Wall clock time and date at job start Thu Apr 9 2020 12:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47350 * 2 1 4 4 N 1.46910 * 109.46781 * 119.99946 * 2 1 3 5 5 C 1.46900 * 110.99750 * 297.49010 * 4 2 1 6 6 C 1.50704 * 109.47091 * 77.42357 * 5 4 2 7 7 H 1.07999 * 119.99968 * 1.79425 * 6 5 4 8 8 C 1.37873 * 120.00201 * 181.78622 * 6 5 4 9 9 N 1.31521 * 119.99928 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00282 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46840 * 90.00174 * 10 8 6 12 12 H 1.48497 * 109.47167 * 210.00389 * 10 8 6 13 13 H 1.48504 * 109.46993 * 330.00687 * 10 8 6 14 14 C 1.46899 * 110.99967 * 173.54271 * 4 2 1 15 15 C 1.50699 * 109.46675 * 293.94832 * 14 4 2 16 16 C 1.38244 * 119.97962 * 269.72644 * 15 14 4 17 17 C 1.38195 * 120.03308 * 179.72569 * 16 15 14 18 18 C 1.38470 * 119.96920 * 0.57480 * 17 16 15 19 19 F 1.35099 * 120.02189 * 179.68071 * 18 17 16 20 20 C 1.38460 * 119.94764 * 359.69797 * 18 17 16 21 21 C 1.38195 * 119.97378 * 0.02562 * 20 18 17 22 22 H 1.08997 * 109.47220 * 306.67990 * 1 2 3 23 23 H 1.09007 * 109.46523 * 66.68272 * 1 2 3 24 24 H 1.09001 * 109.47078 * 186.67522 * 1 2 3 25 25 H 1.08998 * 109.47592 * 239.99159 * 2 1 3 26 26 H 1.08998 * 109.47262 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46966 * 299.99686 * 3 2 1 28 28 H 1.09003 * 109.47235 * 59.99504 * 3 2 1 29 29 H 1.08993 * 109.47128 * 197.42530 * 5 4 2 30 30 H 1.09002 * 109.47420 * 317.42738 * 5 4 2 31 31 H 0.96996 * 120.00053 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47420 * 53.94759 * 14 4 2 33 33 H 1.08994 * 109.47330 * 173.95307 * 14 4 2 34 34 H 1.08007 * 119.97929 * 359.97438 * 16 15 14 35 35 H 1.08001 * 120.02066 * 180.25236 * 17 16 15 36 36 H 1.07998 * 120.01013 * 179.97438 * 20 18 17 37 37 H 1.08002 * 119.98618 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5982 0.0074 2.4204 6 6 0.1497 -0.2997 2.7009 7 1 -0.3945 -0.9728 2.0550 8 6 -0.4807 0.2783 3.7823 9 7 0.1819 1.0982 4.5687 10 14 -2.2759 -0.1030 4.1305 11 1 -2.3664 -1.2848 5.0251 12 1 -2.9116 1.0663 4.7891 13 1 -2.9769 -0.3938 2.8540 14 6 3.4799 -0.8472 1.1590 15 6 3.8556 -1.7739 0.0316 16 6 3.9549 -3.1339 0.2592 17 6 4.2938 -3.9853 -0.7752 18 6 4.5457 -3.4745 -2.0374 19 9 4.8834 -4.3052 -3.0478 20 6 4.4514 -2.1116 -2.2629 21 6 4.1067 -1.2628 -1.2282 22 1 -0.3633 0.6138 0.8241 23 1 -0.3632 0.4068 -0.9438 24 1 -0.3633 -1.0207 0.1195 25 1 1.8934 -0.5139 -0.8899 26 1 3.1300 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 2.2093 -0.3253 3.2593 30 1 1.7219 1.0818 2.2843 31 1 -0.2617 1.5052 5.3292 32 1 3.9440 0.1260 0.9993 33 1 3.8274 -1.2650 2.1038 34 1 3.7636 -3.5315 1.2450 35 1 4.3674 -5.0482 -0.5981 36 1 4.6480 -1.7121 -3.2468 37 1 4.0336 -0.1997 -1.4038 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:48 Heat of formation + Delta-G solvation = -16.441382 kcal Electronic energy + Delta-G solvation = -18549.527840 eV Core-core repulsion = 15627.333095 eV Total energy + Delta-G solvation = -2922.194744 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.80952 -39.34299 -37.32920 -32.73226 -31.97311 -31.01856 -29.87077 -27.40710 -26.18769 -24.43202 -22.97790 -22.16092 -21.23073 -18.62441 -17.51124 -16.45542 -16.22519 -15.56691 -15.41273 -15.17130 -14.60562 -14.06780 -13.90788 -13.48674 -13.23241 -13.16143 -12.75461 -12.23171 -12.04301 -11.61157 -11.41240 -11.24783 -11.15189 -10.90044 -10.74481 -10.66836 -10.61317 -10.30180 -10.14288 -9.42667 -9.08488 -8.94528 -8.45136 -8.33924 -7.20944 -6.00988 -3.98051 1.27789 1.36089 3.32234 3.38938 3.42158 3.70756 4.35939 4.43954 4.81942 4.95026 4.99735 5.12841 5.33255 5.41427 5.43411 5.66264 5.78862 5.88092 5.98280 6.05414 6.10365 6.20048 6.22557 6.34433 6.37151 6.50994 6.58129 6.69126 6.77915 6.96094 7.02369 7.20076 7.41409 7.49678 7.85600 8.13165 8.21105 8.55246 9.06968 9.62096 11.09364 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.033069 B = 0.005206 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.498427 B = 5376.671939 C = 5541.373116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.085 3.915 3 C -0.188 4.188 4 N -0.524 5.524 5 C 0.184 3.816 6 C -0.496 4.496 7 H 0.071 0.929 8 C 0.052 3.948 9 N -0.901 5.901 10 Si 0.892 3.108 11 H -0.282 1.282 12 H -0.289 1.289 13 H -0.273 1.273 14 C 0.085 3.915 15 C -0.068 4.068 16 C -0.072 4.072 17 C -0.155 4.155 18 C 0.083 3.917 19 F -0.147 7.147 20 C -0.156 4.156 21 C -0.088 4.088 22 H 0.091 0.909 23 H 0.027 0.973 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.023 0.977 30 H 0.008 0.992 31 H 0.260 0.740 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.914 -4.443 -10.639 13.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 C -0.247 4.247 4 N -0.248 5.248 5 C 0.060 3.940 6 C -0.535 4.535 7 H 0.089 0.911 8 C -0.149 4.149 9 N -0.541 5.541 10 Si 0.721 3.279 11 H -0.208 1.208 12 H -0.215 1.215 13 H -0.198 1.198 14 C -0.043 4.043 15 C -0.068 4.068 16 C -0.090 4.090 17 C -0.174 4.174 18 C 0.064 3.936 19 F -0.126 7.126 20 C -0.175 4.175 21 C -0.107 4.107 22 H 0.110 0.890 23 H 0.046 0.954 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.041 0.959 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.680 -4.826 -10.487 13.865 hybrid contribution -0.538 0.503 0.075 0.741 sum 7.141 -4.324 -10.412 13.345 Atomic orbital electron populations 1.22114 0.94211 1.02793 1.00718 1.21526 0.96469 0.91152 0.93195 1.22509 1.00020 0.99697 1.02475 1.62457 1.06551 1.51797 1.03991 1.19896 0.96451 0.92529 0.85154 1.21341 0.95446 1.26285 1.10434 0.91116 1.24975 0.98133 0.95556 0.96194 1.69955 1.36530 1.31011 1.16635 0.86581 0.85183 0.77692 0.78491 1.20774 1.21474 1.19799 1.21098 0.91490 0.95999 0.95701 1.20088 0.97000 0.94612 0.95138 1.20959 0.96543 0.92491 0.99036 1.21117 1.03581 1.00884 0.91772 1.17692 1.02821 0.87993 0.85143 1.91462 1.90166 1.71729 1.59267 1.21042 1.04199 0.91687 1.00573 1.20972 0.97934 0.99821 0.91967 0.89048 0.95357 0.92670 0.92013 0.93766 0.93351 0.90851 0.95852 0.97420 0.93069 0.94435 0.90302 0.84796 0.85130 0.85266 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 7.73 37.16 0.29 -2.47 16 2 C 0.09 1.57 2.67 -67.71 -0.18 1.39 16 3 C -0.19 -3.22 8.57 37.16 0.32 -2.90 16 4 N -0.52 -10.55 4.48 -229.52 -1.03 -11.58 16 5 C 0.18 4.48 4.50 -4.97 -0.02 4.46 16 6 C -0.50 -13.11 6.59 -34.44 -0.23 -13.34 16 7 H 0.07 1.87 5.84 -52.49 -0.31 1.56 16 8 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 9 N -0.90 -25.91 13.29 55.43 0.74 -25.17 16 10 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 14 C 0.09 1.44 4.94 -4.98 -0.02 1.41 16 15 C -0.07 -1.00 4.90 -104.62 -0.51 -1.51 16 16 C -0.07 -1.00 9.70 -39.59 -0.38 -1.38 16 17 C -0.15 -2.00 10.03 -39.51 -0.40 -2.39 16 18 C 0.08 1.11 7.30 -39.41 -0.29 0.82 16 19 F -0.15 -1.99 17.27 2.25 0.04 -1.95 16 20 C -0.16 -1.97 10.03 -39.52 -0.40 -2.37 16 21 C -0.09 -1.18 7.87 -39.59 -0.31 -1.49 16 22 H 0.09 2.04 5.79 -51.93 -0.30 1.74 16 23 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 24 H 0.05 1.12 7.29 -51.93 -0.38 0.74 16 25 H 0.06 1.06 5.71 -51.93 -0.30 0.76 16 26 H 0.04 0.69 6.23 -51.93 -0.32 0.36 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.46 6.02 -51.93 -0.31 1.14 16 29 H 0.02 0.61 7.70 -51.93 -0.40 0.21 16 30 H 0.01 0.21 5.47 -51.93 -0.28 -0.08 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.04 0.61 6.18 -51.93 -0.32 0.29 16 33 H 0.08 1.33 7.76 -51.93 -0.40 0.93 16 34 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 35 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.13 1.58 7.72 -52.49 -0.41 1.17 16 LS Contribution 296.66 15.07 4.47 4.47 Total: -1.00 -27.95 296.66 -8.02 -35.97 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.98 Total: 0.60 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -2.23 Total: -18.47 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.29 Total: -36.75 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.95 -8.02 -35.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.526 kcal (2) G-P(sol) polarization free energy of solvation -27.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds