Wall clock time and date at job start Thu Apr 9 2020 12:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47206 * 2 1 4 4 H 1.08997 * 109.47434 * 54.37237 * 3 2 1 5 5 C 1.50706 * 109.46987 * 174.37907 * 3 2 1 6 6 H 1.07991 * 120.00314 * 120.00041 * 5 3 2 7 7 C 1.37879 * 119.99624 * 299.99478 * 5 3 2 8 8 N 1.31515 * 119.99785 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99896 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47174 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46825 * 120.00473 * 9 7 5 12 12 H 1.48500 * 109.46999 * 240.00341 * 9 7 5 13 13 N 1.46903 * 109.47291 * 294.37347 * 3 2 1 14 14 C 1.46895 * 111.00002 * 155.62156 * 13 3 2 15 15 H 1.08991 * 109.47482 * 33.35345 * 14 13 3 16 16 C 1.53002 * 109.47185 * 273.35129 * 14 13 3 17 17 C 1.50702 * 109.47346 * 153.35621 * 14 13 3 18 18 C 1.38269 * 119.98683 * 39.72366 * 17 14 13 19 19 C 1.38225 * 120.05212 * 179.73165 * 18 17 14 20 20 C 1.38218 * 120.02327 * 0.54361 * 19 18 17 21 21 C 1.38445 * 119.97558 * 359.72848 * 20 19 18 22 22 F 1.35097 * 120.02581 * 180.02562 * 21 20 19 23 23 C 1.38173 * 119.98932 * 220.00036 * 17 14 13 24 24 H 1.08999 * 109.47220 * 185.64997 * 1 2 3 25 25 H 1.09005 * 109.47066 * 305.64535 * 1 2 3 26 26 H 1.09004 * 109.47547 * 65.64015 * 1 2 3 27 27 H 1.09008 * 109.46324 * 240.00149 * 2 1 3 28 28 H 1.08996 * 109.47283 * 120.00592 * 2 1 3 29 29 H 0.97007 * 119.99601 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99995 * 31.66391 * 13 3 2 31 31 H 1.09007 * 109.47111 * 64.92215 * 16 14 13 32 32 H 1.09002 * 109.47470 * 184.92009 * 16 14 13 33 33 H 1.09007 * 109.47240 * 304.92270 * 16 14 13 34 34 H 1.07999 * 119.97470 * 359.97438 * 18 17 14 35 35 H 1.07994 * 119.98841 * 180.27437 * 19 18 17 36 36 H 1.07998 * 120.01786 * 179.70393 * 20 19 18 37 37 H 1.08005 * 120.01266 * 0.02562 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5968 1.9846 0.8353 5 6 3.5406 1.4446 0.1392 6 1 4.1538 1.8864 -0.6322 7 6 4.1306 0.8828 1.2515 8 7 3.3837 0.3445 2.1908 9 14 5.9905 0.8861 1.4244 10 1 6.5965 1.5478 0.2412 11 1 6.3719 1.6260 2.6542 12 1 6.4817 -0.5123 1.5157 13 7 1.6644 2.0947 -1.2616 14 6 1.5982 3.5533 -1.1008 15 1 2.3476 3.8734 -0.3769 16 6 0.2066 3.9489 -0.6030 17 6 1.8649 4.2175 -2.4269 18 6 1.3402 3.6791 -3.5874 19 6 1.5794 4.2904 -4.8039 20 6 2.3527 5.4345 -4.8628 21 6 2.8832 5.9713 -3.7022 22 9 3.6388 7.0898 -3.7586 23 6 2.6383 5.3611 -2.4834 24 1 -0.3633 -1.0227 0.1012 25 1 -0.3633 0.5989 0.8352 26 1 -0.3634 0.4239 -0.9362 27 1 1.8932 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.7989 -0.0511 2.9732 30 1 0.7913 1.7294 -1.6115 31 1 0.0478 3.5401 0.3949 32 1 0.1289 5.0356 -0.5670 33 1 -0.5484 3.5530 -1.2822 34 1 0.7399 2.7825 -3.5429 35 1 1.1654 3.8715 -5.7091 36 1 2.5434 5.9093 -5.8139 37 1 3.0521 5.7788 -1.5774 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049529914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:13 Heat of formation + Delta-G solvation = -33.194884 kcal Electronic energy + Delta-G solvation = -18434.776114 eV Core-core repulsion = 15511.854884 eV Total energy + Delta-G solvation = -2922.921231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.138 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.69360 -39.11949 -36.62272 -33.65194 -31.70897 -30.52354 -29.68296 -28.29970 -26.12796 -23.62943 -22.70953 -22.43399 -20.19367 -19.59772 -17.03531 -16.26625 -16.04244 -15.89357 -15.39688 -14.86561 -14.57805 -14.05729 -13.72533 -13.35396 -13.03975 -12.74554 -12.67786 -12.53044 -11.92306 -11.75832 -11.67146 -11.39872 -11.15625 -10.91814 -10.81474 -10.62709 -10.44703 -9.97214 -9.74029 -9.64062 -9.11378 -8.68951 -8.36903 -8.36684 -7.28582 -5.98373 -4.02277 1.43594 1.46884 3.30870 3.39256 3.45205 3.85199 4.41354 4.45700 4.87325 5.05441 5.21961 5.30107 5.36968 5.49218 5.59248 5.69346 5.75718 5.96286 6.12193 6.12772 6.14302 6.27302 6.33756 6.34398 6.43030 6.47142 6.61409 6.81080 6.90606 7.06284 7.14442 7.15963 7.47661 7.75689 7.91042 8.25027 8.36875 8.71744 9.06715 9.63184 11.06905 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.019459 B = 0.006651 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.556434 B = 4208.941858 C = 5143.019303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.004 0.996 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.677 5.677 14 C 0.121 3.879 15 H 0.094 0.906 16 C -0.172 4.172 17 C -0.020 4.020 18 C -0.108 4.108 19 C -0.096 4.096 20 C -0.169 4.169 21 C 0.091 3.909 22 F -0.147 7.147 23 C -0.152 4.152 24 H 0.037 0.963 25 H 0.042 0.958 26 H 0.034 0.966 27 H 0.041 0.959 28 H 0.100 0.900 29 H 0.259 0.741 30 H 0.318 0.682 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.134 6.940 -9.334 13.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.022 0.978 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.308 5.308 14 C 0.010 3.990 15 H 0.113 0.887 16 C -0.231 4.231 17 C -0.021 4.021 18 C -0.126 4.126 19 C -0.115 4.115 20 C -0.188 4.188 21 C 0.072 3.928 22 F -0.126 7.126 23 C -0.171 4.171 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.429 6.878 -9.389 12.843 hybrid contribution 0.391 0.217 0.662 0.799 sum -5.038 7.095 -8.727 12.324 Atomic orbital electron populations 1.21883 0.99599 0.99729 0.99486 1.21766 0.91208 1.00328 1.03133 1.19185 0.95442 0.89955 0.84154 0.97799 1.21265 0.91296 1.36427 1.04189 0.91994 1.24946 0.98038 0.95636 0.95867 1.69880 1.34571 1.39570 1.09601 0.86525 0.85909 0.77627 0.77885 1.19759 1.21243 1.21127 1.60777 1.35547 1.00991 1.33449 1.20436 0.96317 0.90216 0.91999 0.88745 1.22475 0.97625 1.01327 1.01713 1.19944 0.93365 0.92383 0.96358 1.21016 1.00448 0.99618 0.91567 1.20952 0.97693 0.94666 0.98146 1.20994 1.01800 0.98894 0.97086 1.17661 0.95104 0.85160 0.94839 1.91461 1.74023 1.49774 1.97313 1.21040 1.01685 0.97638 0.96732 0.94410 0.93880 0.94659 0.94031 0.88215 0.93147 0.86384 0.91958 0.92803 0.92936 0.85473 0.85565 0.85530 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.64 37.16 0.36 -2.40 16 2 C -0.13 -2.85 5.37 -26.73 -0.14 -3.00 16 3 C 0.22 5.20 1.84 -68.86 -0.13 5.07 16 4 H 0.00 0.11 7.28 -51.93 -0.38 -0.26 16 5 C -0.49 -13.28 8.47 -34.44 -0.29 -13.57 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.04 11.29 55.43 0.63 -24.42 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 13 N -0.68 -13.39 5.46 -102.17 -0.56 -13.95 16 14 C 0.12 2.14 2.59 -68.87 -0.18 1.97 16 15 H 0.09 1.90 7.46 -51.93 -0.39 1.51 16 16 C -0.17 -2.61 9.15 37.16 0.34 -2.27 16 17 C -0.02 -0.32 4.96 -104.63 -0.52 -0.83 16 18 C -0.11 -1.56 9.32 -39.57 -0.37 -1.93 16 19 C -0.10 -1.22 10.04 -39.59 -0.40 -1.61 16 20 C -0.17 -2.21 10.03 -39.51 -0.40 -2.61 16 21 C 0.09 1.37 7.30 -39.42 -0.29 1.08 16 22 F -0.15 -2.23 17.27 2.25 0.04 -2.19 16 23 C -0.15 -2.39 9.65 -39.52 -0.38 -2.77 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.57 6.65 -51.93 -0.35 0.23 16 27 H 0.04 0.95 8.14 -51.92 -0.42 0.52 16 28 H 0.10 2.57 5.94 -51.93 -0.31 2.27 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.32 5.66 5.68 -39.29 -0.22 5.44 16 31 H 0.06 1.01 7.60 -51.93 -0.39 0.61 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.72 8.04 -51.92 -0.42 0.30 16 34 H 0.13 1.72 7.29 -52.49 -0.38 1.34 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.13 1.98 8.04 -52.48 -0.42 1.56 16 LS Contribution 307.31 15.07 4.63 4.63 Total: -1.00 -27.81 307.31 -8.11 -35.92 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.34 Total: 5.05 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -2.49 Total: -21.45 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.07 Total: -38.37 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.81 -8.11 -35.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049529914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.729 kcal (2) G-P(sol) polarization free energy of solvation -27.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds