 C 1.39625 * 118.44898 * 359.97438 * 7 6 5 9 9 N 1.38539 * 120.49531 * 180.02562 * 8 7 6 10 10 C 1.46501 * 119.99525 * 359.97438 * 9 8 7 11 11 H 1.08990 * 109.47646 * 34.99823 * 10 9 8 12 12 C 1.50706 * 109.46773 * 155.00088 * 10 9 8 13 13 H 1.07996 * 119.99936 * 359.97438 * 12 10 9 14 14 C 1.37876 * 119.99502 * 179.97438 * 12 10 9 15 15 N 1.31510 * 120.00317 * 359.97438 * 14 12 10 16 16 Si 1.86807 * 119.99731 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46857 * 89.99836 * 16 14 12 18 18 H 1.48501 * 109.47102 * 209.99989 * 16 14 12 19 19 H 1.48498 * 109.46945 * 330.00062 * 16 14 12 20 20 C 1.52997 * 109.46802 * 274.99683 * 10 9 8 21 21 C 1.52997 * 109.47602 * 65.00680 * 20 10 9 22 22 N 1.32264 * 119.15149 * 179.97438 * 4 3 2 23 23 H 1.09005 * 109.46884 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47032 * 300.00371 * 1 2 3 25 25 H 1.08995 * 109.47094 * 60.00216 * 1 2 3 26 26 H 1.08999 * 109.47032 * 239.99629 * 2 1 3 27 27 H 1.09003 * 109.46940 * 119.99501 * 2 1 3 28 28 H 1.08006 * 120.36430 * 180.02562 * 6 5 4 29 29 H 1.07999 * 120.77541 * 180.02562 * 7 6 5 30 30 H 0.96997 * 120.00154 * 179.97438 * 9 8 7 31 31 H 0.97007 * 120.00009 * 180.02562 * 15 14 12 32 32 H 1.09007 * 109.46814 * 185.00640 * 20 10 9 33 33 H 1.08999 * 109.47329 * 305.00186 * 20 10 9 34 34 H 1.08996 * 109.47850 * 180.02562 * 21 20 10 35 35 H 1.09007 * 109.46800 * 300.00358 * 21 20 10 36 36 H 1.09004 * 109.46873 * 59.99095 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3492 1.5247 -0.0005 5 7 4.1397 0.4636 -0.0015 6 6 5.4581 0.5960 -0.0016 7 6 6.0097 1.8623 0.0000 8 6 5.1498 2.9624 0.0010 9 7 5.6573 4.2515 0.0020 10 6 7.1062 4.4681 0.0026 11 1 7.5903 3.6898 -0.5871 12 6 7.4126 5.8165 -0.5968 13 1 6.6086 6.4484 -0.9439 14 6 8.7195 6.2431 -0.7021 15 7 9.6985 5.4737 -0.2790 16 14 9.0995 7.9141 -1.4458 17 1 9.1114 8.9417 -0.3739 18 1 10.4292 7.8714 -2.1056 19 1 8.0599 8.2573 -2.4491 20 6 7.6286 4.4183 1.4398 21 6 7.4298 3.0111 2.0063 22 7 3.8366 2.7543 -0.0011 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 6.0945 -0.2766 -0.0028 29 1 7.0811 1.9984 -0.0004 30 1 5.0533 5.0105 0.0024 31 1 10.6180 5.7740 -0.3527 32 1 8.6899 4.6673 1.4494 33 1 7.0815 5.1365 2.0504 34 1 7.8015 2.9757 3.0303 35 1 6.3685 2.7622 1.9966 36 1 7.9769 2.2929 1.3956 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161052777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:29:32 Heat of formation + Delta-G solvation = -4.921989 kcal Electronic energy + Delta-G solvation = -18400.494391 eV Core-core repulsion = 15498.719127 eV Total energy + Delta-G solvation = -2901.775265 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.03936 -39.73076 -38.01744 -35.17828 -34.13274 -32.84840 -32.03757 -31.16207 -28.61279 -25.39149 -25.01451 -24.57815 -23.17277 -21.61215 -19.77094 -19.19254 -18.21797 -17.50252 -17.18759 -16.81943 -16.29340 -15.89953 -15.44415 -15.02673 -14.63469 -14.58050 -14.33612 -13.67833 -13.43182 -13.30598 -13.19168 -12.89395 -12.73885 -12.48021 -12.41307 -12.14043 -11.97883 -11.83731 -11.68283 -11.41525 -10.99945 -10.55554 -10.13984 -10.09558 -8.80281 -8.20350 -6.34781 0.30078 0.50844 1.43389 1.44904 1.50592 1.56163 2.36296 2.65149 2.99666 3.10418 3.36175 3.86527 4.12107 4.12120 4.20710 4.34194 4.49329 4.52587 4.65058 4.67267 4.81980 4.88203 4.97502 5.00486 5.17119 5.24511 5.30721 5.34690 5.51793 5.61048 5.73884 5.83852 6.10030 6.31332 6.48542 6.68711 6.89164 7.32055 7.41790 8.84353 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.039593 B = 0.004814 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.030772 B = 5814.758018 C = 6212.516630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 O -0.313 6.313 4 C 0.519 3.481 5 N -0.618 5.618 6 C 0.201 3.799 7 C -0.328 4.328 8 C 0.461 3.539 9 N -0.684 5.684 10 C 0.284 3.716 11 H 0.029 0.971 12 C -0.555 4.555 13 H 0.059 0.941 14 C 0.029 3.971 15 N -0.904 5.904 16 Si 0.962 3.038 17 H -0.275 1.275 18 H -0.281 1.281 19 H -0.273 1.273 20 C -0.127 4.127 21 C -0.138 4.138 22 N -0.625 5.625 23 H 0.109 0.891 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.206 0.794 29 H 0.154 0.846 30 H 0.398 0.602 31 H 0.268 0.732 32 H 0.083 0.917 33 H 0.029 0.971 34 H 0.048 0.952 35 H 0.039 0.961 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.902 -10.501 1.606 13.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.008 4.008 3 O -0.216 6.216 4 C 0.214 3.786 5 N -0.354 5.354 6 C 0.043 3.957 7 C -0.356 4.356 8 C 0.215 3.785 9 N -0.310 5.310 10 C 0.181 3.819 11 H 0.047 0.953 12 C -0.593 4.593 13 H 0.077 0.923 14 C -0.173 4.173 15 N -0.542 5.542 16 Si 0.787 3.213 17 H -0.201 1.201 18 H -0.206 1.206 19 H -0.198 1.198 20 C -0.166 4.166 21 C -0.195 4.195 22 N -0.364 5.364 23 H 0.127 0.873 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.222 0.778 29 H 0.171 0.829 30 H 0.232 0.768 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.690 -10.455 1.614 14.346 hybrid contribution 1.076 1.436 -0.340 1.826 sum -8.614 -9.020 1.274 12.537 Atomic orbital electron populations 1.21856 0.90598 1.04563 1.03230 1.22937 0.96211 0.78721 1.02892 1.86007 1.14925 1.33330 1.87293 1.20328 0.85706 0.84704 0.87839 1.68129 1.06963 1.32146 1.28143 1.23095 0.89266 0.97110 0.86259 1.22461 1.02672 0.93242 1.17255 1.18536 0.86712 0.87902 0.85371 1.45339 1.08964 1.02689 1.74038 1.18687 0.73654 0.96032 0.93516 0.95345 1.21472 0.93113 1.02794 1.41894 0.92320 1.25524 0.95730 1.00723 0.95311 1.69942 0.99970 1.37978 1.46272 0.85499 0.77500 0.79722 0.78558 1.20058 1.20596 1.19809 1.21890 1.03026 0.95412 0.96286 1.22049 0.99985 0.97470 1.00044 1.66825 1.14385 1.24388 1.30835 0.87296 0.91776 0.91823 0.91307 0.91229 0.77783 0.82873 0.76797 0.92259 0.89911 0.95236 0.93269 0.94247 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 10.28 71.98 0.74 -1.63 16 2 C 0.07 1.58 6.01 71.98 0.43 2.01 16 3 O -0.31 -10.48 10.19 -87.49 -0.89 -11.37 16 4 C 0.52 19.40 8.49 180.58 1.53 20.93 16 5 N -0.62 -20.36 9.22 -313.75 -2.89 -23.25 16 6 C 0.20 6.01 11.28 84.56 0.95 6.96 16 7 C -0.33 -11.59 6.79 22.58 0.15 -11.44 16 8 C 0.46 18.71 6.53 133.17 0.87 19.58 16 9 N -0.68 -29.28 5.16 -327.66 -1.69 -30.97 16 10 C 0.28 13.24 2.20 44.25 0.10 13.34 16 11 H 0.03 1.44 6.50 -2.39 -0.02 1.42 16 12 C -0.55 -28.39 8.73 25.60 0.22 -28.17 16 13 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 14 C 0.03 1.45 5.29 84.65 0.45 1.90 16 15 N -0.90 -47.25 11.29 21.45 0.24 -47.01 16 16 Si 0.96 40.95 29.54 68.60 2.03 42.98 16 17 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 18 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 C -0.13 -5.62 5.45 30.59 0.17 -5.46 16 21 C -0.14 -5.11 8.22 71.98 0.59 -4.51 16 22 N -0.62 -25.88 10.50 -311.08 -3.27 -29.15 16 23 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.56 8.09 -2.39 -0.02 1.54 16 27 H 0.07 1.56 8.09 -2.39 -0.02 1.54 16 28 H 0.21 4.15 8.06 -2.91 -0.02 4.13 16 29 H 0.15 5.45 4.13 -2.91 -0.01 5.43 16 30 H 0.40 16.84 8.66 -92.71 -0.80 16.04 16 31 H 0.27 13.33 8.31 -92.70 -0.77 12.56 16 32 H 0.08 4.07 5.95 -2.38 -0.01 4.06 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.04 1.47 5.39 -2.38 -0.01 1.45 16 36 H 0.06 2.10 6.34 -2.38 -0.02 2.08 16 Total: -1.00 -58.59 294.45 0.03 -58.55 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.30 Total: 26.69 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 6.21 Total: 13.52 kcal Atomic # 7 Polarization: -122.77 SS G_CDS: -7.61 Total: -130.37 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.89 Total: -11.37 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -58.59 0.03 -58.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.632 kcal (2) G-P(sol) polarization free energy of solvation -58.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds