Wall clock time and date at job start Thu Apr 9 2020 12:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 6 6 C 1.52996 * 109.46975 * 180.02562 * 4 2 1 7 7 O 1.42902 * 109.47084 * 304.99855 * 6 4 2 8 8 N 1.46500 * 109.47204 * 60.00075 * 4 2 1 9 9 C 1.38797 * 119.99755 * 205.00060 * 8 4 2 10 10 C 1.40081 * 120.76293 * 359.72001 * 9 8 4 11 11 N 1.31663 * 119.14066 * 179.71403 * 10 9 8 12 12 C 1.33599 * 120.79028 * 0.57679 * 11 10 9 13 13 C 1.41145 * 119.17144 * 179.67971 * 12 11 10 14 14 H 1.08007 * 119.99927 * 180.02562 * 13 12 11 15 15 C 1.40042 * 120.00079 * 0.02562 * 13 12 11 16 16 N 1.30726 * 119.99877 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99922 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47110 * 90.00046 * 17 15 13 19 19 H 1.48495 * 109.47217 * 209.99992 * 17 15 13 20 20 H 1.48501 * 109.47214 * 330.00447 * 17 15 13 21 21 N 1.33606 * 121.65405 * 359.69670 * 12 11 10 22 22 C 1.31657 * 120.79563 * 0.02562 * 21 12 11 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09000 * 109.47805 * 64.99517 * 6 4 2 31 31 H 1.09000 * 109.47097 * 184.99729 * 6 4 2 32 32 H 0.96703 * 114.00106 * 180.02562 * 7 6 4 33 33 H 0.96993 * 119.99618 * 25.00155 * 8 4 2 34 34 H 1.08000 * 120.42869 * 359.97438 * 10 9 8 35 35 H 0.96999 * 120.00124 * 180.02562 * 16 15 13 36 36 H 1.07999 * 120.43445 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7207 1.2495 7 8 4.0468 -1.2897 0.0284 8 7 1.5518 -2.1025 1.2491 9 6 1.4192 -2.7917 2.4466 10 6 1.7533 -2.1842 3.6637 11 7 1.6097 -2.8656 4.7811 12 6 1.1630 -4.1245 4.7619 13 6 1.0286 -4.8256 5.9795 14 1 0.6691 -5.8440 5.9794 15 6 1.3615 -4.2006 7.1877 16 7 1.7961 -2.9677 7.1878 17 14 1.1829 -5.1282 8.7992 18 1 2.4507 -5.8388 9.1044 19 1 0.8778 -4.1693 9.8912 20 1 0.0785 -6.1141 8.6832 21 7 0.8405 -4.7366 3.6189 22 6 0.9543 -4.1131 2.4649 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 3.9331 0.3031 1.3392 31 1 3.9334 -1.3102 2.0912 32 1 5.0108 -1.3220 -0.0405 33 1 1.3211 -2.5353 0.4123 34 1 2.1197 -1.1685 3.6857 35 1 2.0271 -2.5350 8.0247 36 1 0.6916 -4.6134 1.5445 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161740860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:29:46 Heat of formation + Delta-G solvation = -31.530259 kcal Electronic energy + Delta-G solvation = -18503.583541 eV Core-core repulsion = 15600.654455 eV Total energy + Delta-G solvation = -2902.929086 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.97842 -39.31292 -36.59820 -35.68550 -34.58047 -33.64861 -30.96813 -29.45020 -27.99814 -26.79344 -24.81301 -24.09996 -22.72188 -20.85515 -19.70799 -18.31629 -18.11405 -17.16566 -17.04329 -16.37671 -16.02685 -15.79970 -15.32801 -14.90922 -14.46005 -14.25326 -14.06970 -13.62245 -13.26123 -13.06836 -12.97577 -12.90301 -12.83580 -12.52748 -12.00138 -11.91098 -11.87918 -11.50472 -11.32763 -11.24461 -11.14049 -10.79561 -10.66047 -9.21255 -8.45667 -8.29932 -6.30493 0.89102 1.03206 1.43229 1.54461 1.58801 2.27996 2.79171 2.86327 3.48212 3.79892 3.95468 4.00847 4.06179 4.11137 4.20716 4.35412 4.45612 4.53039 4.63108 4.71616 4.75704 4.84954 4.95653 5.04168 5.08385 5.18924 5.27158 5.34838 5.45136 5.50420 5.63407 6.25485 6.57019 6.61529 6.81542 6.91722 7.09796 7.34833 8.31174 8.52708 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.036114 B = 0.005029 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.136864 B = 5566.312266 C = 5693.265798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.142 4.142 4 C 0.163 3.837 5 H 0.072 0.928 6 C 0.063 3.937 7 O -0.575 6.575 8 N -0.723 5.723 9 C 0.003 3.997 10 C 0.074 3.926 11 N -0.504 5.504 12 C 0.336 3.664 13 C -0.460 4.460 14 H 0.080 0.920 15 C 0.027 3.973 16 N -0.766 5.766 17 Si 0.994 3.006 18 H -0.262 1.262 19 H -0.264 1.264 20 H -0.260 1.260 21 N -0.588 5.588 22 C 0.081 3.919 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.021 0.979 32 H 0.389 0.611 33 H 0.396 0.604 34 H 0.144 0.856 35 H 0.278 0.722 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 9.029 -11.172 14.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.199 4.199 4 C 0.056 3.944 5 H 0.090 0.910 6 C -0.017 4.017 7 O -0.382 6.382 8 N -0.357 5.357 9 C -0.104 4.104 10 C -0.101 4.101 11 N -0.221 5.221 12 C 0.092 3.908 13 C -0.497 4.497 14 H 0.098 0.902 15 C -0.194 4.194 16 N -0.391 5.391 17 Si 0.814 3.186 18 H -0.187 1.187 19 H -0.188 1.188 20 H -0.184 1.184 21 N -0.307 5.307 22 C -0.093 4.093 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.238 0.762 33 H 0.231 0.769 34 H 0.161 0.839 35 H 0.089 0.911 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.163 8.816 -10.201 13.655 hybrid contribution 0.611 -0.076 -0.264 0.670 sum 2.774 8.741 -10.465 13.915 Atomic orbital electron populations 1.21799 0.94998 1.01521 1.01732 1.21145 0.95675 0.96837 0.96896 1.21818 1.01434 0.94203 1.02469 1.20984 0.91251 0.82972 0.99153 0.90994 1.22723 0.95765 0.97172 0.86007 1.86414 1.27770 1.85404 1.38567 1.43593 1.75445 1.12774 1.03865 1.19194 1.07510 0.94754 0.88950 1.23022 0.99781 0.99707 0.87614 1.69184 1.16917 1.08358 1.27663 1.20109 0.91773 0.87364 0.91570 1.19334 1.40853 1.00051 0.89508 0.90159 1.26875 0.92733 0.95705 1.04075 1.70219 1.27787 1.12078 1.28979 0.85050 0.79697 0.78519 0.75376 1.18686 1.18838 1.18364 1.68523 1.23877 1.39193 0.99081 1.22752 0.99067 0.91002 0.96477 0.93517 0.93545 0.91324 0.90403 0.92559 0.91942 0.91282 0.91051 0.96099 0.76246 0.76886 0.83932 0.91112 0.82396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.04 71.98 0.65 -2.41 16 2 C -0.09 -1.83 2.36 -10.79 -0.03 -1.86 16 3 C -0.14 -2.40 8.84 71.98 0.64 -1.76 16 4 C 0.16 4.37 1.65 44.99 0.07 4.44 16 5 H 0.07 2.10 6.54 -2.39 -0.02 2.09 16 6 C 0.06 1.57 6.31 71.98 0.45 2.02 16 7 O -0.57 -13.30 12.73 -148.98 -1.90 -15.19 16 8 N -0.72 -23.24 4.48 -317.71 -1.42 -24.67 16 9 C 0.00 0.12 6.70 38.94 0.26 0.38 16 10 C 0.07 3.58 10.12 85.17 0.86 4.44 16 11 N -0.50 -29.13 7.84 -193.42 -1.52 -30.65 16 12 C 0.34 20.17 7.35 134.95 0.99 21.16 16 13 C -0.46 -27.21 9.35 23.42 0.22 -26.99 16 14 H 0.08 4.64 7.85 -2.91 -0.02 4.61 16 15 C 0.03 1.45 5.50 85.29 0.47 1.91 16 16 N -0.77 -42.66 11.41 21.84 0.25 -42.42 16 17 Si 0.99 40.22 29.56 68.60 2.03 42.25 16 18 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 19 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 N -0.59 -32.65 10.34 -193.42 -2.00 -34.65 16 22 C 0.08 3.73 11.20 85.17 0.95 4.68 16 23 H 0.05 1.11 7.45 -2.39 -0.02 1.09 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.08 1.73 7.56 -2.39 -0.02 1.71 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 1.00 6.55 -2.39 -0.02 0.98 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.41 6.71 -2.39 -0.02 1.39 16 31 H 0.02 0.64 7.82 -2.39 -0.02 0.62 16 32 H 0.39 5.84 9.12 -74.05 -0.68 5.17 16 33 H 0.40 11.63 8.41 -92.71 -0.78 10.85 16 34 H 0.14 6.09 6.37 -2.91 -0.02 6.07 16 35 H 0.28 13.89 8.29 -92.71 -0.77 13.13 16 36 H 0.16 6.06 8.06 -2.91 -0.02 6.03 16 Total: -1.00 -70.42 299.38 0.64 -69.78 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.35 Total: 29.52 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.55 Total: 6.03 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -4.69 Total: -132.39 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -1.90 Total: -15.19 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -70.42 0.64 -69.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161740860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.251 kcal (2) G-P(sol) polarization free energy of solvation -70.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds