Wall clock time and date at job start Thu Apr 9 2020 12:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47067 * 2 1 4 4 H 1.09007 * 109.47029 * 305.64326 * 3 2 1 5 5 C 1.50702 * 109.47075 * 185.64659 * 3 2 1 6 6 H 1.07994 * 120.00034 * 239.99627 * 5 3 2 7 7 C 1.37882 * 119.99901 * 59.99915 * 5 3 2 8 8 N 1.31512 * 119.99634 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99827 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47139 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47054 * 120.00107 * 9 7 5 12 12 H 1.48499 * 109.47083 * 240.00172 * 9 7 5 13 13 N 1.46899 * 109.47451 * 65.64616 * 3 2 1 14 14 C 1.46899 * 111.00112 * 204.87306 * 13 3 2 15 15 H 1.08997 * 109.47106 * 326.86190 * 14 13 3 16 16 C 1.53004 * 109.47328 * 86.86580 * 14 13 3 17 17 C 1.50700 * 109.46910 * 206.86660 * 14 13 3 18 18 C 1.38265 * 119.98930 * 140.00271 * 17 14 13 19 19 C 1.38220 * 120.05318 * 179.97438 * 18 17 14 20 20 C 1.38222 * 120.02663 * 359.97438 * 19 18 17 21 21 C 1.38439 * 119.97365 * 0.02562 * 20 19 18 22 22 F 1.35099 * 120.02544 * 180.02562 * 21 20 19 23 23 C 1.38179 * 119.98453 * 319.72156 * 17 14 13 24 24 H 1.09000 * 109.47336 * 294.21707 * 1 2 3 25 25 H 1.09004 * 109.47466 * 54.21823 * 1 2 3 26 26 H 1.09001 * 109.47443 * 174.21551 * 1 2 3 27 27 H 1.08996 * 109.47067 * 119.99643 * 2 1 3 28 28 H 1.08996 * 109.47145 * 239.99978 * 2 1 3 29 29 H 0.97003 * 119.99417 * 180.02562 * 8 7 5 30 30 H 1.00902 * 110.99686 * 328.82716 * 13 3 2 31 31 H 1.09001 * 109.47081 * 64.36595 * 16 14 13 32 32 H 1.09001 * 109.46875 * 184.36612 * 16 14 13 33 33 H 1.08996 * 109.46868 * 304.36427 * 16 14 13 34 34 H 1.07996 * 119.97145 * 359.96853 * 18 17 14 35 35 H 1.07994 * 119.98945 * 180.02562 * 19 18 17 36 36 H 1.07997 * 120.01460 * 180.02562 * 20 19 18 37 37 H 1.07996 * 120.01766 * 0.02562 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5964 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8865 0.6314 7 6 4.1300 0.8830 -1.2524 8 7 3.3828 0.3456 -2.1918 9 14 5.9900 0.8852 -1.4254 10 1 6.5964 1.5460 -0.2417 11 1 6.4803 -0.5135 -1.5174 12 1 6.3720 1.6255 -2.6547 13 7 1.6647 2.0946 1.2617 14 6 1.5871 3.5524 1.0981 15 1 2.3285 3.8760 0.3676 16 6 0.1888 3.9372 0.6105 17 6 1.8597 4.2214 2.4207 18 6 2.6260 5.3713 2.4685 19 6 2.8764 5.9864 3.6807 20 6 2.3605 5.4527 4.8467 21 6 1.5931 4.3014 4.8001 22 9 1.0879 3.7792 5.9391 23 6 1.3389 3.6887 3.5844 24 1 -0.3634 0.4215 0.9372 25 1 -0.3634 0.6009 -0.8337 26 1 -0.3634 -1.0224 -0.1036 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.7977 -0.0499 -2.9744 30 1 0.7958 1.7236 1.6160 31 1 -0.5453 3.6835 1.3754 32 1 0.1544 5.0089 0.4150 33 1 -0.0388 3.3931 -0.3061 34 1 3.0292 5.7892 1.5579 35 1 3.4747 6.8847 3.7168 36 1 2.5560 5.9336 5.7937 37 1 0.7370 2.7929 3.5464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049529913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:11 Heat of formation + Delta-G solvation = -33.285124 kcal Electronic energy + Delta-G solvation = -18473.531877 eV Core-core repulsion = 15550.606733 eV Total energy + Delta-G solvation = -2922.925144 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.67382 -39.11497 -36.63478 -33.65780 -31.68913 -30.33287 -29.88340 -28.28887 -26.12489 -23.67578 -22.81764 -22.20811 -20.23120 -19.59310 -17.09487 -16.23510 -16.05043 -15.88284 -15.37590 -14.82779 -14.56935 -14.04692 -13.67494 -13.39074 -13.11208 -12.70685 -12.67507 -12.53022 -11.86765 -11.76880 -11.65170 -11.47911 -11.18905 -10.90293 -10.69979 -10.62245 -10.51849 -9.96927 -9.73175 -9.63650 -9.10977 -8.65100 -8.40006 -8.36748 -7.27941 -5.98262 -4.02156 1.41754 1.49164 3.30440 3.38862 3.44441 3.84795 4.44071 4.46895 4.90645 4.98033 5.18419 5.30357 5.37759 5.48350 5.63633 5.69866 5.74967 5.97437 6.13678 6.14967 6.20518 6.24883 6.30422 6.37162 6.44548 6.45948 6.56093 6.82103 6.90642 7.06703 7.14930 7.16484 7.47849 7.76061 7.91194 8.25969 8.37272 8.71935 9.06806 9.63187 11.07062 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.006424 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.516334 B = 4357.860733 C = 5003.365468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.005 0.995 5 C -0.492 4.492 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.121 3.879 15 H 0.096 0.904 16 C -0.174 4.174 17 C -0.019 4.019 18 C -0.128 4.128 19 C -0.094 4.094 20 C -0.170 4.170 21 C 0.090 3.910 22 F -0.147 7.147 23 C -0.132 4.132 24 H 0.034 0.966 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.100 0.900 29 H 0.259 0.741 30 H 0.318 0.682 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.887 8.585 8.241 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.113 3.887 4 H 0.022 0.978 5 C -0.531 4.531 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.309 5.309 14 C 0.010 3.990 15 H 0.114 0.886 16 C -0.233 4.233 17 C -0.020 4.020 18 C -0.147 4.147 19 C -0.113 4.113 20 C -0.189 4.189 21 C 0.071 3.929 22 F -0.126 7.126 23 C -0.151 4.151 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.136 0.864 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.234 8.462 8.338 12.611 hybrid contribution 0.127 -0.130 -0.432 0.469 sum -4.107 8.332 7.906 12.198 Atomic orbital electron populations 1.21884 0.99600 0.99751 0.99481 1.21769 0.91219 1.00362 1.03132 1.19188 0.95455 0.89942 0.84150 0.97763 1.21265 0.91287 1.36427 1.04156 0.91984 1.24950 0.98038 0.95647 0.95873 1.69880 1.34569 1.39594 1.09583 0.86520 0.85902 0.77638 0.77839 1.19766 1.21144 1.21251 1.60789 1.35913 1.00958 1.33224 1.20456 0.96191 0.90251 0.92053 0.88601 1.22484 0.97710 1.01535 1.01522 1.19956 0.93592 0.93205 0.95266 1.21132 0.99310 0.96103 0.98141 1.20893 0.98971 0.99668 0.91723 1.20991 1.01375 0.96743 0.99743 1.17738 0.98394 0.94753 0.81989 1.91461 1.85698 1.86363 1.49039 1.20927 1.02740 1.00853 0.90579 0.94666 0.93875 0.94394 0.94038 0.88204 0.93149 0.86390 0.93034 0.92726 0.91911 0.85523 0.85542 0.85531 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.64 37.16 0.36 -2.45 16 2 C -0.13 -2.90 5.36 -26.73 -0.14 -3.04 16 3 C 0.22 5.23 1.83 -68.87 -0.13 5.10 16 4 H 0.00 0.12 7.24 -51.93 -0.38 -0.25 16 5 C -0.49 -13.25 8.50 -34.44 -0.29 -13.55 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.02 11.29 55.43 0.63 -24.40 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 13 N -0.68 -13.66 5.48 -102.17 -0.56 -14.22 16 14 C 0.12 2.14 2.59 -68.86 -0.18 1.97 16 15 H 0.10 1.89 7.47 -51.93 -0.39 1.50 16 16 C -0.17 -2.63 9.13 37.16 0.34 -2.30 16 17 C -0.02 -0.31 4.95 -104.63 -0.52 -0.83 16 18 C -0.13 -1.83 9.67 -39.58 -0.38 -2.22 16 19 C -0.09 -1.18 10.04 -39.59 -0.40 -1.58 16 20 C -0.17 -2.22 10.03 -39.51 -0.40 -2.62 16 21 C 0.09 1.36 7.30 -39.41 -0.29 1.07 16 22 F -0.15 -2.23 17.27 2.25 0.04 -2.19 16 23 C -0.13 -2.09 9.30 -39.51 -0.37 -2.45 16 24 H 0.03 0.59 6.66 -51.93 -0.35 0.24 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.10 2.59 5.94 -51.93 -0.31 2.29 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.32 5.88 5.76 -39.29 -0.23 5.65 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.02 7.53 -51.93 -0.39 0.63 16 34 H 0.13 1.64 8.04 -52.49 -0.42 1.22 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.13 2.05 7.32 -52.49 -0.38 1.67 16 LS Contribution 307.42 15.07 4.63 4.63 Total: -1.00 -27.83 307.42 -8.12 -35.94 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.35 Total: 5.47 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -2.49 Total: -21.49 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.07 Total: -38.62 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.83 -8.12 -35.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049529913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.656 kcal (2) G-P(sol) polarization free energy of solvation -27.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds