Wall clock time and date at job start Thu Apr 9 2020 12:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47251 * 2 1 4 4 H 1.09006 * 109.47698 * 179.60849 * 3 2 1 5 5 C 1.50700 * 109.47150 * 59.61089 * 3 2 1 6 6 H 1.08009 * 120.00053 * 240.00540 * 5 3 2 7 7 C 1.37873 * 120.00538 * 60.00023 * 5 3 2 8 8 N 1.31512 * 120.00752 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99527 * 0.02562 * 7 5 3 10 10 H 1.48509 * 109.47236 * 270.00048 * 9 7 5 11 11 H 1.48492 * 109.47380 * 29.99971 * 9 7 5 12 12 H 1.48505 * 109.47213 * 150.00346 * 9 7 5 13 13 N 1.46901 * 109.47438 * 299.60956 * 3 2 1 14 14 C 1.46904 * 111.00024 * 273.28949 * 13 3 2 15 15 H 1.09000 * 109.47006 * 33.22740 * 14 13 3 16 16 C 1.52999 * 109.46700 * 273.22793 * 14 13 3 17 17 C 1.50693 * 109.47371 * 153.22643 * 14 13 3 18 18 C 1.38256 * 119.97402 * 39.72064 * 17 14 13 19 19 C 1.38196 * 120.02464 * 179.76462 * 18 17 14 20 20 C 1.38463 * 119.97290 * 0.51538 * 19 18 17 21 21 F 1.35099 * 120.02117 * 179.76878 * 20 19 18 22 22 C 1.38452 * 119.95214 * 359.73997 * 20 19 18 23 23 C 1.38201 * 119.97050 * 0.02562 * 22 20 19 24 24 H 1.08999 * 109.47029 * 183.12903 * 1 2 3 25 25 H 1.08994 * 109.47027 * 303.12563 * 1 2 3 26 26 H 1.08994 * 109.46712 * 63.12626 * 1 2 3 27 27 H 1.08999 * 109.47616 * 240.00172 * 2 1 3 28 28 H 1.09000 * 109.47464 * 119.99657 * 2 1 3 29 29 H 0.96998 * 120.00730 * 179.97438 * 8 7 5 30 30 H 1.00894 * 111.00401 * 149.32675 * 13 3 2 31 31 H 1.08999 * 109.47153 * 179.97438 * 16 14 13 32 32 H 1.09000 * 109.47347 * 299.99737 * 16 14 13 33 33 H 1.09003 * 109.47304 * 60.00056 * 16 14 13 34 34 H 1.07998 * 119.98083 * 0.02562 * 18 17 14 35 35 H 1.07998 * 120.01077 * 180.25884 * 19 18 17 36 36 H 1.08000 * 120.01587 * 179.97438 * 22 20 19 37 37 H 1.08004 * 119.98341 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1301 1.4426 0.0070 5 6 1.5299 2.1557 1.2256 6 1 0.9095 3.0336 1.1205 7 6 1.8548 1.6876 2.4811 8 7 1.4092 2.3096 3.5506 9 14 2.9282 0.1696 2.6628 10 1 2.0698 -1.0416 2.7052 11 1 3.8562 0.0782 1.5072 12 1 3.7118 0.2651 3.9206 13 7 1.5581 2.1323 -1.2041 14 6 2.4708 1.9171 -2.3349 15 1 2.9131 0.9236 -2.2609 16 6 3.5784 2.9721 -2.3042 17 6 1.7046 2.0306 -3.6276 18 6 0.7298 3.0007 -3.7698 19 6 0.0299 3.1090 -4.9565 20 6 0.2977 2.2385 -5.9994 21 9 -0.3892 2.3404 -7.1583 22 6 1.2704 1.2640 -5.8540 23 6 1.9724 1.1608 -4.6681 24 1 -0.3633 -1.0261 0.0561 25 1 -0.3633 0.5616 0.8606 26 1 -0.3632 0.4645 -0.9167 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6375 1.9801 4.4339 30 1 1.4261 3.1170 -1.0283 31 1 4.2559 2.8122 -3.1430 32 1 3.1361 3.9656 -2.3783 33 1 4.1327 2.8899 -1.3692 34 1 0.5183 3.6769 -2.9546 35 1 -0.7286 3.8695 -5.0688 36 1 1.4799 0.5842 -6.6667 37 1 2.7316 0.4010 -4.5546 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049505863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:58 Heat of formation + Delta-G solvation = -41.569343 kcal Electronic energy + Delta-G solvation = -18464.385898 eV Core-core repulsion = 15541.101523 eV Total energy + Delta-G solvation = -2923.284375 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.138 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.82212 -40.36633 -38.29570 -35.33521 -33.66933 -32.02352 -31.14741 -29.46399 -28.05726 -25.01820 -24.50149 -23.80067 -21.92015 -20.75849 -18.79701 -18.43951 -17.49473 -17.04339 -16.56668 -16.50338 -15.58549 -15.32187 -15.29902 -14.85682 -14.64181 -14.46672 -14.33775 -13.87124 -13.71325 -13.59581 -13.24729 -12.86791 -12.51452 -12.46897 -12.36912 -12.06563 -11.92761 -11.74003 -11.65938 -11.20545 -10.89780 -10.67319 -9.95302 -9.44100 -9.03051 -8.26335 -6.27802 0.26503 0.39464 1.32854 1.35851 1.45276 2.33635 2.71021 3.10358 3.37760 3.49385 3.89547 3.93881 4.05631 4.26162 4.37864 4.43085 4.49682 4.52533 4.57693 4.71536 4.84992 4.91073 5.02018 5.10549 5.14000 5.19627 5.24933 5.29171 5.36984 5.38183 5.50000 5.64703 5.72188 5.79076 6.02407 6.08512 6.56149 6.71233 6.89722 7.37684 8.89994 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.036599 B = 0.005235 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.867135 B = 5347.385588 C = 5369.900870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.115 4.115 3 C 0.193 3.807 4 H -0.001 1.001 5 C -0.504 4.504 6 H 0.042 0.958 7 C 0.019 3.981 8 N -0.947 5.947 9 Si 0.940 3.060 10 H -0.270 1.270 11 H -0.249 1.249 12 H -0.303 1.303 13 N -0.668 5.668 14 C 0.118 3.882 15 H 0.082 0.918 16 C -0.169 4.169 17 C -0.072 4.072 18 C -0.077 4.077 19 C -0.158 4.158 20 C 0.070 3.930 21 F -0.151 7.151 22 C -0.152 4.152 23 C -0.091 4.091 24 H 0.041 0.959 25 H 0.033 0.967 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.029 0.971 29 H 0.264 0.736 30 H 0.338 0.662 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.131 0.869 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 -2.585 -17.829 18.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.153 4.153 3 C 0.083 3.917 4 H 0.017 0.983 5 C -0.542 4.542 6 H 0.060 0.940 7 C -0.178 4.178 8 N -0.588 5.588 9 Si 0.769 3.231 10 H -0.197 1.197 11 H -0.173 1.173 12 H -0.231 1.231 13 N -0.298 5.298 14 C 0.008 3.992 15 H 0.100 0.900 16 C -0.228 4.228 17 C -0.073 4.073 18 C -0.096 4.096 19 C -0.177 4.177 20 C 0.051 3.949 21 F -0.130 7.130 22 C -0.170 4.170 23 C -0.109 4.109 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.156 0.844 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.149 0.851 35 H 0.161 0.839 36 H 0.170 0.830 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.173 -3.085 -17.867 18.261 hybrid contribution 0.779 0.213 0.887 1.200 sum 2.952 -2.872 -16.980 17.472 Atomic orbital electron populations 1.21356 0.95290 0.99086 1.01661 1.21744 0.97669 0.97406 0.98439 1.19380 0.92576 0.91831 0.87887 0.98342 1.21260 1.30715 1.11982 0.90290 0.93980 1.25636 0.96989 0.99612 0.95591 1.70024 1.47630 1.42577 0.98567 0.85977 0.79594 0.80523 0.77047 1.19678 1.17285 1.23099 1.60535 1.47664 1.16694 1.04903 1.20515 0.90710 0.99493 0.88464 0.89984 1.22400 0.99078 0.99238 1.02056 1.19985 0.96737 0.95560 0.94992 1.20902 0.94394 0.98039 0.96218 1.21277 1.02588 1.00773 0.93029 1.17908 0.95210 0.99207 0.82604 1.91455 1.78524 1.95841 1.47170 1.21275 0.96706 0.99112 0.99953 1.21085 0.99550 0.98678 0.91591 0.94027 0.94816 0.92020 0.92294 0.95288 0.92734 0.84375 0.90625 0.92193 0.93477 0.85140 0.83910 0.82991 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.67 9.52 71.98 0.69 -3.98 16 2 C -0.11 -4.65 5.28 30.59 0.16 -4.49 16 3 C 0.19 8.29 1.69 44.17 0.07 8.37 16 4 H 0.00 -0.04 6.30 -2.38 -0.02 -0.06 16 5 C -0.50 -26.88 7.84 25.60 0.20 -26.68 16 6 H 0.04 2.49 7.84 -2.91 -0.02 2.47 16 7 C 0.02 1.08 5.45 84.65 0.46 1.54 16 8 N -0.95 -57.70 13.96 21.45 0.30 -57.40 16 9 Si 0.94 43.95 24.37 68.60 1.67 45.62 16 10 H -0.27 -12.26 6.87 99.48 0.68 -11.58 16 11 H -0.25 -10.71 6.53 99.48 0.65 -10.06 16 12 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 13 N -0.67 -23.87 4.79 -477.16 -2.28 -26.16 16 14 C 0.12 3.36 2.59 44.17 0.11 3.47 16 15 H 0.08 2.32 7.10 -2.39 -0.02 2.31 16 16 C -0.17 -4.39 9.13 71.98 0.66 -3.73 16 17 C -0.07 -1.82 4.96 -19.86 -0.10 -1.92 16 18 C -0.08 -1.96 9.32 22.26 0.21 -1.75 16 19 C -0.16 -3.74 10.03 22.31 0.22 -3.52 16 20 C 0.07 1.66 7.30 22.37 0.16 1.82 16 21 F -0.15 -3.71 17.27 44.97 0.78 -2.94 16 22 C -0.15 -3.17 10.03 22.31 0.22 -2.95 16 23 C -0.09 -1.95 9.67 22.26 0.22 -1.73 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.03 1.55 7.09 -2.39 -0.02 1.53 16 26 H 0.06 2.36 7.71 -2.39 -0.02 2.34 16 27 H 0.06 2.07 7.58 -2.39 -0.02 2.05 16 28 H 0.03 1.25 3.28 -2.39 -0.01 1.24 16 29 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 30 H 0.34 12.44 7.33 -89.70 -0.66 11.78 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 33 H 0.05 1.38 7.58 -2.39 -0.02 1.36 16 34 H 0.13 3.34 7.29 -2.91 -0.02 3.32 16 35 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 37 H 0.15 2.53 8.04 -2.91 -0.02 2.50 16 Total: -1.00 -60.62 299.66 4.08 -56.54 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.33 Total: 19.89 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 3.29 Total: -35.56 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -1.98 Total: -83.55 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.78 Total: -2.94 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.67 Total: 45.62 kcal Total: -60.62 4.08 -56.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049505863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.969 kcal (2) G-P(sol) polarization free energy of solvation -60.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds