Wall clock time and date at job start Thu Apr 9 2020 12:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47251 * 2 1 4 4 H 1.09006 * 109.47698 * 179.60849 * 3 2 1 5 5 C 1.50700 * 109.47150 * 59.61089 * 3 2 1 6 6 H 1.08009 * 120.00053 * 240.00540 * 5 3 2 7 7 C 1.37873 * 120.00538 * 60.00023 * 5 3 2 8 8 N 1.31512 * 120.00752 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99527 * 0.02562 * 7 5 3 10 10 H 1.48509 * 109.47236 * 270.00048 * 9 7 5 11 11 H 1.48492 * 109.47380 * 29.99971 * 9 7 5 12 12 H 1.48505 * 109.47213 * 150.00346 * 9 7 5 13 13 N 1.46901 * 109.47438 * 299.60956 * 3 2 1 14 14 C 1.46904 * 111.00024 * 273.28949 * 13 3 2 15 15 H 1.09000 * 109.47006 * 33.22740 * 14 13 3 16 16 C 1.52999 * 109.46700 * 273.22793 * 14 13 3 17 17 C 1.50693 * 109.47371 * 153.22643 * 14 13 3 18 18 C 1.38256 * 119.97402 * 39.72064 * 17 14 13 19 19 C 1.38196 * 120.02464 * 179.76462 * 18 17 14 20 20 C 1.38463 * 119.97290 * 0.51538 * 19 18 17 21 21 F 1.35099 * 120.02117 * 179.76878 * 20 19 18 22 22 C 1.38452 * 119.95214 * 359.73997 * 20 19 18 23 23 C 1.38201 * 119.97050 * 0.02562 * 22 20 19 24 24 H 1.08999 * 109.47029 * 183.12903 * 1 2 3 25 25 H 1.08994 * 109.47027 * 303.12563 * 1 2 3 26 26 H 1.08994 * 109.46712 * 63.12626 * 1 2 3 27 27 H 1.08999 * 109.47616 * 240.00172 * 2 1 3 28 28 H 1.09000 * 109.47464 * 119.99657 * 2 1 3 29 29 H 0.96998 * 120.00730 * 179.97438 * 8 7 5 30 30 H 1.00894 * 111.00401 * 149.32675 * 13 3 2 31 31 H 1.08999 * 109.47153 * 179.97438 * 16 14 13 32 32 H 1.09000 * 109.47347 * 299.99737 * 16 14 13 33 33 H 1.09003 * 109.47304 * 60.00056 * 16 14 13 34 34 H 1.07998 * 119.98083 * 0.02562 * 18 17 14 35 35 H 1.07998 * 120.01077 * 180.25884 * 19 18 17 36 36 H 1.08000 * 120.01587 * 179.97438 * 22 20 19 37 37 H 1.08004 * 119.98341 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1301 1.4426 0.0070 5 6 1.5299 2.1557 1.2256 6 1 0.9095 3.0336 1.1205 7 6 1.8548 1.6876 2.4811 8 7 1.4092 2.3096 3.5506 9 14 2.9282 0.1696 2.6628 10 1 2.0698 -1.0416 2.7052 11 1 3.8562 0.0782 1.5072 12 1 3.7118 0.2651 3.9206 13 7 1.5581 2.1323 -1.2041 14 6 2.4708 1.9171 -2.3349 15 1 2.9131 0.9236 -2.2609 16 6 3.5784 2.9721 -2.3042 17 6 1.7046 2.0306 -3.6276 18 6 0.7298 3.0007 -3.7698 19 6 0.0299 3.1090 -4.9565 20 6 0.2977 2.2385 -5.9994 21 9 -0.3892 2.3404 -7.1583 22 6 1.2704 1.2640 -5.8540 23 6 1.9724 1.1608 -4.6681 24 1 -0.3633 -1.0261 0.0561 25 1 -0.3633 0.5616 0.8606 26 1 -0.3632 0.4645 -0.9167 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6375 1.9801 4.4339 30 1 1.4261 3.1170 -1.0283 31 1 4.2559 2.8122 -3.1430 32 1 3.1361 3.9656 -2.3783 33 1 4.1327 2.8899 -1.3692 34 1 0.5183 3.6769 -2.9546 35 1 -0.7286 3.8695 -5.0688 36 1 1.4799 0.5842 -6.6667 37 1 2.7316 0.4010 -4.5546 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049505863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:59 Heat of formation + Delta-G solvation = -25.409801 kcal Electronic energy + Delta-G solvation = -18463.685168 eV Core-core repulsion = 15541.101523 eV Total energy + Delta-G solvation = -2922.583644 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.81678 -39.28735 -36.81559 -33.78096 -31.72340 -31.05137 -29.83017 -28.21185 -26.26908 -23.41441 -23.22316 -22.72902 -20.60887 -19.19798 -17.63068 -16.76188 -16.19656 -15.59976 -15.50683 -15.19173 -14.22094 -14.01830 -13.72876 -13.46548 -13.35835 -13.10835 -12.81381 -12.65935 -12.43171 -12.18518 -11.93218 -11.31719 -11.17780 -10.95856 -10.73321 -10.60213 -10.43714 -10.20911 -10.01068 -9.34719 -9.00174 -8.99294 -8.61257 -8.39355 -7.53972 -6.13218 -4.12176 1.27762 1.35570 3.24731 3.33390 3.35483 3.71501 4.35219 4.35497 4.72944 4.89934 4.94971 5.12846 5.23601 5.38513 5.46632 5.56283 5.61848 5.88284 5.97833 6.11724 6.13483 6.17677 6.21187 6.22391 6.35764 6.41126 6.48967 6.69995 6.77947 6.90702 7.01032 7.10427 7.21776 7.46632 7.57519 7.87830 8.27655 8.56067 8.91020 9.49285 10.99572 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.036599 B = 0.005235 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.867135 B = 5347.385588 C = 5369.900870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.186 3.814 4 H 0.003 0.997 5 C -0.514 4.514 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.898 5.898 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.269 1.269 12 H -0.298 1.298 13 N -0.668 5.668 14 C 0.116 3.884 15 H 0.080 0.920 16 C -0.174 4.174 17 C -0.061 4.061 18 C -0.067 4.067 19 C -0.155 4.155 20 C 0.081 3.919 21 F -0.148 7.148 22 C -0.156 4.156 23 C -0.093 4.093 24 H 0.019 0.981 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.030 0.970 28 H 0.040 0.960 29 H 0.264 0.736 30 H 0.341 0.659 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.680 -0.966 -15.594 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.078 3.922 4 H 0.020 0.980 5 C -0.552 4.552 6 H 0.096 0.904 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.194 1.194 12 H -0.226 1.226 13 N -0.298 5.298 14 C 0.005 3.995 15 H 0.099 0.901 16 C -0.233 4.233 17 C -0.062 4.062 18 C -0.085 4.085 19 C -0.174 4.174 20 C 0.062 3.938 21 F -0.127 7.127 22 C -0.175 4.175 23 C -0.111 4.111 24 H 0.038 0.962 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.160 0.840 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.221 -1.465 -15.593 15.709 hybrid contribution 1.138 -0.375 0.288 1.232 sum 2.358 -1.840 -15.304 15.594 Atomic orbital electron populations 1.21465 0.95542 0.98238 1.02970 1.21753 0.97444 0.98172 0.97689 1.19579 0.93126 0.91303 0.88239 0.97955 1.21005 1.32474 1.13230 0.88461 0.90371 1.24878 0.95435 0.96668 0.95813 1.69879 1.45266 1.40402 0.97998 0.86881 0.80884 0.83860 0.76746 1.20404 1.19436 1.22600 1.60595 1.46661 1.17115 1.05458 1.20495 0.90765 0.99088 0.89147 0.90141 1.22472 0.99274 0.99483 1.02062 1.20078 0.96310 0.94605 0.95232 1.20874 0.93949 0.97781 0.95914 1.21139 1.02447 1.00438 0.93339 1.17696 0.94768 0.98696 0.82650 1.91461 1.78379 1.95784 1.47037 1.21014 0.97639 0.99371 0.99450 1.20873 0.99301 0.98824 0.92125 0.96209 0.91402 0.92643 0.95129 0.94180 0.92587 0.84036 0.92877 0.92399 0.91767 0.84753 0.85156 0.85312 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.52 37.16 0.35 -2.25 16 2 C -0.11 -2.42 5.28 -26.73 -0.14 -2.56 16 3 C 0.19 4.10 1.69 -68.87 -0.12 3.99 16 4 H 0.00 0.07 6.30 -51.93 -0.33 -0.26 16 5 C -0.51 -13.45 7.84 -34.44 -0.27 -13.72 16 6 H 0.08 2.22 7.84 -52.48 -0.41 1.81 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -26.51 13.96 55.43 0.77 -25.74 16 9 Si 0.89 21.48 24.37 -169.99 -4.14 17.34 16 10 H -0.28 -6.64 6.87 56.52 0.39 -6.26 16 11 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 12 H -0.30 -7.29 7.11 56.52 0.40 -6.88 16 13 N -0.67 -12.26 4.79 -102.17 -0.49 -12.75 16 14 C 0.12 1.77 2.59 -68.87 -0.18 1.59 16 15 H 0.08 1.27 7.10 -51.93 -0.37 0.90 16 16 C -0.17 -2.42 9.13 37.16 0.34 -2.08 16 17 C -0.06 -0.85 4.96 -104.62 -0.52 -1.37 16 18 C -0.07 -0.90 9.32 -39.59 -0.37 -1.27 16 19 C -0.15 -1.97 10.03 -39.51 -0.40 -2.36 16 20 C 0.08 1.06 7.30 -39.42 -0.29 0.77 16 21 F -0.15 -1.97 17.27 2.25 0.04 -1.93 16 22 C -0.16 -1.88 10.03 -39.52 -0.40 -2.28 16 23 C -0.09 -1.16 9.67 -39.59 -0.38 -1.54 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 1.58 7.09 -51.93 -0.37 1.21 16 26 H 0.05 1.11 7.71 -51.93 -0.40 0.71 16 27 H 0.03 0.59 7.58 -51.93 -0.39 0.20 16 28 H 0.04 0.92 3.28 -51.93 -0.17 0.74 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.34 6.25 7.33 -39.29 -0.29 5.96 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 33 H 0.06 0.98 7.58 -51.93 -0.39 0.59 16 34 H 0.13 1.76 7.29 -52.49 -0.38 1.37 16 35 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.13 1.36 8.04 -52.48 -0.42 0.94 16 LS Contribution 299.66 15.07 4.52 4.52 Total: -1.00 -28.16 299.66 -6.98 -35.14 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.22 Total: 4.55 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -2.46 Total: -21.12 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.28 Total: -38.49 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.14 Total: 17.34 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.16 -6.98 -35.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049505863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.732 kcal (2) G-P(sol) polarization free energy of solvation -28.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds