Wall clock time and date at job start Thu Apr 9 2020 12:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47206 * 2 1 4 4 H 1.08997 * 109.47434 * 54.37237 * 3 2 1 5 5 C 1.50706 * 109.46987 * 174.37907 * 3 2 1 6 6 H 1.07991 * 120.00314 * 120.00041 * 5 3 2 7 7 C 1.37879 * 119.99624 * 299.99478 * 5 3 2 8 8 N 1.31515 * 119.99785 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99896 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47174 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46825 * 120.00473 * 9 7 5 12 12 H 1.48500 * 109.46999 * 240.00341 * 9 7 5 13 13 N 1.46903 * 109.47291 * 294.37347 * 3 2 1 14 14 C 1.46895 * 111.00002 * 155.62156 * 13 3 2 15 15 H 1.08991 * 109.47482 * 33.35345 * 14 13 3 16 16 C 1.53002 * 109.47185 * 273.35129 * 14 13 3 17 17 C 1.50702 * 109.47346 * 153.35621 * 14 13 3 18 18 C 1.38269 * 119.98683 * 39.72366 * 17 14 13 19 19 C 1.38225 * 120.05212 * 179.73165 * 18 17 14 20 20 C 1.38218 * 120.02327 * 0.54361 * 19 18 17 21 21 C 1.38445 * 119.97558 * 359.72848 * 20 19 18 22 22 F 1.35097 * 120.02581 * 180.02562 * 21 20 19 23 23 C 1.38173 * 119.98932 * 220.00036 * 17 14 13 24 24 H 1.08999 * 109.47220 * 185.64997 * 1 2 3 25 25 H 1.09005 * 109.47066 * 305.64535 * 1 2 3 26 26 H 1.09004 * 109.47547 * 65.64015 * 1 2 3 27 27 H 1.09008 * 109.46324 * 240.00149 * 2 1 3 28 28 H 1.08996 * 109.47283 * 120.00592 * 2 1 3 29 29 H 0.97007 * 119.99601 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99995 * 31.66391 * 13 3 2 31 31 H 1.09007 * 109.47111 * 64.92215 * 16 14 13 32 32 H 1.09002 * 109.47470 * 184.92009 * 16 14 13 33 33 H 1.09007 * 109.47240 * 304.92270 * 16 14 13 34 34 H 1.07999 * 119.97470 * 359.97438 * 18 17 14 35 35 H 1.07994 * 119.98841 * 180.27437 * 19 18 17 36 36 H 1.07998 * 120.01786 * 179.70393 * 20 19 18 37 37 H 1.08005 * 120.01266 * 0.02562 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5968 1.9846 0.8353 5 6 3.5406 1.4446 0.1392 6 1 4.1538 1.8864 -0.6322 7 6 4.1306 0.8828 1.2515 8 7 3.3837 0.3445 2.1908 9 14 5.9905 0.8861 1.4244 10 1 6.5965 1.5478 0.2412 11 1 6.3719 1.6260 2.6542 12 1 6.4817 -0.5123 1.5157 13 7 1.6644 2.0947 -1.2616 14 6 1.5982 3.5533 -1.1008 15 1 2.3476 3.8734 -0.3769 16 6 0.2066 3.9489 -0.6030 17 6 1.8649 4.2175 -2.4269 18 6 1.3402 3.6791 -3.5874 19 6 1.5794 4.2904 -4.8039 20 6 2.3527 5.4345 -4.8628 21 6 2.8832 5.9713 -3.7022 22 9 3.6388 7.0898 -3.7586 23 6 2.6383 5.3611 -2.4834 24 1 -0.3633 -1.0227 0.1012 25 1 -0.3633 0.5989 0.8352 26 1 -0.3634 0.4239 -0.9362 27 1 1.8932 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.7989 -0.0511 2.9732 30 1 0.7913 1.7294 -1.6115 31 1 0.0478 3.5401 0.3949 32 1 0.1289 5.0356 -0.5670 33 1 -0.5484 3.5530 -1.2822 34 1 0.7399 2.7825 -3.5429 35 1 1.1654 3.8715 -5.7091 36 1 2.5434 5.9093 -5.8139 37 1 3.0521 5.7788 -1.5774 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049529914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:12 Heat of formation + Delta-G solvation = -47.956271 kcal Electronic energy + Delta-G solvation = -18435.416216 eV Core-core repulsion = 15511.854884 eV Total energy + Delta-G solvation = -2923.561333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.85421 -40.33108 -38.19505 -35.29417 -33.58206 -31.72129 -30.96517 -29.71240 -27.99719 -25.07725 -24.27324 -23.59714 -21.51341 -21.39604 -18.30380 -18.21016 -17.34965 -17.01096 -16.64314 -16.56472 -16.04126 -15.73552 -15.13277 -14.62287 -14.43034 -14.29826 -14.04905 -13.86611 -13.47559 -13.17331 -12.98872 -12.87195 -12.78268 -12.52698 -12.51963 -12.12642 -11.98408 -11.84404 -11.50982 -11.31020 -11.00970 -10.42639 -9.83268 -9.51120 -8.96320 -8.06669 -6.17598 0.30730 0.35892 1.37483 1.40622 1.51706 2.43125 2.72824 3.18264 3.26036 3.66265 3.91084 3.98721 4.20831 4.27350 4.40143 4.44546 4.54837 4.57074 4.61817 4.73880 4.76090 4.98614 5.03375 5.11403 5.18380 5.22709 5.27592 5.31511 5.41100 5.49895 5.61077 5.70565 5.80096 5.93888 6.05122 6.38899 6.53063 6.97036 7.04874 7.51547 8.96104 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.019459 B = 0.006651 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.556434 B = 4208.941858 C = 5143.019303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.228 3.772 4 H -0.025 1.025 5 C -0.508 4.508 6 H 0.044 0.956 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.676 5.676 14 C 0.124 3.876 15 H 0.057 0.943 16 C -0.163 4.163 17 C -0.037 4.037 18 C -0.113 4.113 19 C -0.086 4.086 20 C -0.161 4.161 21 C 0.077 3.923 22 F -0.152 7.152 23 C -0.169 4.169 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.260 0.740 30 H 0.332 0.668 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.138 0.862 35 H 0.165 0.835 36 H 0.155 0.845 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.046 7.010 -11.522 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.120 3.880 4 H -0.008 1.008 5 C -0.547 4.547 6 H 0.063 0.937 7 C -0.186 4.186 8 N -0.558 5.558 9 Si 0.774 3.226 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.205 1.205 13 N -0.307 5.307 14 C 0.013 3.987 15 H 0.075 0.925 16 C -0.222 4.222 17 C -0.038 4.038 18 C -0.131 4.131 19 C -0.103 4.103 20 C -0.180 4.180 21 C 0.058 3.942 22 F -0.131 7.131 23 C -0.189 4.189 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.152 0.848 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.156 0.844 35 H 0.182 0.818 36 H 0.173 0.827 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.352 6.957 -11.586 14.932 hybrid contribution 0.679 0.242 1.290 1.478 sum -5.672 7.199 -10.296 13.784 Atomic orbital electron populations 1.21747 0.96068 1.01074 1.00673 1.21587 0.94376 0.98904 1.01155 1.18898 0.93552 0.90658 0.84850 1.00762 1.21511 0.93180 1.36197 1.03850 0.93724 1.25592 1.01732 0.95531 0.95745 1.69995 1.35886 1.40053 1.09883 0.85662 0.81547 0.77714 0.77638 1.19969 1.20818 1.20486 1.60623 1.36579 1.02222 1.31316 1.20315 0.96823 0.88934 0.92612 0.92455 1.22359 0.96424 1.02284 1.01089 1.19783 0.94962 0.92953 0.96074 1.21213 1.00346 0.99962 0.91596 1.21348 0.96445 0.93824 0.98726 1.21371 1.00484 0.98686 0.97414 1.17849 0.95733 0.85351 0.95292 1.91446 1.74242 1.50028 1.97336 1.21068 1.02367 0.98209 0.97221 0.92640 0.94442 0.92013 0.94498 0.91597 0.93119 0.84849 0.93567 0.91396 0.90784 0.84422 0.81776 0.82696 0.85822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 9.64 71.98 0.69 -4.19 16 2 C -0.12 -5.55 5.37 30.59 0.16 -5.38 16 3 C 0.23 11.07 1.84 44.17 0.08 11.15 16 4 H -0.03 -1.35 7.28 -2.39 -0.02 -1.37 16 5 C -0.51 -28.23 8.47 25.60 0.22 -28.01 16 6 H 0.04 2.57 7.81 -2.92 -0.02 2.55 16 7 C 0.01 0.68 5.29 84.66 0.45 1.12 16 8 N -0.92 -52.51 11.29 21.45 0.24 -52.27 16 9 Si 0.95 44.74 29.54 68.60 2.03 46.76 16 10 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 N -0.68 -26.68 5.46 -477.17 -2.61 -29.28 16 14 C 0.12 4.44 2.59 44.17 0.11 4.55 16 15 H 0.06 2.45 7.46 -2.39 -0.02 2.43 16 16 C -0.16 -4.83 9.15 71.98 0.66 -4.17 16 17 C -0.04 -1.17 4.96 -19.87 -0.10 -1.26 16 18 C -0.11 -2.97 9.32 22.27 0.21 -2.76 16 19 C -0.09 -1.83 10.04 22.26 0.22 -1.61 16 20 C -0.16 -3.70 10.03 22.31 0.22 -3.48 16 21 C 0.08 2.20 7.30 22.38 0.16 2.37 16 22 F -0.15 -4.48 17.27 44.97 0.78 -3.70 16 23 C -0.17 -5.35 9.65 22.31 0.22 -5.14 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.06 1.84 6.65 -2.38 -0.02 1.82 16 27 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.07 3.47 5.94 -2.39 -0.01 3.46 16 29 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 30 H 0.33 11.30 5.68 -89.69 -0.51 10.79 16 31 H 0.05 1.50 7.60 -2.38 -0.02 1.48 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 1.86 8.04 -2.38 -0.02 1.84 16 34 H 0.14 3.28 7.29 -2.91 -0.02 3.26 16 35 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 36 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.12 3.93 8.04 -2.91 -0.02 3.91 16 Total: -1.00 -61.30 307.31 4.30 -57.01 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.55 Total: 18.28 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 3.31 Total: -36.80 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -2.36 Total: -81.55 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.78 Total: -3.70 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -61.30 4.30 -57.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049529914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.051 kcal (2) G-P(sol) polarization free energy of solvation -61.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds