Wall clock time and date at job start Thu Apr 9 2020 12:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 6 6 C 1.52996 * 109.46975 * 180.02562 * 4 2 1 7 7 O 1.42902 * 109.47084 * 304.99855 * 6 4 2 8 8 N 1.46500 * 109.47204 * 60.00075 * 4 2 1 9 9 C 1.38797 * 119.99755 * 205.00060 * 8 4 2 10 10 C 1.40081 * 120.76293 * 359.72001 * 9 8 4 11 11 N 1.31663 * 119.14066 * 179.71403 * 10 9 8 12 12 C 1.33599 * 120.79028 * 0.57679 * 11 10 9 13 13 C 1.41145 * 119.17144 * 179.67971 * 12 11 10 14 14 H 1.08007 * 119.99927 * 180.02562 * 13 12 11 15 15 C 1.40042 * 120.00079 * 0.02562 * 13 12 11 16 16 N 1.30726 * 119.99877 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99922 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47110 * 90.00046 * 17 15 13 19 19 H 1.48495 * 109.47217 * 209.99992 * 17 15 13 20 20 H 1.48501 * 109.47214 * 330.00447 * 17 15 13 21 21 N 1.33606 * 121.65405 * 359.69670 * 12 11 10 22 22 C 1.31657 * 120.79563 * 0.02562 * 21 12 11 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09000 * 109.47805 * 64.99517 * 6 4 2 31 31 H 1.09000 * 109.47097 * 184.99729 * 6 4 2 32 32 H 0.96703 * 114.00106 * 180.02562 * 7 6 4 33 33 H 0.96993 * 119.99618 * 25.00155 * 8 4 2 34 34 H 1.08000 * 120.42869 * 359.97438 * 10 9 8 35 35 H 0.96999 * 120.00124 * 180.02562 * 16 15 13 36 36 H 1.07999 * 120.43445 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7207 1.2495 7 8 4.0468 -1.2897 0.0284 8 7 1.5518 -2.1025 1.2491 9 6 1.4192 -2.7917 2.4466 10 6 1.7533 -2.1842 3.6637 11 7 1.6097 -2.8656 4.7811 12 6 1.1630 -4.1245 4.7619 13 6 1.0286 -4.8256 5.9795 14 1 0.6691 -5.8440 5.9794 15 6 1.3615 -4.2006 7.1877 16 7 1.7961 -2.9677 7.1878 17 14 1.1829 -5.1282 8.7992 18 1 2.4507 -5.8388 9.1044 19 1 0.8778 -4.1693 9.8912 20 1 0.0785 -6.1141 8.6832 21 7 0.8405 -4.7366 3.6189 22 6 0.9543 -4.1131 2.4649 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 3.9331 0.3031 1.3392 31 1 3.9334 -1.3102 2.0912 32 1 5.0108 -1.3220 -0.0405 33 1 1.3211 -2.5353 0.4123 34 1 2.1197 -1.1685 3.6857 35 1 2.0271 -2.5350 8.0247 36 1 0.6916 -4.6134 1.5445 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161740860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:29:46 Heat of formation + Delta-G solvation = -7.952128 kcal Electronic energy + Delta-G solvation = -18502.561116 eV Core-core repulsion = 15600.654455 eV Total energy + Delta-G solvation = -2901.906661 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -39.20153 -37.98258 -35.44790 -34.03641 -32.93421 -31.67119 -29.32188 -28.13087 -26.83000 -25.12742 -23.03168 -22.70407 -21.03491 -19.66498 -17.75836 -17.22573 -16.44974 -15.65786 -15.25281 -14.88367 -14.76513 -14.31017 -13.95799 -13.18285 -13.13829 -12.75921 -12.60555 -12.43928 -12.13280 -11.87544 -11.76997 -11.21434 -11.15337 -10.96739 -10.77734 -10.56262 -10.40828 -10.15164 -9.83012 -9.70588 -9.31569 -9.13486 -8.86161 -7.22282 -6.70171 -6.37019 -4.32147 2.78040 2.95328 3.14707 3.18952 3.23403 4.02201 4.19148 4.51324 4.80305 4.83675 5.02453 5.18639 5.49798 5.54910 5.60906 5.71432 5.75102 5.87278 5.90359 5.97062 5.99726 5.99966 6.05509 6.20478 6.31626 6.38430 6.49027 6.54047 7.13043 7.21813 7.43641 7.74533 8.23755 8.32446 8.60132 8.62638 8.79272 9.26426 10.28160 10.43941 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.036114 B = 0.005029 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.136864 B = 5566.312266 C = 5693.265798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.144 4.144 4 C 0.172 3.828 5 H 0.081 0.919 6 C 0.056 3.944 7 O -0.565 6.565 8 N -0.736 5.736 9 C -0.032 4.032 10 C 0.095 3.905 11 N -0.475 5.475 12 C 0.368 3.632 13 C -0.416 4.416 14 H 0.088 0.912 15 C 0.069 3.931 16 N -0.729 5.729 17 Si 0.914 3.086 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.261 1.261 21 N -0.565 5.565 22 C 0.100 3.900 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.370 0.630 33 H 0.387 0.613 34 H 0.123 0.877 35 H 0.270 0.730 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.435 7.936 -10.013 13.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.202 4.202 4 C 0.064 3.936 5 H 0.099 0.901 6 C -0.024 4.024 7 O -0.369 6.369 8 N -0.371 5.371 9 C -0.137 4.137 10 C -0.082 4.082 11 N -0.191 5.191 12 C 0.127 3.873 13 C -0.453 4.453 14 H 0.106 0.894 15 C -0.155 4.155 16 N -0.353 5.353 17 Si 0.738 3.262 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.185 1.185 21 N -0.284 5.284 22 C -0.074 4.074 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.215 0.785 33 H 0.220 0.780 34 H 0.140 0.860 35 H 0.081 0.919 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.795 7.674 -8.949 11.924 hybrid contribution 0.686 0.147 -0.322 0.772 sum 2.480 7.821 -9.271 12.380 Atomic orbital electron populations 1.21803 0.95072 1.02188 1.01063 1.21223 0.95734 0.95923 0.98704 1.21832 1.01087 0.95709 1.01576 1.20717 0.90293 0.84614 0.97963 0.90101 1.22904 0.96788 0.96059 0.86636 1.86468 1.25766 1.85364 1.39317 1.43494 1.76627 1.11866 1.05153 1.19218 1.11171 0.95376 0.87960 1.22663 0.99116 0.98870 0.87519 1.69266 1.15976 1.08238 1.25653 1.19797 0.90283 0.86542 0.90714 1.19071 1.38295 0.99821 0.88087 0.89411 1.25982 0.93777 0.94852 1.00905 1.70145 1.26989 1.10572 1.27555 0.86235 0.79625 0.79943 0.80416 1.19517 1.20271 1.18532 1.68545 1.23271 1.38291 0.98303 1.22178 0.98836 0.90063 0.96324 0.92196 0.92866 0.93283 0.90274 0.92741 0.92494 0.92797 0.93846 0.93313 0.78453 0.78000 0.85953 0.91852 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.04 37.16 0.34 -1.37 16 2 C -0.10 -1.16 2.36 -90.62 -0.21 -1.37 16 3 C -0.14 -1.47 8.84 37.16 0.33 -1.14 16 4 C 0.17 2.48 1.65 -67.93 -0.11 2.36 16 5 H 0.08 1.25 6.54 -51.93 -0.34 0.91 16 6 C 0.06 0.76 6.31 37.16 0.23 0.99 16 7 O -0.57 -7.31 12.73 -35.23 -0.45 -7.76 16 8 N -0.74 -12.46 4.48 -51.77 -0.23 -12.69 16 9 C -0.03 -0.70 6.70 -83.32 -0.56 -1.25 16 10 C 0.09 2.27 10.12 -16.93 -0.17 2.10 16 11 N -0.47 -13.32 7.84 -12.49 -0.10 -13.41 16 12 C 0.37 10.68 7.35 -158.22 -1.16 9.51 16 13 C -0.42 -11.81 9.35 -37.80 -0.35 -12.17 16 14 H 0.09 2.41 7.85 -52.48 -0.41 2.00 16 15 C 0.07 1.82 5.50 -17.35 -0.10 1.73 16 16 N -0.73 -19.79 11.41 55.55 0.63 -19.16 16 17 Si 0.91 19.28 29.56 -169.99 -5.02 14.25 16 18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 21 N -0.57 -15.34 10.34 -12.49 -0.13 -15.47 16 22 C 0.10 2.33 11.20 -16.93 -0.19 2.14 16 23 H 0.06 0.77 7.45 -51.93 -0.39 0.38 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 1.01 7.56 -51.93 -0.39 0.61 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.56 6.55 -51.93 -0.34 0.22 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.50 6.71 -51.93 -0.35 0.15 16 31 H 0.05 0.77 7.82 -51.93 -0.41 0.37 16 32 H 0.37 3.29 9.12 45.56 0.42 3.71 16 33 H 0.39 6.12 8.41 -40.82 -0.34 5.78 16 34 H 0.12 2.61 6.37 -52.49 -0.33 2.28 16 35 H 0.27 6.64 8.29 -40.82 -0.34 6.30 16 36 H 0.13 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 299.38 15.07 4.51 4.51 Total: -1.00 -31.57 299.38 -6.88 -38.45 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -4.13 Total: 9.75 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.96 Total: 1.53 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.17 Total: -60.73 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.45 Total: -7.76 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.57 -6.88 -38.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161740860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.501 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds