Wall clock time and date at job start Thu Apr 9 2020 12:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47350 * 2 1 4 4 N 1.46910 * 109.46781 * 119.99946 * 2 1 3 5 5 C 1.46900 * 110.99750 * 297.49010 * 4 2 1 6 6 C 1.50704 * 109.47091 * 77.42357 * 5 4 2 7 7 H 1.07999 * 119.99968 * 1.79425 * 6 5 4 8 8 C 1.37873 * 120.00201 * 181.78622 * 6 5 4 9 9 N 1.31521 * 119.99928 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00282 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46840 * 90.00174 * 10 8 6 12 12 H 1.48497 * 109.47167 * 210.00389 * 10 8 6 13 13 H 1.48504 * 109.46993 * 330.00687 * 10 8 6 14 14 C 1.46899 * 110.99967 * 173.54271 * 4 2 1 15 15 C 1.50699 * 109.46675 * 293.94832 * 14 4 2 16 16 C 1.38244 * 119.97962 * 269.72644 * 15 14 4 17 17 C 1.38195 * 120.03308 * 179.72569 * 16 15 14 18 18 C 1.38470 * 119.96920 * 0.57480 * 17 16 15 19 19 F 1.35099 * 120.02189 * 179.68071 * 18 17 16 20 20 C 1.38460 * 119.94764 * 359.69797 * 18 17 16 21 21 C 1.38195 * 119.97378 * 0.02562 * 20 18 17 22 22 H 1.08997 * 109.47220 * 306.67990 * 1 2 3 23 23 H 1.09007 * 109.46523 * 66.68272 * 1 2 3 24 24 H 1.09001 * 109.47078 * 186.67522 * 1 2 3 25 25 H 1.08998 * 109.47592 * 239.99159 * 2 1 3 26 26 H 1.08998 * 109.47262 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46966 * 299.99686 * 3 2 1 28 28 H 1.09003 * 109.47235 * 59.99504 * 3 2 1 29 29 H 1.08993 * 109.47128 * 197.42530 * 5 4 2 30 30 H 1.09002 * 109.47420 * 317.42738 * 5 4 2 31 31 H 0.96996 * 120.00053 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47420 * 53.94759 * 14 4 2 33 33 H 1.08994 * 109.47330 * 173.95307 * 14 4 2 34 34 H 1.08007 * 119.97929 * 359.97438 * 16 15 14 35 35 H 1.08001 * 120.02066 * 180.25236 * 17 16 15 36 36 H 1.07998 * 120.01013 * 179.97438 * 20 18 17 37 37 H 1.08002 * 119.98618 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5982 0.0074 2.4204 6 6 0.1497 -0.2997 2.7009 7 1 -0.3945 -0.9728 2.0550 8 6 -0.4807 0.2783 3.7823 9 7 0.1819 1.0982 4.5687 10 14 -2.2759 -0.1030 4.1305 11 1 -2.3664 -1.2848 5.0251 12 1 -2.9116 1.0663 4.7891 13 1 -2.9769 -0.3938 2.8540 14 6 3.4799 -0.8472 1.1590 15 6 3.8556 -1.7739 0.0316 16 6 3.9549 -3.1339 0.2592 17 6 4.2938 -3.9853 -0.7752 18 6 4.5457 -3.4745 -2.0374 19 9 4.8834 -4.3052 -3.0478 20 6 4.4514 -2.1116 -2.2629 21 6 4.1067 -1.2628 -1.2282 22 1 -0.3633 0.6138 0.8241 23 1 -0.3632 0.4068 -0.9438 24 1 -0.3633 -1.0207 0.1195 25 1 1.8934 -0.5139 -0.8899 26 1 3.1300 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 2.2093 -0.3253 3.2593 30 1 1.7219 1.0818 2.2843 31 1 -0.2617 1.5052 5.3292 32 1 3.9440 0.1260 0.9993 33 1 3.8274 -1.2650 2.1038 34 1 3.7636 -3.5315 1.2450 35 1 4.3674 -5.0482 -0.5981 36 1 4.6480 -1.7121 -3.2468 37 1 4.0336 -0.1997 -1.4038 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:48 Heat of formation + Delta-G solvation = -31.618518 kcal Electronic energy + Delta-G solvation = -18550.185970 eV Core-core repulsion = 15627.333095 eV Total energy + Delta-G solvation = -2922.852875 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.84269 -40.55451 -38.74945 -34.72142 -33.31932 -32.05926 -31.37173 -29.11414 -27.73599 -25.89229 -24.24204 -23.77566 -22.39060 -20.15802 -18.58562 -18.40828 -17.34218 -16.96086 -16.63250 -16.50677 -16.25678 -15.59812 -15.13701 -14.80289 -14.47895 -14.32385 -14.22325 -13.93121 -13.33765 -13.06252 -12.95841 -12.93990 -12.65242 -12.52601 -12.43753 -12.27132 -11.91565 -11.83422 -11.77706 -11.18262 -10.95747 -10.47349 -9.97376 -9.51851 -8.83605 -8.09576 -6.12684 0.20335 0.34779 1.43555 1.44549 1.54658 2.45015 2.64053 3.22269 3.33685 3.50473 3.81567 3.88783 4.03927 4.19256 4.29068 4.38232 4.42662 4.59039 4.67499 4.72862 4.92043 5.01715 5.03545 5.05396 5.10148 5.16261 5.20895 5.28296 5.31187 5.35869 5.63676 5.70101 5.78123 5.82389 5.98746 6.20213 6.51720 6.73663 6.99385 7.51381 9.00183 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.033069 B = 0.005206 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.498427 B = 5376.671939 C = 5541.373116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.085 3.915 3 C -0.180 4.180 4 N -0.533 5.533 5 C 0.199 3.801 6 C -0.497 4.497 7 H 0.069 0.931 8 C 0.000 4.000 9 N -0.938 5.938 10 Si 0.954 3.046 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.264 1.264 14 C 0.088 3.912 15 C -0.081 4.081 16 C -0.080 4.080 17 C -0.153 4.153 18 C 0.076 3.924 19 F -0.148 7.148 20 C -0.151 4.151 21 C -0.088 4.088 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.042 0.958 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.038 0.962 29 H -0.005 1.005 30 H -0.010 1.010 31 H 0.259 0.741 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.135 0.865 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.971 -5.069 -12.679 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.024 4.024 3 C -0.238 4.238 4 N -0.257 5.257 5 C 0.073 3.927 6 C -0.535 4.535 7 H 0.087 0.913 8 C -0.197 4.197 9 N -0.580 5.580 10 Si 0.780 3.220 11 H -0.205 1.205 12 H -0.213 1.213 13 H -0.189 1.189 14 C -0.039 4.039 15 C -0.082 4.082 16 C -0.099 4.099 17 C -0.172 4.172 18 C 0.056 3.944 19 F -0.127 7.127 20 C -0.169 4.169 21 C -0.107 4.107 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.013 0.987 30 H 0.008 0.992 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.153 0.847 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.743 -5.466 -12.549 15.726 hybrid contribution -0.488 0.656 0.632 1.033 sum 7.255 -4.810 -11.917 14.758 Atomic orbital electron populations 1.22007 0.95164 1.01387 1.00879 1.21604 0.95728 0.92074 0.92968 1.22396 1.00948 0.98553 1.01912 1.62341 1.08947 1.51329 1.03054 1.19537 0.95160 0.91662 0.86303 1.21618 0.96465 1.25473 1.09993 0.91289 1.25740 1.02105 0.95589 0.96236 1.70077 1.38188 1.32385 1.17307 0.85610 0.80542 0.77380 0.78495 1.20462 1.21350 1.18875 1.21053 0.89369 0.96911 0.96589 1.19929 0.98676 0.94556 0.95051 1.21033 0.96875 0.92424 0.99555 1.21288 1.02761 1.01780 0.91368 1.17882 1.02803 0.88452 0.85225 1.91464 1.90166 1.71814 1.59262 1.21277 1.02995 0.91253 1.01419 1.21082 0.97580 1.00648 0.91350 0.92392 0.92464 0.93910 0.89776 0.92220 0.90889 0.94284 0.98679 0.99235 0.93175 0.93860 0.91177 0.84712 0.83296 0.82853 0.84060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 7.73 71.98 0.56 -4.65 16 2 C 0.08 2.99 2.67 44.91 0.12 3.11 16 3 C -0.18 -5.88 8.57 71.98 0.62 -5.26 16 4 N -0.53 -21.43 4.48 -880.06 -3.94 -25.37 16 5 C 0.20 9.98 4.50 85.56 0.39 10.37 16 6 C -0.50 -26.77 6.59 25.60 0.17 -26.60 16 7 H 0.07 3.68 5.84 -2.91 -0.02 3.66 16 8 C 0.00 0.01 5.46 84.65 0.46 0.47 16 9 N -0.94 -55.31 13.29 21.45 0.28 -55.03 16 10 Si 0.95 43.83 29.54 68.60 2.03 45.85 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 14 C 0.09 2.95 4.94 85.56 0.42 3.37 16 15 C -0.08 -2.28 4.90 -19.86 -0.10 -2.38 16 16 C -0.08 -2.12 9.70 22.26 0.22 -1.90 16 17 C -0.15 -3.62 10.03 22.31 0.22 -3.40 16 18 C 0.08 1.81 7.30 22.38 0.16 1.98 16 19 F -0.15 -3.61 17.27 44.97 0.78 -2.84 16 20 C -0.15 -3.32 10.03 22.31 0.22 -3.10 16 21 C -0.09 -2.11 7.87 22.26 0.18 -1.93 16 22 H 0.06 2.59 5.79 -2.39 -0.01 2.58 16 23 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.04 1.69 7.29 -2.39 -0.02 1.68 16 25 H 0.08 2.64 5.71 -2.39 -0.01 2.63 16 26 H 0.06 1.74 6.23 -2.39 -0.01 1.73 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.04 1.55 6.02 -2.39 -0.01 1.54 16 29 H 0.00 -0.27 7.70 -2.39 -0.02 -0.29 16 30 H -0.01 -0.53 5.47 -2.39 -0.01 -0.54 16 31 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.04 1.38 6.18 -2.39 -0.01 1.37 16 33 H 0.07 2.42 7.76 -2.39 -0.02 2.40 16 34 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.14 2.98 7.72 -2.91 -0.02 2.96 16 Total: -1.00 -60.22 296.66 3.85 -56.37 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.06 Total: 10.94 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 3.64 Total: -29.93 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -3.65 Total: -80.39 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.78 Total: -2.84 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -60.22 3.85 -56.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.753 kcal (2) G-P(sol) polarization free energy of solvation -60.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds